data_3K0Y # _entry.id 3K0Y # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3K0Y pdb_00003k0y 10.2210/pdb3k0y/pdb RCSB RCSB055407 ? ? WWPDB D_1000055407 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 394722 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3K0Y _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-09-25 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of Putative TOXIN related protein (YP_001303978.1) from Parabacteroides distasonis ATCC 8503 at 2.16 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3K0Y _cell.length_a 71.722 _cell.length_b 71.722 _cell.length_c 102.566 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3K0Y _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative TOXIN related protein' 25785.793 1 ? ? ? ? 2 non-polymer syn 'NONAETHYLENE GLYCOL' 414.488 2 ? ? ? ? 3 water nat water 18.015 56 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GDDNSYSLGDIWIAVATVVPEGNNVYYLRLDDGDKLWPAATNYPNYQPKPNQRALVNFTILADSTQSNLGGFSHYIKVNA IHNILTKSIAKNEGAANDSIYGTDPVSIYNNN(MSE)WIGDGYLNIYFETLWGGKTAHFINLIQPDAENDPYTLEFRHNA YDDPQYTIGAGRVAFNLSSLPDTKGETVDLVVNYWTSEGKQAYKLKYNSDKTK(MSE)EDTSQGYTNDSISNITD(MSE) K ; _entity_poly.pdbx_seq_one_letter_code_can ;GDDNSYSLGDIWIAVATVVPEGNNVYYLRLDDGDKLWPAATNYPNYQPKPNQRALVNFTILADSTQSNLGGFSHYIKVNA IHNILTKSIAKNEGAANDSIYGTDPVSIYNNNMWIGDGYLNIYFETLWGGKTAHFINLIQPDAENDPYTLEFRHNAYDDP QYTIGAGRVAFNLSSLPDTKGETVDLVVNYWTSEGKQAYKLKYNSDKTKMEDTSQGYTNDSISNITDMK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 394722 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ASP n 1 3 ASP n 1 4 ASN n 1 5 SER n 1 6 TYR n 1 7 SER n 1 8 LEU n 1 9 GLY n 1 10 ASP n 1 11 ILE n 1 12 TRP n 1 13 ILE n 1 14 ALA n 1 15 VAL n 1 16 ALA n 1 17 THR n 1 18 VAL n 1 19 VAL n 1 20 PRO n 1 21 GLU n 1 22 GLY n 1 23 ASN n 1 24 ASN n 1 25 VAL n 1 26 TYR n 1 27 TYR n 1 28 LEU n 1 29 ARG n 1 30 LEU n 1 31 ASP n 1 32 ASP n 1 33 GLY n 1 34 ASP n 1 35 LYS n 1 36 LEU n 1 37 TRP n 1 38 PRO n 1 39 ALA n 1 40 ALA n 1 41 THR n 1 42 ASN n 1 43 TYR n 1 44 PRO n 1 45 ASN n 1 46 TYR n 1 47 GLN n 1 48 PRO n 1 49 LYS n 1 50 PRO n 1 51 ASN n 1 52 GLN n 1 53 ARG n 1 54 ALA n 1 55 LEU n 1 56 VAL n 1 57 ASN n 1 58 PHE n 1 59 THR n 1 60 ILE n 1 61 LEU n 1 62 ALA n 1 63 ASP n 1 64 SER n 1 65 THR n 1 66 GLN n 1 67 SER n 1 68 ASN n 1 69 LEU n 1 70 GLY n 1 71 GLY n 1 72 PHE n 1 73 SER n 1 74 HIS n 1 75 TYR n 1 76 ILE n 1 77 LYS n 1 78 VAL n 1 79 ASN n 1 80 ALA n 1 81 ILE n 1 82 HIS n 1 83 ASN n 1 84 ILE n 1 85 LEU n 1 86 THR n 1 87 LYS n 1 88 SER n 1 89 ILE n 1 90 ALA n 1 91 LYS n 1 92 ASN n 1 93 GLU n 1 94 GLY n 1 95 ALA n 1 96 ALA n 1 97 ASN n 1 98 ASP n 1 99 SER n 1 100 ILE n 1 101 TYR n 1 102 GLY n 1 103 THR n 1 104 ASP n 1 105 PRO n 1 106 VAL n 1 107 SER n 1 108 ILE n 1 109 TYR n 1 110 ASN n 1 111 ASN n 1 112 ASN n 1 113 MSE n 1 114 TRP n 1 115 ILE n 1 116 GLY n 1 117 ASP n 1 118 GLY n 1 119 TYR n 1 120 LEU n 1 121 ASN n 1 122 ILE n 1 123 TYR n 1 124 PHE n 1 125 GLU n 1 126 THR n 1 127 LEU n 1 128 TRP n 1 129 GLY n 1 130 GLY n 1 131 LYS n 1 132 THR n 1 133 ALA n 1 134 HIS n 1 135 PHE n 1 136 ILE n 1 137 ASN n 1 138 LEU n 1 139 ILE n 1 140 GLN n 1 141 PRO n 1 142 ASP n 1 143 ALA n 1 144 GLU n 1 145 ASN n 1 146 ASP n 1 147 PRO n 1 148 TYR n 1 149 THR n 1 150 LEU n 1 151 GLU n 1 152 PHE n 1 153 ARG n 1 154 HIS n 1 155 ASN n 1 156 ALA n 1 157 TYR n 1 158 ASP n 1 159 ASP n 1 160 PRO n 1 161 GLN n 1 162 TYR n 1 163 THR n 1 164 ILE n 1 165 GLY n 1 166 ALA n 1 167 GLY n 1 168 ARG n 1 169 VAL n 1 170 ALA n 1 171 PHE n 1 172 ASN n 1 173 LEU n 1 174 SER n 1 175 SER n 1 176 LEU n 1 177 PRO n 1 178 ASP n 1 179 THR n 1 180 LYS n 1 181 GLY n 1 182 GLU n 1 183 THR n 1 184 VAL n 1 185 ASP n 1 186 LEU n 1 187 VAL n 1 188 VAL n 1 189 ASN n 1 190 TYR n 1 191 TRP n 1 192 THR n 1 193 SER n 1 194 GLU n 1 195 GLY n 1 196 LYS n 1 197 GLN n 1 198 ALA n 1 199 TYR n 1 200 LYS n 1 201 LEU n 1 202 LYS n 1 203 TYR n 1 204 ASN n 1 205 SER n 1 206 ASP n 1 207 LYS n 1 208 THR n 1 209 LYS n 1 210 MSE n 1 211 GLU n 1 212 ASP n 1 213 THR n 1 214 SER n 1 215 GLN n 1 216 GLY n 1 217 TYR n 1 218 THR n 1 219 ASN n 1 220 ASP n 1 221 SER n 1 222 ILE n 1 223 SER n 1 224 ASN n 1 225 ILE n 1 226 THR n 1 227 ASP n 1 228 MSE n 1 229 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene BDI_2637 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 8503 / DSM 20701 / NCTC 11152' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Parabacteroides distasonis ATCC 8503' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 435591 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A6LF92_PARD8 _struct_ref.pdbx_db_accession A6LF92 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;DDNSYSLGDIWIAVATVVPEGNNVYYLRLDDGDKLWPAATNYPNYQPKPNQRALVNFTILADSTQSNLGGFSHYIKVNAI HNILTKSIAKNEGAANDSIYGTDPVSIYNNNMWIGDGYLNIYFETLWGGKTAHFINLIQPDAENDPYTLEFRHNAYDDPQ YTIGAGRVAFNLSSLPDTKGETVDLVVNYWTSEGKQAYKLKYNSDKTKMEDTSQGYTNDSISNITDMK ; _struct_ref.pdbx_align_begin 26 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3K0Y _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 229 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A6LF92 _struct_ref_seq.db_align_beg 26 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 253 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 26 _struct_ref_seq.pdbx_auth_seq_align_end 253 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3K0Y _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code A6LF92 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2PE non-polymer . 'NONAETHYLENE GLYCOL' ? 'C18 H38 O10' 414.488 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 2 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3K0Y # loop_ _exptl_crystal.id _exptl_crystal.density_Matthews _exptl_crystal.density_meas _exptl_crystal.density_percent_sol _exptl_crystal.description _exptl_crystal.F_000 _exptl_crystal.preparation 1 2.95 ? 58.35 ;THE STRUCTURE WAS PHASED BY MAD METHOD AT 2.46 A RESOLUTION AND REFINED AT 2.16 A RESOLUTION AGAINST A DATASET COLLECTED FROM A DIFFERENT CRYSTAL. ; ? ? 2 ? ? ? ? ? ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 5.79 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details ;5.0000% polyethylene glycol 3000, 44.0000% polyethylene glycol 400, 0.1M MES pH 5.79, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K, VAPOR DIFFUSION, SITTING DROP ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 1 ,0.91162 ? ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.details _diffrn_detector.pdbx_collection_date 1 CCD 'MARMOSAIC 325 mm CCD' 'Flat collimating mirror, toroid focusing mirror' 2009-07-31 2 CCD 'MARMOSAIC 325 mm CCD' 'Flat mirror (vertical focusing)' 2009-02-23 # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.monochromator _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_scattering_type 1 M 'Double crystal monochromator' MAD 1 x-ray 2 M 'Single crystal Si(111) bent monochromator (horizontal focusing)' MAD 1 x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97911 1.0 2 0.97835 1.0 3 0.97876 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.type _diffrn_source.pdbx_wavelength_list _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_synchrotron_site 1 SYNCHROTRON BL9-2 'SSRL BEAMLINE BL9-2' 0.97911 ? SSRL 2 SYNCHROTRON BL11-1 'SSRL BEAMLINE BL11-1' 0.97835,0.97876 ? SSRL ,0.91162 ? ? ? ? ? ? # _reflns.entry_id 3K0Y _reflns.d_resolution_high 2.16 _reflns.d_resolution_low 39.559 _reflns.number_obs 16892 _reflns.pdbx_Rmerge_I_obs 0.032 _reflns.pdbx_netI_over_sigmaI 19.280 _reflns.percent_possible_obs 99.400 _reflns.B_iso_Wilson_estimate 52.236 _reflns.observed_criterion_sigma_I -3.00 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1,2 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.16 2.24 9460 ? 3289 0.688 1.8 ? ? ? ? ? 99.50 1 1,2 2.24 2.33 8862 ? 3088 0.466 2.7 ? ? ? ? ? 99.30 2 1,2 2.33 2.43 8586 ? 2986 0.318 3.6 ? ? ? ? ? 99.70 3 1,2 2.43 2.56 9434 ? 3260 0.241 4.9 ? ? ? ? ? 99.60 4 1,2 2.56 2.72 8968 ? 3097 0.152 7.5 ? ? ? ? ? 99.50 5 1,2 2.72 2.93 9163 ? 3157 0.087 12.6 ? ? ? ? ? 99.40 6 1,2 2.93 3.22 9090 ? 3138 0.048 20.8 ? ? ? ? ? 99.60 7 1,2 3.22 3.69 9233 ? 3172 0.025 35.1 ? ? ? ? ? 99.40 8 1,2 3.69 4.64 9169 ? 3152 0.018 48.7 ? ? ? ? ? 99.50 9 1,2 4.64 39.559 9091 ? 3156 0.017 54.9 ? ? ? ? ? 98.30 10 1,2 # _refine.entry_id 3K0Y _refine.ls_d_res_high 2.160 _refine.ls_d_res_low 39.559 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.850 _refine.ls_number_reflns_obs 16861 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. PEG-400 (2PE) FRAGMENTS FROM THE CRYSTALLIZATION SOLUTION ARE MODELED. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.205 _refine.ls_R_factor_R_work 0.203 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.235 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 853 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 50.118 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -1.480 _refine.aniso_B[2][2] -1.480 _refine.aniso_B[3][3] 2.210 _refine.aniso_B[1][2] -0.740 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.954 _refine.correlation_coeff_Fo_to_Fc_free 0.937 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.189 _refine.pdbx_overall_ESU_R_Free 0.167 _refine.overall_SU_ML 0.129 _refine.overall_SU_B 10.948 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 92.69 _refine.B_iso_min 24.05 _refine.occupancy_max 1.00 _refine.occupancy_min 0.50 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1580 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 23 _refine_hist.number_atoms_solvent 56 _refine_hist.number_atoms_total 1659 _refine_hist.d_res_high 2.160 _refine_hist.d_res_low 39.559 # loop_ _refine_ls_restr.type _refine_ls_restr.pdbx_refine_id _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 'X-RAY DIFFRACTION' 1656 0.018 0.022 ? ? r_bond_other_d 'X-RAY DIFFRACTION' 1073 0.001 0.020 ? ? r_angle_refined_deg 'X-RAY DIFFRACTION' 2256 1.596 1.940 ? ? r_angle_other_deg 'X-RAY DIFFRACTION' 2627 0.850 3.000 ? ? r_dihedral_angle_1_deg 'X-RAY DIFFRACTION' 199 6.504 5.000 ? ? r_dihedral_angle_2_deg 'X-RAY DIFFRACTION' 82 39.016 25.366 ? ? r_dihedral_angle_3_deg 'X-RAY DIFFRACTION' 250 15.148 15.000 ? ? r_dihedral_angle_4_deg 'X-RAY DIFFRACTION' 4 17.405 15.000 ? ? r_chiral_restr 'X-RAY DIFFRACTION' 243 0.098 0.200 ? ? r_gen_planes_refined 'X-RAY DIFFRACTION' 1840 0.007 0.021 ? ? r_gen_planes_other 'X-RAY DIFFRACTION' 323 0.001 0.020 ? ? r_mcbond_it 'X-RAY DIFFRACTION' 992 0.922 1.500 ? ? r_mcbond_other 'X-RAY DIFFRACTION' 399 0.210 1.500 ? ? r_mcangle_it 'X-RAY DIFFRACTION' 1606 1.678 2.000 ? ? r_scbond_it 'X-RAY DIFFRACTION' 664 2.241 3.000 ? ? r_scangle_it 'X-RAY DIFFRACTION' 648 3.529 4.500 ? ? # _refine_ls_shell.d_res_high 2.160 _refine_ls_shell.d_res_low 2.216 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 100.000 _refine_ls_shell.number_reflns_R_work 1160 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.253 _refine_ls_shell.R_factor_R_free 0.291 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 62 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1222 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3K0Y _struct.title 'Crystal structure of Putative TOXIN related protein (YP_001303978.1) from Parabacteroides distasonis ATCC 8503 at 2.16 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;Putative TOXIN related protein, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, unknown function, TOXIN ; _struct_keywords.pdbx_keywords TOXIN _struct_keywords.entry_id 3K0Y # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.details 'ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY SUPPORTS THE ASSIGNMENT OF A MONOMER AS A SIGNIFICANT OLIGOMERIZATION STATE IN SOLUTION.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 93 ? ALA A 95 ? GLU A 117 ALA A 119 5 ? 3 HELX_P HELX_P2 2 ALA A 96 ? GLY A 102 ? ALA A 120 GLY A 126 1 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ASN 112 C ? ? ? 1_555 A MSE 113 N ? ? A ASN 136 A MSE 137 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale2 covale both ? A MSE 113 C ? ? ? 1_555 A TRP 114 N ? ? A MSE 137 A TRP 138 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale3 covale both ? A LYS 209 C ? ? ? 1_555 A MSE 210 N ? ? A LYS 233 A MSE 234 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale4 covale both ? A ASP 227 C ? ? ? 1_555 A MSE 228 N ? ? A ASP 251 A MSE 252 1_555 ? ? ? ? ? ? ? 1.345 ? ? covale5 covale both ? A MSE 228 C ? ? ? 1_555 A LYS 229 N ? ? A MSE 252 A LYS 253 1_555 ? ? ? ? ? ? ? 1.309 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 9 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel A 8 9 ? parallel B 1 2 ? anti-parallel B 2 3 ? parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 MSE A 113 ? GLY A 116 ? MSE A 137 GLY A 140 A 2 TYR A 119 ? TRP A 128 ? TYR A 143 TRP A 152 A 3 THR A 163 ? ASN A 172 ? THR A 187 ASN A 196 A 4 HIS A 74 ? SER A 88 ? HIS A 98 SER A 112 A 5 GLN A 52 ? ALA A 62 ? GLN A 76 ALA A 86 A 6 ILE A 11 ? GLY A 22 ? ILE A 35 GLY A 46 A 7 VAL A 25 ? LEU A 30 ? VAL A 49 LEU A 54 A 8 LYS A 35 ? THR A 41 ? LYS A 59 THR A 65 A 9 HIS A 74 ? SER A 88 ? HIS A 98 SER A 112 B 1 PHE A 135 ? ILE A 139 ? PHE A 159 ILE A 163 B 2 THR A 149 ? ASN A 155 ? THR A 173 ASN A 179 B 3 VAL A 184 ? THR A 192 ? VAL A 208 THR A 216 B 4 GLY A 195 ? TYR A 203 ? GLY A 219 TYR A 227 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TRP A 114 ? N TRP A 138 O ASN A 121 ? O ASN A 145 A 2 3 N TRP A 128 ? N TRP A 152 O THR A 163 ? O THR A 187 A 3 4 O ASN A 172 ? O ASN A 196 N LYS A 87 ? N LYS A 111 A 4 5 O HIS A 82 ? O HIS A 106 N LEU A 55 ? N LEU A 79 A 5 6 O VAL A 56 ? O VAL A 80 N ALA A 14 ? N ALA A 38 A 6 7 N VAL A 19 ? N VAL A 43 O TYR A 27 ? O TYR A 51 A 7 8 N LEU A 28 ? N LEU A 52 O LEU A 36 ? O LEU A 60 A 8 9 N TRP A 37 ? N TRP A 61 O HIS A 74 ? O HIS A 98 B 1 2 N ASN A 137 ? N ASN A 161 O ARG A 153 ? O ARG A 177 B 2 3 N LEU A 150 ? N LEU A 174 O VAL A 187 ? O VAL A 211 B 3 4 N LEU A 186 ? N LEU A 210 O LEU A 201 ? O LEU A 225 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 2PE 500 ? 3 'BINDING SITE FOR RESIDUE 2PE A 500' AC2 Software A 2PE 501 ? 4 'BINDING SITE FOR RESIDUE 2PE A 501' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 ASN A 111 ? ASN A 135 . ? 6_765 ? 2 AC1 3 ASN A 111 ? ASN A 135 . ? 1_555 ? 3 AC1 3 TRP A 114 ? TRP A 138 . ? 6_765 ? 4 AC2 4 ASN A 112 ? ASN A 136 . ? 1_555 ? 5 AC2 4 TRP A 114 ? TRP A 138 . ? 1_555 ? 6 AC2 4 TYR A 123 ? TYR A 147 . ? 1_555 ? 7 AC2 4 ARG A 168 ? ARG A 192 . ? 1_555 ? # _atom_sites.entry_id 3K0Y _atom_sites.fract_transf_matrix[1][1] 0.013943 _atom_sites.fract_transf_matrix[1][2] 0.008050 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016100 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009750 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 ASP 2 26 ? ? ? A . n A 1 3 ASP 3 27 ? ? ? A . n A 1 4 ASN 4 28 ? ? ? A . n A 1 5 SER 5 29 ? ? ? A . n A 1 6 TYR 6 30 ? ? ? A . n A 1 7 SER 7 31 ? ? ? A . n A 1 8 LEU 8 32 ? ? ? A . n A 1 9 GLY 9 33 ? ? ? A . n A 1 10 ASP 10 34 34 ASP ASP A . n A 1 11 ILE 11 35 35 ILE ILE A . n A 1 12 TRP 12 36 36 TRP TRP A . n A 1 13 ILE 13 37 37 ILE ILE A . n A 1 14 ALA 14 38 38 ALA ALA A . n A 1 15 VAL 15 39 39 VAL VAL A . n A 1 16 ALA 16 40 40 ALA ALA A . n A 1 17 THR 17 41 41 THR THR A . n A 1 18 VAL 18 42 42 VAL VAL A . n A 1 19 VAL 19 43 43 VAL VAL A . n A 1 20 PRO 20 44 44 PRO PRO A . n A 1 21 GLU 21 45 45 GLU GLU A . n A 1 22 GLY 22 46 46 GLY GLY A . n A 1 23 ASN 23 47 47 ASN ASN A . n A 1 24 ASN 24 48 48 ASN ASN A . n A 1 25 VAL 25 49 49 VAL VAL A . n A 1 26 TYR 26 50 50 TYR TYR A . n A 1 27 TYR 27 51 51 TYR TYR A . n A 1 28 LEU 28 52 52 LEU LEU A . n A 1 29 ARG 29 53 53 ARG ARG A . n A 1 30 LEU 30 54 54 LEU LEU A . n A 1 31 ASP 31 55 55 ASP ASP A . n A 1 32 ASP 32 56 56 ASP ASP A . n A 1 33 GLY 33 57 57 GLY GLY A . n A 1 34 ASP 34 58 58 ASP ASP A . n A 1 35 LYS 35 59 59 LYS LYS A . n A 1 36 LEU 36 60 60 LEU LEU A . n A 1 37 TRP 37 61 61 TRP TRP A . n A 1 38 PRO 38 62 62 PRO PRO A . n A 1 39 ALA 39 63 63 ALA ALA A . n A 1 40 ALA 40 64 64 ALA ALA A . n A 1 41 THR 41 65 65 THR THR A . n A 1 42 ASN 42 66 66 ASN ASN A . n A 1 43 TYR 43 67 67 TYR TYR A . n A 1 44 PRO 44 68 68 PRO PRO A . n A 1 45 ASN 45 69 69 ASN ASN A . n A 1 46 TYR 46 70 70 TYR TYR A . n A 1 47 GLN 47 71 71 GLN GLN A . n A 1 48 PRO 48 72 72 PRO PRO A . n A 1 49 LYS 49 73 73 LYS LYS A . n A 1 50 PRO 50 74 74 PRO PRO A . n A 1 51 ASN 51 75 75 ASN ASN A . n A 1 52 GLN 52 76 76 GLN GLN A . n A 1 53 ARG 53 77 77 ARG ARG A . n A 1 54 ALA 54 78 78 ALA ALA A . n A 1 55 LEU 55 79 79 LEU LEU A . n A 1 56 VAL 56 80 80 VAL VAL A . n A 1 57 ASN 57 81 81 ASN ASN A . n A 1 58 PHE 58 82 82 PHE PHE A . n A 1 59 THR 59 83 83 THR THR A . n A 1 60 ILE 60 84 84 ILE ILE A . n A 1 61 LEU 61 85 85 LEU LEU A . n A 1 62 ALA 62 86 86 ALA ALA A . n A 1 63 ASP 63 87 87 ASP ASP A . n A 1 64 SER 64 88 ? ? ? A . n A 1 65 THR 65 89 ? ? ? A . n A 1 66 GLN 66 90 ? ? ? A . n A 1 67 SER 67 91 ? ? ? A . n A 1 68 ASN 68 92 ? ? ? A . n A 1 69 LEU 69 93 ? ? ? A . n A 1 70 GLY 70 94 ? ? ? A . n A 1 71 GLY 71 95 ? ? ? A . n A 1 72 PHE 72 96 ? ? ? A . n A 1 73 SER 73 97 97 SER SER A . n A 1 74 HIS 74 98 98 HIS HIS A . n A 1 75 TYR 75 99 99 TYR TYR A . n A 1 76 ILE 76 100 100 ILE ILE A . n A 1 77 LYS 77 101 101 LYS LYS A . n A 1 78 VAL 78 102 102 VAL VAL A . n A 1 79 ASN 79 103 103 ASN ASN A . n A 1 80 ALA 80 104 104 ALA ALA A . n A 1 81 ILE 81 105 105 ILE ILE A . n A 1 82 HIS 82 106 106 HIS HIS A . n A 1 83 ASN 83 107 107 ASN ASN A . n A 1 84 ILE 84 108 108 ILE ILE A . n A 1 85 LEU 85 109 109 LEU LEU A . n A 1 86 THR 86 110 110 THR THR A . n A 1 87 LYS 87 111 111 LYS LYS A . n A 1 88 SER 88 112 112 SER SER A . n A 1 89 ILE 89 113 113 ILE ILE A . n A 1 90 ALA 90 114 114 ALA ALA A . n A 1 91 LYS 91 115 115 LYS LYS A . n A 1 92 ASN 92 116 116 ASN ASN A . n A 1 93 GLU 93 117 117 GLU GLU A . n A 1 94 GLY 94 118 118 GLY GLY A . n A 1 95 ALA 95 119 119 ALA ALA A . n A 1 96 ALA 96 120 120 ALA ALA A . n A 1 97 ASN 97 121 121 ASN ASN A . n A 1 98 ASP 98 122 122 ASP ASP A . n A 1 99 SER 99 123 123 SER SER A . n A 1 100 ILE 100 124 124 ILE ILE A . n A 1 101 TYR 101 125 125 TYR TYR A . n A 1 102 GLY 102 126 126 GLY GLY A . n A 1 103 THR 103 127 127 THR THR A . n A 1 104 ASP 104 128 128 ASP ASP A . n A 1 105 PRO 105 129 129 PRO PRO A . n A 1 106 VAL 106 130 130 VAL VAL A . n A 1 107 SER 107 131 131 SER SER A . n A 1 108 ILE 108 132 132 ILE ILE A . n A 1 109 TYR 109 133 133 TYR TYR A . n A 1 110 ASN 110 134 134 ASN ASN A . n A 1 111 ASN 111 135 135 ASN ASN A . n A 1 112 ASN 112 136 136 ASN ASN A . n A 1 113 MSE 113 137 137 MSE MSE A . n A 1 114 TRP 114 138 138 TRP TRP A . n A 1 115 ILE 115 139 139 ILE ILE A . n A 1 116 GLY 116 140 140 GLY GLY A . n A 1 117 ASP 117 141 141 ASP ASP A . n A 1 118 GLY 118 142 142 GLY GLY A . n A 1 119 TYR 119 143 143 TYR TYR A . n A 1 120 LEU 120 144 144 LEU LEU A . n A 1 121 ASN 121 145 145 ASN ASN A . n A 1 122 ILE 122 146 146 ILE ILE A . n A 1 123 TYR 123 147 147 TYR TYR A . n A 1 124 PHE 124 148 148 PHE PHE A . n A 1 125 GLU 125 149 149 GLU GLU A . n A 1 126 THR 126 150 150 THR THR A . n A 1 127 LEU 127 151 151 LEU LEU A . n A 1 128 TRP 128 152 152 TRP TRP A . n A 1 129 GLY 129 153 153 GLY GLY A . n A 1 130 GLY 130 154 154 GLY GLY A . n A 1 131 LYS 131 155 155 LYS LYS A . n A 1 132 THR 132 156 156 THR THR A . n A 1 133 ALA 133 157 157 ALA ALA A . n A 1 134 HIS 134 158 158 HIS HIS A . n A 1 135 PHE 135 159 159 PHE PHE A . n A 1 136 ILE 136 160 160 ILE ILE A . n A 1 137 ASN 137 161 161 ASN ASN A . n A 1 138 LEU 138 162 162 LEU LEU A . n A 1 139 ILE 139 163 163 ILE ILE A . n A 1 140 GLN 140 164 164 GLN GLN A . n A 1 141 PRO 141 165 165 PRO PRO A . n A 1 142 ASP 142 166 166 ASP ASP A . n A 1 143 ALA 143 167 167 ALA ALA A . n A 1 144 GLU 144 168 168 GLU GLU A . n A 1 145 ASN 145 169 169 ASN ASN A . n A 1 146 ASP 146 170 170 ASP ASP A . n A 1 147 PRO 147 171 171 PRO PRO A . n A 1 148 TYR 148 172 172 TYR TYR A . n A 1 149 THR 149 173 173 THR THR A . n A 1 150 LEU 150 174 174 LEU LEU A . n A 1 151 GLU 151 175 175 GLU GLU A . n A 1 152 PHE 152 176 176 PHE PHE A . n A 1 153 ARG 153 177 177 ARG ARG A . n A 1 154 HIS 154 178 178 HIS HIS A . n A 1 155 ASN 155 179 179 ASN ASN A . n A 1 156 ALA 156 180 180 ALA ALA A . n A 1 157 TYR 157 181 181 TYR TYR A . n A 1 158 ASP 158 182 182 ASP ASP A . n A 1 159 ASP 159 183 183 ASP ASP A . n A 1 160 PRO 160 184 184 PRO PRO A . n A 1 161 GLN 161 185 185 GLN GLN A . n A 1 162 TYR 162 186 186 TYR TYR A . n A 1 163 THR 163 187 187 THR THR A . n A 1 164 ILE 164 188 188 ILE ILE A . n A 1 165 GLY 165 189 189 GLY GLY A . n A 1 166 ALA 166 190 190 ALA ALA A . n A 1 167 GLY 167 191 191 GLY GLY A . n A 1 168 ARG 168 192 192 ARG ARG A . n A 1 169 VAL 169 193 193 VAL VAL A . n A 1 170 ALA 170 194 194 ALA ALA A . n A 1 171 PHE 171 195 195 PHE PHE A . n A 1 172 ASN 172 196 196 ASN ASN A . n A 1 173 LEU 173 197 197 LEU LEU A . n A 1 174 SER 174 198 198 SER SER A . n A 1 175 SER 175 199 199 SER SER A . n A 1 176 LEU 176 200 200 LEU LEU A . n A 1 177 PRO 177 201 201 PRO PRO A . n A 1 178 ASP 178 202 202 ASP ASP A . n A 1 179 THR 179 203 203 THR THR A . n A 1 180 LYS 180 204 204 LYS LYS A . n A 1 181 GLY 181 205 205 GLY GLY A . n A 1 182 GLU 182 206 206 GLU GLU A . n A 1 183 THR 183 207 207 THR THR A . n A 1 184 VAL 184 208 208 VAL VAL A . n A 1 185 ASP 185 209 209 ASP ASP A . n A 1 186 LEU 186 210 210 LEU LEU A . n A 1 187 VAL 187 211 211 VAL VAL A . n A 1 188 VAL 188 212 212 VAL VAL A . n A 1 189 ASN 189 213 213 ASN ASN A . n A 1 190 TYR 190 214 214 TYR TYR A . n A 1 191 TRP 191 215 215 TRP TRP A . n A 1 192 THR 192 216 216 THR THR A . n A 1 193 SER 193 217 217 SER SER A . n A 1 194 GLU 194 218 218 GLU GLU A . n A 1 195 GLY 195 219 219 GLY GLY A . n A 1 196 LYS 196 220 220 LYS LYS A . n A 1 197 GLN 197 221 221 GLN GLN A . n A 1 198 ALA 198 222 222 ALA ALA A . n A 1 199 TYR 199 223 223 TYR TYR A . n A 1 200 LYS 200 224 224 LYS LYS A . n A 1 201 LEU 201 225 225 LEU LEU A . n A 1 202 LYS 202 226 226 LYS LYS A . n A 1 203 TYR 203 227 227 TYR TYR A . n A 1 204 ASN 204 228 228 ASN ASN A . n A 1 205 SER 205 229 229 SER SER A . n A 1 206 ASP 206 230 230 ASP ASP A . n A 1 207 LYS 207 231 231 LYS LYS A . n A 1 208 THR 208 232 232 THR THR A . n A 1 209 LYS 209 233 233 LYS LYS A . n A 1 210 MSE 210 234 234 MSE MSE A . n A 1 211 GLU 211 235 ? ? ? A . n A 1 212 ASP 212 236 ? ? ? A . n A 1 213 THR 213 237 ? ? ? A . n A 1 214 SER 214 238 ? ? ? A . n A 1 215 GLN 215 239 ? ? ? A . n A 1 216 GLY 216 240 ? ? ? A . n A 1 217 TYR 217 241 ? ? ? A . n A 1 218 THR 218 242 ? ? ? A . n A 1 219 ASN 219 243 ? ? ? A . n A 1 220 ASP 220 244 ? ? ? A . n A 1 221 SER 221 245 ? ? ? A . n A 1 222 ILE 222 246 ? ? ? A . n A 1 223 SER 223 247 ? ? ? A . n A 1 224 ASN 224 248 248 ASN ASN A . n A 1 225 ILE 225 249 249 ILE ILE A . n A 1 226 THR 226 250 250 THR THR A . n A 1 227 ASP 227 251 251 ASP ASP A . n A 1 228 MSE 228 252 252 MSE MSE A . n A 1 229 LYS 229 253 253 LYS LYS A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2PE 1 500 500 2PE 2PE A . C 2 2PE 1 501 501 2PE 2PE A . D 3 HOH 1 502 502 HOH HOH A . D 3 HOH 2 503 503 HOH HOH A . D 3 HOH 3 504 504 HOH HOH A . D 3 HOH 4 505 505 HOH HOH A . D 3 HOH 5 506 506 HOH HOH A . D 3 HOH 6 507 507 HOH HOH A . D 3 HOH 7 508 508 HOH HOH A . D 3 HOH 8 509 509 HOH HOH A . D 3 HOH 9 510 510 HOH HOH A . D 3 HOH 10 511 511 HOH HOH A . D 3 HOH 11 512 512 HOH HOH A . D 3 HOH 12 513 513 HOH HOH A . D 3 HOH 13 514 514 HOH HOH A . D 3 HOH 14 515 515 HOH HOH A . D 3 HOH 15 516 516 HOH HOH A . D 3 HOH 16 517 517 HOH HOH A . D 3 HOH 17 518 518 HOH HOH A . D 3 HOH 18 519 519 HOH HOH A . D 3 HOH 19 520 520 HOH HOH A . D 3 HOH 20 521 521 HOH HOH A . D 3 HOH 21 522 522 HOH HOH A . D 3 HOH 22 523 523 HOH HOH A . D 3 HOH 23 524 524 HOH HOH A . D 3 HOH 24 525 525 HOH HOH A . D 3 HOH 25 526 526 HOH HOH A . D 3 HOH 26 527 527 HOH HOH A . D 3 HOH 27 528 528 HOH HOH A . D 3 HOH 28 529 529 HOH HOH A . D 3 HOH 29 530 530 HOH HOH A . D 3 HOH 30 531 531 HOH HOH A . D 3 HOH 31 532 532 HOH HOH A . D 3 HOH 32 533 533 HOH HOH A . D 3 HOH 33 534 534 HOH HOH A . D 3 HOH 34 535 535 HOH HOH A . D 3 HOH 35 536 536 HOH HOH A . D 3 HOH 36 537 537 HOH HOH A . D 3 HOH 37 538 538 HOH HOH A . D 3 HOH 38 539 539 HOH HOH A . D 3 HOH 39 540 540 HOH HOH A . D 3 HOH 40 541 541 HOH HOH A . D 3 HOH 41 542 542 HOH HOH A . D 3 HOH 42 543 543 HOH HOH A . D 3 HOH 43 544 544 HOH HOH A . D 3 HOH 44 545 545 HOH HOH A . D 3 HOH 45 546 546 HOH HOH A . D 3 HOH 46 547 547 HOH HOH A . D 3 HOH 47 548 548 HOH HOH A . D 3 HOH 48 549 549 HOH HOH A . D 3 HOH 49 550 550 HOH HOH A . D 3 HOH 50 551 551 HOH HOH A . D 3 HOH 51 552 552 HOH HOH A . D 3 HOH 52 553 553 HOH HOH A . D 3 HOH 53 554 554 HOH HOH A . D 3 HOH 54 555 555 HOH HOH A . D 3 HOH 55 556 556 HOH HOH A . D 3 HOH 56 557 557 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 113 A MSE 137 ? MET SELENOMETHIONINE 2 A MSE 210 A MSE 234 ? MET SELENOMETHIONINE 3 A MSE 228 A MSE 252 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-10-06 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2019-07-17 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Author supporting evidence' 4 3 'Structure model' 'Refinement description' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Refinement description' 8 5 'Structure model' 'Database references' 9 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_struct_assembly_auth_evidence 2 3 'Structure model' software 3 4 'Structure model' software 4 4 'Structure model' struct_conn 5 5 'Structure model' database_2 6 5 'Structure model' struct_ref_seq_dif 7 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_struct_ref_seq_dif.details' 15 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 51.4500 _pdbx_refine_tls.origin_y 19.0650 _pdbx_refine_tls.origin_z 5.9700 _pdbx_refine_tls.T[1][1] 0.1886 _pdbx_refine_tls.T[2][2] 0.1817 _pdbx_refine_tls.T[3][3] 0.0666 _pdbx_refine_tls.T[1][2] -0.0875 _pdbx_refine_tls.T[1][3] -0.0951 _pdbx_refine_tls.T[2][3] 0.0382 _pdbx_refine_tls.L[1][1] 2.3937 _pdbx_refine_tls.L[2][2] 3.7006 _pdbx_refine_tls.L[3][3] 1.3899 _pdbx_refine_tls.L[1][2] 1.5787 _pdbx_refine_tls.L[1][3] 0.8588 _pdbx_refine_tls.L[2][3] -0.0071 _pdbx_refine_tls.S[1][1] 0.1345 _pdbx_refine_tls.S[2][2] -0.1037 _pdbx_refine_tls.S[3][3] -0.0309 _pdbx_refine_tls.S[1][2] 0.0720 _pdbx_refine_tls.S[1][3] -0.0036 _pdbx_refine_tls.S[2][3] -0.1479 _pdbx_refine_tls.S[2][1] 0.0284 _pdbx_refine_tls.S[3][1] 0.1042 _pdbx_refine_tls.S[3][2] 0.0812 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 34 A 87 ? . . . . ? 'X-RAY DIFFRACTION' 2 1 A 97 A 234 ? . . . . ? 'X-RAY DIFFRACTION' 3 1 A 248 A 253 ? . . . . ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.5.0053 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 3 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 4 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 XDS . ? ? ? ? 'data reduction' ? ? ? 6 SHARP . ? ? ? ? phasing ? ? ? 7 autoSHARP . ? ? ? ? phasing ? ? ? 8 # _pdbx_entry_details.entry_id 3K0Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THIS CONSTRUCT (RESIDUE 26-253) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 192 ? ? CZ A ARG 192 ? ? NH1 A ARG 192 ? ? 123.67 120.30 3.37 0.50 N 2 1 NE A ARG 192 ? ? CZ A ARG 192 ? ? NH2 A ARG 192 ? ? 117.09 120.30 -3.21 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 45 ? ? -137.82 -44.89 2 1 ASN A 47 ? ? 48.43 -115.74 3 1 TYR A 67 ? ? -117.34 75.76 4 1 ALA A 86 ? ? -171.47 134.31 5 1 ASN A 135 ? ? 98.28 -6.86 6 1 ASP A 166 ? ? -151.93 84.82 7 1 ASP A 170 ? ? -153.97 59.18 8 1 TYR A 181 ? ? 50.34 -124.76 9 1 GLN A 185 ? ? -104.00 74.19 10 1 LYS A 204 ? ? 70.74 -128.06 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 115 ? CG ? A LYS 91 CG 2 1 Y 1 A LYS 115 ? CD ? A LYS 91 CD 3 1 Y 1 A LYS 115 ? CE ? A LYS 91 CE 4 1 Y 1 A LYS 115 ? NZ ? A LYS 91 NZ 5 1 Y 1 A GLU 168 ? CG ? A GLU 144 CG 6 1 Y 1 A GLU 168 ? CD ? A GLU 144 CD 7 1 Y 1 A GLU 168 ? OE1 ? A GLU 144 OE1 8 1 Y 1 A GLU 168 ? OE2 ? A GLU 144 OE2 9 1 N 1 A 2PE 500 ? C11 ? B 2PE 1 C11 10 1 N 1 A 2PE 500 ? C12 ? B 2PE 1 C12 11 1 N 1 A 2PE 500 ? O13 ? B 2PE 1 O13 12 1 N 1 A 2PE 500 ? C14 ? B 2PE 1 C14 13 1 N 1 A 2PE 500 ? C15 ? B 2PE 1 C15 14 1 N 1 A 2PE 500 ? O16 ? B 2PE 1 O16 15 1 N 1 A 2PE 500 ? C17 ? B 2PE 1 C17 16 1 N 1 A 2PE 500 ? C18 ? B 2PE 1 C18 17 1 N 1 A 2PE 500 ? O19 ? B 2PE 1 O19 18 1 N 1 A 2PE 500 ? C20 ? B 2PE 1 C20 19 1 N 1 A 2PE 500 ? C21 ? B 2PE 1 C21 20 1 N 1 A 2PE 500 ? O22 ? B 2PE 1 O22 21 1 N 1 A 2PE 500 ? C23 ? B 2PE 1 C23 22 1 N 1 A 2PE 500 ? C24 ? B 2PE 1 C24 23 1 N 1 A 2PE 500 ? O25 ? B 2PE 1 O25 24 1 N 1 A 2PE 500 ? C26 ? B 2PE 1 C26 25 1 N 1 A 2PE 500 ? C27 ? B 2PE 1 C27 26 1 N 1 A 2PE 500 ? O28 ? B 2PE 1 O28 27 1 N 1 A 2PE 501 ? C14 ? C 2PE 1 C14 28 1 N 1 A 2PE 501 ? C15 ? C 2PE 1 C15 29 1 N 1 A 2PE 501 ? O16 ? C 2PE 1 O16 30 1 N 1 A 2PE 501 ? C17 ? C 2PE 1 C17 31 1 N 1 A 2PE 501 ? C18 ? C 2PE 1 C18 32 1 N 1 A 2PE 501 ? O19 ? C 2PE 1 O19 33 1 N 1 A 2PE 501 ? C20 ? C 2PE 1 C20 34 1 N 1 A 2PE 501 ? C21 ? C 2PE 1 C21 35 1 N 1 A 2PE 501 ? O22 ? C 2PE 1 O22 36 1 N 1 A 2PE 501 ? C23 ? C 2PE 1 C23 37 1 N 1 A 2PE 501 ? C24 ? C 2PE 1 C24 38 1 N 1 A 2PE 501 ? O25 ? C 2PE 1 O25 39 1 N 1 A 2PE 501 ? C26 ? C 2PE 1 C26 40 1 N 1 A 2PE 501 ? C27 ? C 2PE 1 C27 41 1 N 1 A 2PE 501 ? O28 ? C 2PE 1 O28 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A ASP 26 ? A ASP 2 3 1 Y 1 A ASP 27 ? A ASP 3 4 1 Y 1 A ASN 28 ? A ASN 4 5 1 Y 1 A SER 29 ? A SER 5 6 1 Y 1 A TYR 30 ? A TYR 6 7 1 Y 1 A SER 31 ? A SER 7 8 1 Y 1 A LEU 32 ? A LEU 8 9 1 Y 1 A GLY 33 ? A GLY 9 10 1 Y 1 A SER 88 ? A SER 64 11 1 Y 1 A THR 89 ? A THR 65 12 1 Y 1 A GLN 90 ? A GLN 66 13 1 Y 1 A SER 91 ? A SER 67 14 1 Y 1 A ASN 92 ? A ASN 68 15 1 Y 1 A LEU 93 ? A LEU 69 16 1 Y 1 A GLY 94 ? A GLY 70 17 1 Y 1 A GLY 95 ? A GLY 71 18 1 Y 1 A PHE 96 ? A PHE 72 19 1 Y 1 A GLU 235 ? A GLU 211 20 1 Y 1 A ASP 236 ? A ASP 212 21 1 Y 1 A THR 237 ? A THR 213 22 1 Y 1 A SER 238 ? A SER 214 23 1 Y 1 A GLN 239 ? A GLN 215 24 1 Y 1 A GLY 240 ? A GLY 216 25 1 Y 1 A TYR 241 ? A TYR 217 26 1 Y 1 A THR 242 ? A THR 218 27 1 Y 1 A ASN 243 ? A ASN 219 28 1 Y 1 A ASP 244 ? A ASP 220 29 1 Y 1 A SER 245 ? A SER 221 30 1 Y 1 A ILE 246 ? A ILE 222 31 1 Y 1 A SER 247 ? A SER 223 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'NONAETHYLENE GLYCOL' 2PE 3 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #