HEADER HYDROLASE 25-SEP-09 3K11 TITLE CRYSTAL STRUCTURE OF PUTATIVE GLYCOSYL HYDROLASE (NP_813087.1) FROM TITLE 2 BACTEROIDES THETAIOTAOMICRON VPI-5482 AT 1.80 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE GLYCOSYL HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON VPI-5482; SOURCE 3 ORGANISM_TAXID: 226186; SOURCE 4 GENE: BT_4176; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PUTATIVE GLYCOSYL HYDROLASE, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, KEYWDS 3 UNKNOWN FUNCTION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 01-FEB-23 3K11 1 REMARK SEQADV REVDAT 5 17-JUL-19 3K11 1 REMARK LINK REVDAT 4 01-NOV-17 3K11 1 REMARK REVDAT 3 13-JUL-11 3K11 1 VERSN REVDAT 2 24-NOV-09 3K11 1 TITLE REVDAT 1 03-NOV-09 3K11 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE GLYCOSYL HYDROLASE JRNL TITL 2 (NP_813087.1) FROM BACTEROIDES THETAIOTAOMICRON VPI-5482 AT JRNL TITL 3 1.80 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 73676 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.171 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3714 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5066 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2190 REMARK 3 BIN FREE R VALUE SET COUNT : 260 REMARK 3 BIN FREE R VALUE : 0.2530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3489 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 88 REMARK 3 SOLVENT ATOMS : 468 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 22.14 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.61000 REMARK 3 B22 (A**2) : 1.61000 REMARK 3 B33 (A**2) : -2.42000 REMARK 3 B12 (A**2) : 0.81000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.077 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.077 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.055 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.425 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.966 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3821 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2614 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5181 ; 1.544 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6317 ; 1.080 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 472 ; 5.038 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 189 ;33.443 ;23.704 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 596 ;12.368 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;22.615 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 540 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4349 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 825 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 845 ; 0.225 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2831 ; 0.185 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1911 ; 0.191 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): 1829 ; 0.089 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 648 ; 0.178 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 15 ; 0.241 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 97 ; 0.239 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 60 ; 0.193 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2448 ; 1.988 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 920 ; 0.549 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3692 ; 2.535 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1726 ; 4.819 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1489 ; 6.089 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 26 A 464 REMARK 3 ORIGIN FOR THE GROUP (A): 17.1713 48.4717 21.7161 REMARK 3 T TENSOR REMARK 3 T11: -0.0208 T22: -0.0442 REMARK 3 T33: -0.0177 T12: 0.0426 REMARK 3 T13: 0.0165 T23: -0.0065 REMARK 3 L TENSOR REMARK 3 L11: 0.3503 L22: 0.1303 REMARK 3 L33: 0.4833 L12: -0.1002 REMARK 3 L13: -0.0358 L23: 0.0322 REMARK 3 S TENSOR REMARK 3 S11: -0.0172 S12: 0.0223 S13: -0.0716 REMARK 3 S21: -0.0127 S22: -0.0035 S23: -0.0159 REMARK 3 S31: 0.1506 S32: 0.0888 S33: 0.0207 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1.HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2.ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY REMARK 3 3.A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE REMARK 3 ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REMARK 3 REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4.2- REMARK 3 (N-MORPHOLINO)ETHANESULFONIC ACID (MES)AND ETHYLENE GLYCOL (EDO) REMARK 3 MOLECULES MODELED IN THE STRUCTURE WERE PRESENT IN REMARK 3 CRYSTALLIZATION BUFFER/CRYOPROTECTANT. REMARK 4 REMARK 4 3K11 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1000055410. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91162,0.97936,0.97919 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.5 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73725 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 29.988 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : 0.10100 REMARK 200 FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.76400 REMARK 200 R SYM FOR SHELL (I) : 0.76400 REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5.0000% PEG-6000, 0.1M MES PH 6.0, REMARK 280 NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 91.40600 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 91.40600 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 91.40600 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 91.40600 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 91.40600 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 91.40600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 21320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 136.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 60.56750 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 104.90599 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -60.56750 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 104.90599 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 513 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 689 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 LYS A 22 REMARK 465 LYS A 23 REMARK 465 ALA A 24 REMARK 465 VAL A 25 REMARK 465 GLU A 465 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 121 CD CE NZ REMARK 470 LYS A 150 CE NZ REMARK 470 GLU A 182 CG CD OE1 OE2 REMARK 470 LYS A 239 CG CD CE NZ REMARK 470 GLU A 451 CD OE1 OE2 REMARK 470 SER A 464 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 88 O1 EDO A 16 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 236 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ASP A 258 CB - CG - OD1 ANGL. DEV. = 7.6 DEGREES REMARK 500 ARG A 269 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 69 71.72 -102.12 REMARK 500 ALA A 167 -47.04 -141.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 8 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 9 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 10 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 11 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 12 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 13 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 14 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 15 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 16 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 17 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 18 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 19 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 20 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 396201 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. THE CLONED REMARK 999 CONSTRUCT CONTAINS RESIDUES 22-465 OF THE FULL LENGTH PROTEIN. DBREF 3K11 A 22 465 UNP Q8A045 Q8A045_BACTN 22 465 SEQADV 3K11 GLY A 0 UNP Q8A045 EXPRESSION TAG SEQRES 1 A 445 GLY LYS LYS ALA VAL ILE ASN ASP SER ASN THR PRO LEU SEQRES 2 A 445 HIS LEU LEU GLN PRO ALA TYR GLN GLY THR TYR GLY ASP SEQRES 3 A 445 LEU THR PRO GLU GLN VAL LYS LYS ASP ILE ASP ARG VAL SEQRES 4 A 445 PHE ALA TYR ILE ASP LYS GLU THR PRO ALA ARG VAL VAL SEQRES 5 A 445 ASP LYS ASN THR GLY LYS VAL ILE THR ASP TYR THR ALA SEQRES 6 A 445 MSE GLY ASP GLU ALA GLN LEU GLU ARG GLY ALA PHE ARG SEQRES 7 A 445 LEU ALA SER TYR GLU TRP GLY VAL THR TYR SER ALA LEU SEQRES 8 A 445 ILE ALA ALA ALA GLU THR THR GLY ASP LYS ARG TYR THR SEQRES 9 A 445 ASP TYR VAL GLN ASN ARG PHE ARG PHE LEU ALA GLU VAL SEQRES 10 A 445 ALA PRO HIS PHE LYS ARG VAL TYR GLU GLU LYS GLY LYS SEQRES 11 A 445 THR ASP SER GLN LEU LEU GLN ILE LEU THR PRO HIS ALA SEQRES 12 A 445 LEU ASP ASP ALA GLY ALA VAL CYS THR ALA MSE ILE LYS SEQRES 13 A 445 LEU ARG LEU LYS ASP GLU SER LEU PRO VAL ASP GLY LEU SEQRES 14 A 445 ILE GLN ASN TYR PHE ASP PHE ILE ILE ASN LYS GLU TYR SEQRES 15 A 445 ARG LEU ALA ASP GLY THR PHE ALA ARG ASN ARG PRO GLN SEQRES 16 A 445 ARG ASN THR LEU TRP LEU ASP ASP MSE PHE MSE GLY ILE SEQRES 17 A 445 PRO ALA VAL ALA GLN MSE SER ARG TYR ASP LYS GLU ALA SEQRES 18 A 445 LYS ASN LYS TYR LEU ALA GLU ALA VAL LYS GLN PHE LEU SEQRES 19 A 445 GLN PHE ALA ASP ARG MSE PHE ILE PRO GLU LYS GLY LEU SEQRES 20 A 445 TYR ARG HIS GLY TRP VAL GLU SER SER THR ASP HIS PRO SEQRES 21 A 445 ALA PHE CYS TRP ALA ARG ALA ASN GLY TRP ALA LEU LEU SEQRES 22 A 445 THR ALA CYS GLU LEU LEU ASP VAL LEU PRO GLU ASP TYR SEQRES 23 A 445 PRO GLN ARG PRO LYS VAL MSE ASP TYR PHE ARG ALA HIS SEQRES 24 A 445 VAL ARG GLY VAL THR ALA LEU GLN SER GLY GLU GLY PHE SEQRES 25 A 445 TRP HIS GLN LEU LEU ASP CYS ASN ASP SER TYR LEU GLU SEQRES 26 A 445 THR SER ALA THR ALA ILE TYR VAL TYR CYS LEU ALA HIS SEQRES 27 A 445 ALA ILE ASN LYS GLY TRP ILE ASP ALA ILE ALA TYR GLY SEQRES 28 A 445 PRO VAL ALA GLN LEU GLY TRP HIS ALA VAL ALA GLY LYS SEQRES 29 A 445 ILE ASN GLU GLU GLY GLN VAL GLU GLY THR CYS VAL GLY SEQRES 30 A 445 THR GLY MSE ALA PHE ASP PRO ALA PHE TYR TYR TYR ARG SEQRES 31 A 445 PRO VAL ASN VAL TYR ALA ALA HIS GLY TYR GLY PRO VAL SEQRES 32 A 445 LEU TRP ALA GLY ALA GLU MSE ILE ARG LEU LEU ASN THR SEQRES 33 A 445 GLN HIS PRO GLN MSE ASN ASP SER ALA VAL GLN TYR TYR SEQRES 34 A 445 GLN GLU LYS GLN LYS THR THR ALA PRO ILE PHE ALA VAL SEQRES 35 A 445 ASP SER GLU MODRES 3K11 MSE A 86 MET SELENOMETHIONINE MODRES 3K11 MSE A 174 MET SELENOMETHIONINE MODRES 3K11 MSE A 224 MET SELENOMETHIONINE MODRES 3K11 MSE A 226 MET SELENOMETHIONINE MODRES 3K11 MSE A 234 MET SELENOMETHIONINE MODRES 3K11 MSE A 260 MET SELENOMETHIONINE MODRES 3K11 MSE A 313 MET SELENOMETHIONINE MODRES 3K11 MSE A 400 MET SELENOMETHIONINE MODRES 3K11 MSE A 430 MET SELENOMETHIONINE MODRES 3K11 MSE A 441 MET SELENOMETHIONINE HET MSE A 86 16 HET MSE A 174 8 HET MSE A 224 8 HET MSE A 226 8 HET MSE A 234 8 HET MSE A 260 8 HET MSE A 313 8 HET MSE A 400 8 HET MSE A 430 8 HET MSE A 441 8 HET EDO A 1 4 HET EDO A 2 4 HET EDO A 3 4 HET EDO A 4 4 HET EDO A 5 4 HET EDO A 6 4 HET EDO A 7 4 HET EDO A 8 4 HET EDO A 9 4 HET EDO A 10 4 HET EDO A 11 4 HET EDO A 12 4 HET EDO A 13 4 HET EDO A 14 4 HET EDO A 15 4 HET EDO A 16 4 HET EDO A 17 4 HET EDO A 18 4 HET EDO A 19 4 HET MES A 20 12 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 2 EDO 19(C2 H6 O2) FORMUL 21 MES C6 H13 N O4 S FORMUL 22 HOH *468(H2 O) HELIX 1 1 PRO A 32 LEU A 36 5 5 HELIX 2 2 THR A 48 GLU A 66 1 19 HELIX 3 3 SER A 101 GLY A 119 1 19 HELIX 4 4 ASP A 120 GLY A 149 1 30 HELIX 5 5 ASP A 152 THR A 160 1 9 HELIX 6 6 ALA A 163 ASP A 166 5 4 HELIX 7 7 ALA A 167 ASP A 181 1 15 HELIX 8 8 VAL A 186 LYS A 200 1 15 HELIX 9 9 LEU A 221 ASP A 238 1 18 HELIX 10 10 ALA A 241 PHE A 261 1 21 HELIX 11 11 TRP A 284 LEU A 302 1 19 HELIX 12 12 GLN A 308 ALA A 325 1 18 HELIX 13 13 THR A 346 LYS A 362 1 17 HELIX 14 14 ASP A 366 GLY A 383 1 18 HELIX 15 15 ASP A 403 TYR A 409 1 7 HELIX 16 16 ALA A 416 HIS A 418 5 3 HELIX 17 17 GLY A 419 GLN A 437 1 19 SHEET 1 A 3 VAL A 79 ILE A 80 0 SHEET 2 A 3 VAL A 71 ASP A 73 -1 N VAL A 71 O ILE A 80 SHEET 3 A 3 ALA A 90 LEU A 92 -1 O GLN A 91 N VAL A 72 SHEET 1 B 2 THR A 218 TRP A 220 0 SHEET 2 B 2 GLY A 271 VAL A 273 -1 O TRP A 272 N LEU A 219 SHEET 1 C 2 TRP A 333 HIS A 334 0 SHEET 2 C 2 LEU A 344 GLU A 345 -1 O GLU A 345 N TRP A 333 SHEET 1 D 2 GLN A 440 ASN A 442 0 SHEET 2 D 2 ALA A 445 GLN A 447 -1 O GLN A 447 N GLN A 440 LINK C ALA A 85 N AMSE A 86 1555 1555 1.32 LINK C ALA A 85 N BMSE A 86 1555 1555 1.34 LINK C AMSE A 86 N GLY A 87 1555 1555 1.33 LINK C BMSE A 86 N GLY A 87 1555 1555 1.34 LINK C ALA A 173 N MSE A 174 1555 1555 1.34 LINK C MSE A 174 N ILE A 175 1555 1555 1.35 LINK C ASP A 223 N MSE A 224 1555 1555 1.34 LINK C MSE A 224 N PHE A 225 1555 1555 1.33 LINK C PHE A 225 N MSE A 226 1555 1555 1.32 LINK C MSE A 226 N GLY A 227 1555 1555 1.32 LINK C GLN A 233 N MSE A 234 1555 1555 1.33 LINK C MSE A 234 N SER A 235 1555 1555 1.34 LINK C ARG A 259 N MSE A 260 1555 1555 1.32 LINK C MSE A 260 N PHE A 261 1555 1555 1.34 LINK C VAL A 312 N MSE A 313 1555 1555 1.32 LINK C MSE A 313 N ASP A 314 1555 1555 1.31 LINK C GLY A 399 N MSE A 400 1555 1555 1.33 LINK C MSE A 400 N ALA A 401 1555 1555 1.32 LINK C GLU A 429 N MSE A 430 1555 1555 1.32 LINK C MSE A 430 N ILE A 431 1555 1555 1.32 LINK C GLN A 440 N MSE A 441 1555 1555 1.32 LINK C MSE A 441 N ASN A 442 1555 1555 1.32 CISPEP 1 ARG A 213 PRO A 214 0 -3.84 SITE 1 AC1 7 PRO A 49 LYS A 53 ILE A 431 ASN A 435 SITE 2 AC1 7 HOH A 781 HOH A 864 HOH A 868 SITE 1 AC2 7 GLN A 41 GLY A 42 THR A 43 GLY A 329 SITE 2 AC2 7 GLU A 330 TYR A 409 HOH A 544 SITE 1 AC3 7 EDO A 7 ASP A 278 HIS A 279 ARG A 321 SITE 2 AC3 7 HOH A 557 HOH A 653 HOH A 676 SITE 1 AC4 5 LYS A 311 TYR A 315 HOH A 581 HOH A 733 SITE 2 AC4 5 HOH A 809 SITE 1 AC5 6 EDO A 12 ASP A 300 VAL A 301 LEU A 302 SITE 2 AC5 6 GLU A 304 HOH A 599 SITE 1 AC6 7 THR A 277 ARG A 317 GLY A 363 TRP A 364 SITE 2 AC6 7 ILE A 365 ASP A 366 HOH A 622 SITE 1 AC7 5 EDO A 3 ARG A 269 HIS A 279 ALA A 281 SITE 2 AC7 5 HOH A 801 SITE 1 AC8 7 EDO A 9 TYR A 102 ASP A 165 ARG A 211 SITE 2 AC8 7 ARG A 213 ASP A 222 MSE A 226 SITE 1 AC9 5 EDO A 8 HIS A 34 ARG A 213 GLY A 399 SITE 2 AC9 5 ASP A 443 SITE 1 BC1 3 ASN A 340 SER A 342 HOH A 501 SITE 1 BC2 5 ASP A 341 TYR A 409 HOH A 494 HOH A 863 SITE 2 BC2 5 HOH A 877 SITE 1 BC3 6 EDO A 5 LYS A 242 PRO A 303 HOH A 722 SITE 2 BC3 6 HOH A 741 HOH A 914 SITE 1 BC4 7 GLU A 264 LYS A 265 GLY A 266 GLY A 322 SITE 2 BC4 7 HOH A 521 HOH A 705 HOH A 926 SITE 1 BC5 7 LYS A 78 TYR A 343 LEU A 344 VAL A 412 SITE 2 BC5 7 HOH A 646 HOH A 731 HOH A 820 SITE 1 BC6 4 LEU A 179 LYS A 180 ASP A 181 GLU A 182 SITE 1 BC7 5 LYS A 74 ASP A 88 THR A 151 ASP A 152 SITE 2 BC7 5 HOH A 677 SITE 1 BC8 3 THR A 124 GLN A 128 HOH A 764 SITE 1 BC9 5 GLN A 37 TYR A 44 MSE A 441 HOH A 556 SITE 2 BC9 5 HOH A 669 SITE 1 CC1 4 GLY A 383 ASN A 386 GLU A 392 HOH A 799 SITE 1 CC2 7 LYS A 454 PHE A 460 ALA A 461 ASP A 463 SITE 2 CC2 7 HOH A 487 HOH A 719 HOH A 746 CRYST1 121.135 121.135 182.812 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008255 0.004766 0.000000 0.00000 SCALE2 0.000000 0.009532 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005470 0.00000