HEADER TRANSCRIPTION 28-SEP-09 3K1N TITLE CRYSTAL STRUCTURE OF FULL-LENGTH BENM COMPND MOL_ID: 1; COMPND 2 MOLECULE: HTH-TYPE TRANSCRIPTIONAL REGULATOR BENM; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BEN AND CAT OPERON TRANSCRIPTIONAL REGULATOR; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER SP.; SOURCE 3 ORGANISM_TAXID: 62977; SOURCE 4 STRAIN: ADP1; SOURCE 5 GENE: ACIAD1435, BENM, BENR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21B KEYWDS HTH, LYSR-TYPE TRANSCRIPTIONAL REGULATOR, ACTIVATOR, AROMATIC KEYWDS 2 HYDROCARBONS CATABOLISM, DNA-BINDING, TRANSCRIPTION, TRANSCRIPTION KEYWDS 3 REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR A.RUANGPRASERT,C.MOMANY,E.L.NEIDLE,S.H.CRAVEN REVDAT 3 06-SEP-23 3K1N 1 REMARK SEQADV REVDAT 2 01-NOV-17 3K1N 1 REMARK REVDAT 1 29-SEP-10 3K1N 0 JRNL AUTH A.RUANGPRASERT,S.H.CRAVEN,E.L.NEIDLE,C.MOMANY JRNL TITL STRUCTURE OF FULL-LENGTH BENM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0088 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.9 REMARK 3 NUMBER OF REFLECTIONS : 16796 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 875 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.99 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.07 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1065 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.2000 REMARK 3 BIN FREE R VALUE SET COUNT : 65 REMARK 3 BIN FREE R VALUE : 0.1680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4860 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 263 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.72 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.89000 REMARK 3 B22 (A**2) : 16.23000 REMARK 3 B33 (A**2) : -24.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.069 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.206 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 24.358 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4972 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6734 ; 1.221 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 606 ; 5.389 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 223 ;36.754 ;23.767 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 895 ;17.325 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;15.351 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 767 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3718 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3042 ; 2.517 ; 6.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4946 ; 3.870 ; 8.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1930 ; 0.943 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1788 ; 1.525 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.575 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : K, H, -L REMARK 3 TWIN FRACTION : 0.425 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 15 REMARK 3 ORIGIN FOR THE GROUP (A): 41.8490 -13.7670 27.4190 REMARK 3 T TENSOR REMARK 3 T11: 0.6091 T22: 0.2428 REMARK 3 T33: 0.6434 T12: -0.1085 REMARK 3 T13: -0.1742 T23: -0.1668 REMARK 3 L TENSOR REMARK 3 L11: 7.5598 L22: 3.2726 REMARK 3 L33: 9.7521 L12: -4.7147 REMARK 3 L13: -1.5458 L23: 1.1542 REMARK 3 S TENSOR REMARK 3 S11: 0.0248 S12: -0.3149 S13: 0.8982 REMARK 3 S21: 0.3512 S22: 0.2959 S23: -0.8112 REMARK 3 S31: -0.6252 S32: 1.1571 S33: -0.3207 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 16 A 55 REMARK 3 ORIGIN FOR THE GROUP (A): 49.0230 -16.9450 31.3850 REMARK 3 T TENSOR REMARK 3 T11: 0.5087 T22: 0.6606 REMARK 3 T33: 0.7265 T12: -0.0005 REMARK 3 T13: -0.2716 T23: -0.1718 REMARK 3 L TENSOR REMARK 3 L11: 3.6588 L22: 5.4312 REMARK 3 L33: 4.4794 L12: 4.3015 REMARK 3 L13: -4.0091 L23: -4.8905 REMARK 3 S TENSOR REMARK 3 S11: 0.0339 S12: 0.2650 S13: 0.0541 REMARK 3 S21: -0.1763 S22: 0.0182 S23: -0.0228 REMARK 3 S31: 0.0893 S32: -0.1316 S33: -0.0521 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 56 A 67 REMARK 3 ORIGIN FOR THE GROUP (A): 41.7340 -25.3960 23.5170 REMARK 3 T TENSOR REMARK 3 T11: 0.5786 T22: 0.3425 REMARK 3 T33: 0.6478 T12: -0.0171 REMARK 3 T13: -0.0276 T23: 0.0173 REMARK 3 L TENSOR REMARK 3 L11: 11.1094 L22: 5.4916 REMARK 3 L33: 4.2039 L12: -7.1399 REMARK 3 L13: 3.8480 L23: -0.8648 REMARK 3 S TENSOR REMARK 3 S11: -0.1214 S12: -0.1609 S13: 0.7307 REMARK 3 S21: 0.2281 S22: 0.4846 S23: -0.8463 REMARK 3 S31: 0.2457 S32: 0.6210 S33: -0.3632 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 68 A 92 REMARK 3 ORIGIN FOR THE GROUP (A): 23.6290 -8.5440 16.4700 REMARK 3 T TENSOR REMARK 3 T11: 0.9140 T22: 0.4375 REMARK 3 T33: 0.4326 T12: 0.1847 REMARK 3 T13: -0.0137 T23: -0.1751 REMARK 3 L TENSOR REMARK 3 L11: 1.7959 L22: 2.9281 REMARK 3 L33: 2.0404 L12: 1.5270 REMARK 3 L13: 1.7161 L23: 0.6582 REMARK 3 S TENSOR REMARK 3 S11: -0.0266 S12: -0.5231 S13: 0.2669 REMARK 3 S21: 0.2659 S22: -0.2562 S23: 0.2885 REMARK 3 S31: -0.2972 S32: -0.5883 S33: 0.2828 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 93 A 112 REMARK 3 ORIGIN FOR THE GROUP (A): 17.0920 -19.8780 0.7150 REMARK 3 T TENSOR REMARK 3 T11: 0.4536 T22: 0.1744 REMARK 3 T33: 0.3837 T12: 0.0329 REMARK 3 T13: 0.0038 T23: 0.0162 REMARK 3 L TENSOR REMARK 3 L11: 0.1068 L22: 0.5201 REMARK 3 L33: 2.6567 L12: -0.2215 REMARK 3 L13: 0.1594 L23: -0.6935 REMARK 3 S TENSOR REMARK 3 S11: -0.1243 S12: -0.0665 S13: -0.0854 REMARK 3 S21: 0.2766 S22: 0.1213 S23: 0.1639 REMARK 3 S31: -0.1770 S32: 0.3267 S33: 0.0030 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 113 A 155 REMARK 3 ORIGIN FOR THE GROUP (A): 7.5760 -15.2030 -2.0760 REMARK 3 T TENSOR REMARK 3 T11: 0.4880 T22: 0.0730 REMARK 3 T33: 0.2372 T12: 0.0008 REMARK 3 T13: 0.0008 T23: 0.0095 REMARK 3 L TENSOR REMARK 3 L11: 3.1684 L22: 0.6072 REMARK 3 L33: 5.3947 L12: -0.5250 REMARK 3 L13: 0.1072 L23: 0.6629 REMARK 3 S TENSOR REMARK 3 S11: -0.2072 S12: 0.0924 S13: 0.0813 REMARK 3 S21: 0.0917 S22: 0.0500 S23: 0.0339 REMARK 3 S31: -0.3248 S32: -0.4271 S33: 0.1572 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 156 A 169 REMARK 3 ORIGIN FOR THE GROUP (A): 20.2160 -26.2500 -13.6630 REMARK 3 T TENSOR REMARK 3 T11: 0.4144 T22: 0.1766 REMARK 3 T33: 0.2104 T12: 0.0028 REMARK 3 T13: -0.0272 T23: -0.0357 REMARK 3 L TENSOR REMARK 3 L11: 1.4039 L22: 6.3594 REMARK 3 L33: 0.4342 L12: -1.1399 REMARK 3 L13: -0.6819 L23: 1.2061 REMARK 3 S TENSOR REMARK 3 S11: 0.0298 S12: 0.0574 S13: 0.1388 REMARK 3 S21: 0.2204 S22: 0.0853 S23: -0.2510 REMARK 3 S31: -0.0048 S32: 0.0505 S33: -0.1151 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 170 A 232 REMARK 3 ORIGIN FOR THE GROUP (A): 15.4790 -37.3170 -16.9260 REMARK 3 T TENSOR REMARK 3 T11: 0.4078 T22: 0.1147 REMARK 3 T33: 0.2559 T12: 0.0231 REMARK 3 T13: -0.0094 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.8863 L22: 2.0493 REMARK 3 L33: 2.5451 L12: -0.2699 REMARK 3 L13: -0.2906 L23: -0.5800 REMARK 3 S TENSOR REMARK 3 S11: 0.0417 S12: 0.1202 S13: 0.0329 REMARK 3 S21: 0.0012 S22: 0.0484 S23: 0.2021 REMARK 3 S31: 0.0308 S32: -0.2177 S33: -0.0901 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 233 A 294 REMARK 3 ORIGIN FOR THE GROUP (A): 19.1720 -23.5150 -8.3600 REMARK 3 T TENSOR REMARK 3 T11: 0.3781 T22: 0.1311 REMARK 3 T33: 0.2355 T12: -0.0417 REMARK 3 T13: -0.0029 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 0.7312 L22: 2.3589 REMARK 3 L33: 0.4034 L12: -0.5125 REMARK 3 L13: 0.0264 L23: 0.5885 REMARK 3 S TENSOR REMARK 3 S11: -0.0089 S12: -0.0133 S13: 0.1306 REMARK 3 S21: -0.1355 S22: 0.0957 S23: -0.0912 REMARK 3 S31: -0.1326 S32: 0.1586 S33: -0.0868 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 295 A 303 REMARK 3 ORIGIN FOR THE GROUP (A): 26.1790 -12.6950 -8.8210 REMARK 3 T TENSOR REMARK 3 T11: 0.6507 T22: 0.5868 REMARK 3 T33: 0.6315 T12: 0.0862 REMARK 3 T13: -0.1458 T23: -0.1291 REMARK 3 L TENSOR REMARK 3 L11: 11.2434 L22: 5.6504 REMARK 3 L33: 3.2069 L12: -2.3302 REMARK 3 L13: -5.3281 L23: -0.5226 REMARK 3 S TENSOR REMARK 3 S11: 0.2326 S12: 0.8789 S13: 0.8949 REMARK 3 S21: 0.0964 S22: -0.3318 S23: -0.8574 REMARK 3 S31: -0.2185 S32: -0.3760 S33: 0.0992 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 43 REMARK 3 ORIGIN FOR THE GROUP (A): 47.0420 -66.1860 -57.4130 REMARK 3 T TENSOR REMARK 3 T11: 0.5154 T22: 0.1349 REMARK 3 T33: 0.3325 T12: 0.0484 REMARK 3 T13: 0.0372 T23: 0.0643 REMARK 3 L TENSOR REMARK 3 L11: 5.2947 L22: 7.4720 REMARK 3 L33: 9.1049 L12: -3.3361 REMARK 3 L13: -2.9992 L23: -1.0159 REMARK 3 S TENSOR REMARK 3 S11: 0.0059 S12: -0.2697 S13: 0.3000 REMARK 3 S21: 0.2218 S22: -0.2254 S23: -0.0516 REMARK 3 S31: -0.2248 S32: -0.0703 S33: 0.2195 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 44 B 81 REMARK 3 ORIGIN FOR THE GROUP (A): 50.3630 -62.0270 -66.3490 REMARK 3 T TENSOR REMARK 3 T11: 0.5367 T22: 0.2181 REMARK 3 T33: 0.2669 T12: -0.0109 REMARK 3 T13: -0.0036 T23: 0.0873 REMARK 3 L TENSOR REMARK 3 L11: 3.4415 L22: 7.9566 REMARK 3 L33: 0.9183 L12: -2.9246 REMARK 3 L13: -0.3399 L23: -1.8985 REMARK 3 S TENSOR REMARK 3 S11: -0.2075 S12: -0.2154 S13: 0.0293 REMARK 3 S21: -0.1167 S22: -0.0247 S23: -0.7274 REMARK 3 S31: 0.1487 S32: 0.0857 S33: 0.2322 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 82 B 92 REMARK 3 ORIGIN FOR THE GROUP (A): 31.2910 -33.8860 -60.9300 REMARK 3 T TENSOR REMARK 3 T11: 0.8796 T22: 0.4472 REMARK 3 T33: 0.5788 T12: 0.0581 REMARK 3 T13: -0.0215 T23: -0.1078 REMARK 3 L TENSOR REMARK 3 L11: 1.9023 L22: 3.8942 REMARK 3 L33: 3.9030 L12: -2.7212 REMARK 3 L13: -2.7232 L23: 3.8976 REMARK 3 S TENSOR REMARK 3 S11: -0.0422 S12: -0.0602 S13: 0.0890 REMARK 3 S21: 0.1084 S22: 0.1060 S23: -0.0979 REMARK 3 S31: 0.1118 S32: 0.0461 S33: -0.0638 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 93 B 112 REMARK 3 ORIGIN FOR THE GROUP (A): 15.1880 -18.7770 -47.7930 REMARK 3 T TENSOR REMARK 3 T11: 0.3750 T22: 0.1235 REMARK 3 T33: 0.2384 T12: 0.0015 REMARK 3 T13: 0.0017 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 3.6228 L22: 1.4540 REMARK 3 L33: 2.4106 L12: -1.0397 REMARK 3 L13: -0.7360 L23: 0.4057 REMARK 3 S TENSOR REMARK 3 S11: 0.1190 S12: 0.1216 S13: 0.0340 REMARK 3 S21: -0.0337 S22: 0.0730 S23: 0.1606 REMARK 3 S31: -0.1998 S32: -0.1922 S33: -0.1920 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 113 B 137 REMARK 3 ORIGIN FOR THE GROUP (A): 19.5110 -27.6700 -49.2410 REMARK 3 T TENSOR REMARK 3 T11: 0.3434 T22: 0.0894 REMARK 3 T33: 0.1695 T12: 0.0047 REMARK 3 T13: -0.0286 T23: -0.0506 REMARK 3 L TENSOR REMARK 3 L11: 4.3118 L22: 3.9175 REMARK 3 L33: 3.3862 L12: 0.0605 REMARK 3 L13: -0.9326 L23: -0.8369 REMARK 3 S TENSOR REMARK 3 S11: 0.0225 S12: 0.1428 S13: 0.0703 REMARK 3 S21: -0.4917 S22: 0.0967 S23: 0.2967 REMARK 3 S31: 0.3993 S32: 0.1680 S33: -0.1192 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 138 B 160 REMARK 3 ORIGIN FOR THE GROUP (A): 20.0420 -26.6480 -37.2930 REMARK 3 T TENSOR REMARK 3 T11: 0.3565 T22: 0.1769 REMARK 3 T33: 0.2650 T12: -0.0499 REMARK 3 T13: -0.0297 T23: 0.0310 REMARK 3 L TENSOR REMARK 3 L11: 2.2297 L22: 5.1676 REMARK 3 L33: 3.1983 L12: -3.1558 REMARK 3 L13: -1.6047 L23: 1.0973 REMARK 3 S TENSOR REMARK 3 S11: -0.3016 S12: -0.1284 S13: -0.0053 REMARK 3 S21: 0.4237 S22: 0.1390 S23: -0.0862 REMARK 3 S31: 0.3273 S32: 0.0634 S33: 0.1626 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 161 B 229 REMARK 3 ORIGIN FOR THE GROUP (A): -1.4980 -19.3530 -30.0120 REMARK 3 T TENSOR REMARK 3 T11: 0.3707 T22: 0.1233 REMARK 3 T33: 0.2569 T12: 0.0209 REMARK 3 T13: 0.0103 T23: -0.0298 REMARK 3 L TENSOR REMARK 3 L11: 2.6716 L22: 1.3066 REMARK 3 L33: 2.1806 L12: -0.0936 REMARK 3 L13: 1.1136 L23: -0.2093 REMARK 3 S TENSOR REMARK 3 S11: -0.0055 S12: -0.1766 S13: -0.1820 REMARK 3 S21: 0.1745 S22: 0.1267 S23: 0.0530 REMARK 3 S31: 0.0478 S32: 0.0655 S33: -0.1212 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 230 B 263 REMARK 3 ORIGIN FOR THE GROUP (A): -3.0530 -13.5250 -36.3610 REMARK 3 T TENSOR REMARK 3 T11: 0.3667 T22: 0.0809 REMARK 3 T33: 0.2834 T12: 0.0245 REMARK 3 T13: 0.0346 T23: -0.0429 REMARK 3 L TENSOR REMARK 3 L11: 2.2086 L22: 0.7997 REMARK 3 L33: 4.2032 L12: 0.5435 REMARK 3 L13: 1.1173 L23: 0.2802 REMARK 3 S TENSOR REMARK 3 S11: -0.0733 S12: -0.1016 S13: 0.0834 REMARK 3 S21: 0.0552 S22: 0.0309 S23: 0.1525 REMARK 3 S31: -0.0786 S32: -0.0503 S33: 0.0423 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 264 B 295 REMARK 3 ORIGIN FOR THE GROUP (A): 24.0190 -18.7500 -41.0530 REMARK 3 T TENSOR REMARK 3 T11: 0.3511 T22: 0.1885 REMARK 3 T33: 0.2225 T12: -0.0270 REMARK 3 T13: -0.0359 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 3.2819 L22: 3.2176 REMARK 3 L33: 1.7553 L12: -1.2764 REMARK 3 L13: -1.4868 L23: 1.6215 REMARK 3 S TENSOR REMARK 3 S11: -0.0312 S12: -0.3190 S13: 0.0925 REMARK 3 S21: -0.1876 S22: 0.0400 S23: -0.2508 REMARK 3 S31: -0.1071 S32: 0.3648 S33: -0.0088 REMARK 3 REMARK 3 TLS GROUP : 20 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 296 B 305 REMARK 3 ORIGIN FOR THE GROUP (A): 25.5790 -12.2480 -38.0350 REMARK 3 T TENSOR REMARK 3 T11: 0.4812 T22: 0.2516 REMARK 3 T33: 0.2207 T12: -0.0643 REMARK 3 T13: -0.0937 T23: -0.1594 REMARK 3 L TENSOR REMARK 3 L11: 8.2657 L22: 8.6853 REMARK 3 L33: 9.4700 L12: 0.1221 REMARK 3 L13: -6.7346 L23: -0.8961 REMARK 3 S TENSOR REMARK 3 S11: 0.1769 S12: -1.2255 S13: 0.6680 REMARK 3 S21: -0.3730 S22: 0.5721 S23: -0.6038 REMARK 3 S31: -0.0768 S32: 1.2046 S33: -0.7491 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : RESIDUAL ONLY REMARK 3 TWIN REFINEMENT PERFORMED WITH TWO DOMAINS, TWIN FRACTION 0.575 REMARK 4 REMARK 4 3K1N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1000055432. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-SEP-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00800 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17220 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.990 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.2 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : 0.07600 REMARK 200 FOR THE DATA SET : 15.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.30400 REMARK 200 R SYM FOR SHELL (I) : 0.30400 REMARK 200 FOR SHELL : 4.090 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2F97 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PRECIPITANT: 35% V/V ISO-PROPANOL, 0.1 REMARK 280 M TRIS HCL PH 8.5, 0.2 M AMMONIUM ACETATE. PROTEIN: 30 MM TRIS REMARK 280 BASE PH 9.0, 0.5 M NACL, 10% GLYCEROL, 250 MM IMIDAZOLE, 10 MM REMARK 280 BME, MICROBATCH UNDER OIL, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.93500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 93.93500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 58660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -95.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 140.48000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 93.93500 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 70.24000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 -70.10000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 93.93500 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 70.24000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 -70.10000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 56860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -105.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -70.10000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 70.24000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 -70.10000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 93.93500 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 70.24000 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -93.93500 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 70.24000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -70.10000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 93.93500 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 608 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 619 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TRP A 304 REMARK 465 LEU A 305 REMARK 465 GLU A 306 REMARK 465 HIS A 307 REMARK 465 HIS A 308 REMARK 465 HIS A 309 REMARK 465 HIS A 310 REMARK 465 HIS A 311 REMARK 465 HIS A 312 REMARK 465 GLU B 306 REMARK 465 HIS B 307 REMARK 465 HIS B 308 REMARK 465 HIS B 309 REMARK 465 HIS B 310 REMARK 465 HIS B 311 REMARK 465 HIS B 312 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 213 O HOH A 344 2.15 REMARK 500 O SER B 150 O HOH B 371 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA A 86 N - CA - C ANGL. DEV. = 19.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 50 89.61 -67.49 REMARK 500 ARG A 84 52.53 -117.19 REMARK 500 ILE A 85 -95.34 -78.67 REMARK 500 ALA A 86 -38.19 171.19 REMARK 500 SER A 87 26.18 149.66 REMARK 500 VAL A 88 -24.49 95.82 REMARK 500 GLU A 89 109.78 141.51 REMARK 500 ASP A 151 -116.11 -66.19 REMARK 500 ALA A 153 1.62 -68.45 REMARK 500 ASN A 175 -9.73 -58.61 REMARK 500 MET A 177 37.48 -86.84 REMARK 500 LYS A 180 -29.26 -145.52 REMARK 500 GLU A 226 -168.07 -160.50 REMARK 500 ALA A 236 11.26 -66.76 REMARK 500 MET A 276 48.25 -87.15 REMARK 500 ASP B 151 111.05 -175.84 REMARK 500 ARG B 160 137.04 -177.12 REMARK 500 ILE B 188 -29.97 -36.71 REMARK 500 ASN B 202 -160.23 -117.97 REMARK 500 GLN B 248 3.51 -67.54 REMARK 500 GLU B 278 15.61 -152.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 314 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD B 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 314 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2F6G RELATED DB: PDB REMARK 900 BENM EFFECTOR BINDING DOMAIN REMARK 900 RELATED ID: 2F97 RELATED DB: PDB REMARK 900 BENM EFFECTOR BINDING DOMAIN, HIGH PH REMARK 900 RELATED ID: 2H99 RELATED DB: PDB REMARK 900 BENM R156H MUTANT EFFECTOR BINDING DOMAIN REMARK 900 RELATED ID: 3GLB RELATED DB: PDB REMARK 900 CATM R156H MUTANT EFFECTOR BINDING DOMAIN REMARK 900 RELATED ID: 3K1M RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FULL-LENGTH BENM R156H MUTANT REMARK 900 RELATED ID: 3K1P RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FULL-LENGTH BENM E226K MUTANT DBREF 3K1N A 1 304 UNP O68014 BENM_ACIAD 1 304 DBREF 3K1N B 1 304 UNP O68014 BENM_ACIAD 1 304 SEQADV 3K1N LEU A 305 UNP O68014 EXPRESSION TAG SEQADV 3K1N GLU A 306 UNP O68014 EXPRESSION TAG SEQADV 3K1N HIS A 307 UNP O68014 EXPRESSION TAG SEQADV 3K1N HIS A 308 UNP O68014 EXPRESSION TAG SEQADV 3K1N HIS A 309 UNP O68014 EXPRESSION TAG SEQADV 3K1N HIS A 310 UNP O68014 EXPRESSION TAG SEQADV 3K1N HIS A 311 UNP O68014 EXPRESSION TAG SEQADV 3K1N HIS A 312 UNP O68014 EXPRESSION TAG SEQADV 3K1N LEU B 305 UNP O68014 EXPRESSION TAG SEQADV 3K1N GLU B 306 UNP O68014 EXPRESSION TAG SEQADV 3K1N HIS B 307 UNP O68014 EXPRESSION TAG SEQADV 3K1N HIS B 308 UNP O68014 EXPRESSION TAG SEQADV 3K1N HIS B 309 UNP O68014 EXPRESSION TAG SEQADV 3K1N HIS B 310 UNP O68014 EXPRESSION TAG SEQADV 3K1N HIS B 311 UNP O68014 EXPRESSION TAG SEQADV 3K1N HIS B 312 UNP O68014 EXPRESSION TAG SEQRES 1 A 312 MET GLU LEU ARG HIS LEU ARG TYR PHE VAL ALA VAL VAL SEQRES 2 A 312 GLU GLU GLN SER PHE THR LYS ALA ALA ASP LYS LEU CYS SEQRES 3 A 312 ILE ALA GLN PRO PRO LEU SER ARG GLN ILE GLN ASN LEU SEQRES 4 A 312 GLU GLU GLU LEU GLY ILE GLN LEU LEU GLU ARG GLY SER SEQRES 5 A 312 ARG PRO VAL LYS THR THR PRO GLU GLY HIS PHE PHE TYR SEQRES 6 A 312 GLN TYR ALA ILE LYS LEU LEU SER ASN VAL ASP GLN MET SEQRES 7 A 312 VAL SER MET THR LYS ARG ILE ALA SER VAL GLU LYS THR SEQRES 8 A 312 ILE ARG ILE GLY PHE VAL GLY SER LEU LEU PHE GLY LEU SEQRES 9 A 312 LEU PRO ARG ILE ILE HIS LEU TYR ARG GLN ALA HIS PRO SEQRES 10 A 312 ASN LEU ARG ILE GLU LEU TYR GLU MET GLY THR LYS ALA SEQRES 11 A 312 GLN THR GLU ALA LEU LYS GLU GLY ARG ILE ASP ALA GLY SEQRES 12 A 312 PHE GLY ARG LEU LYS ILE SER ASP PRO ALA ILE LYS ARG SEQRES 13 A 312 THR LEU LEU ARG ASN GLU ARG LEU MET VAL ALA VAL HIS SEQRES 14 A 312 ALA SER HIS PRO LEU ASN GLN MET LYS ASP LYS GLY VAL SEQRES 15 A 312 HIS LEU ASN ASP LEU ILE ASP GLU LYS ILE LEU LEU TYR SEQRES 16 A 312 PRO SER SER PRO LYS PRO ASN PHE SER THR HIS VAL MET SEQRES 17 A 312 ASN ILE PHE SER ASP HIS GLY LEU GLU PRO THR LYS ILE SEQRES 18 A 312 ASN GLU VAL ARG GLU VAL GLN LEU ALA LEU GLY LEU VAL SEQRES 19 A 312 ALA ALA GLY GLU GLY ILE SER LEU VAL PRO ALA SER THR SEQRES 20 A 312 GLN SER ILE GLN LEU PHE ASN LEU SER TYR VAL PRO LEU SEQRES 21 A 312 LEU ASP PRO ASP ALA ILE THR PRO ILE TYR ILE ALA VAL SEQRES 22 A 312 ARG ASN MET GLU GLU SER THR TYR ILE TYR SER LEU TYR SEQRES 23 A 312 GLU THR ILE ARG GLN ILE TYR ALA TYR GLU GLY PHE THR SEQRES 24 A 312 GLU PRO PRO ASN TRP LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 312 MET GLU LEU ARG HIS LEU ARG TYR PHE VAL ALA VAL VAL SEQRES 2 B 312 GLU GLU GLN SER PHE THR LYS ALA ALA ASP LYS LEU CYS SEQRES 3 B 312 ILE ALA GLN PRO PRO LEU SER ARG GLN ILE GLN ASN LEU SEQRES 4 B 312 GLU GLU GLU LEU GLY ILE GLN LEU LEU GLU ARG GLY SER SEQRES 5 B 312 ARG PRO VAL LYS THR THR PRO GLU GLY HIS PHE PHE TYR SEQRES 6 B 312 GLN TYR ALA ILE LYS LEU LEU SER ASN VAL ASP GLN MET SEQRES 7 B 312 VAL SER MET THR LYS ARG ILE ALA SER VAL GLU LYS THR SEQRES 8 B 312 ILE ARG ILE GLY PHE VAL GLY SER LEU LEU PHE GLY LEU SEQRES 9 B 312 LEU PRO ARG ILE ILE HIS LEU TYR ARG GLN ALA HIS PRO SEQRES 10 B 312 ASN LEU ARG ILE GLU LEU TYR GLU MET GLY THR LYS ALA SEQRES 11 B 312 GLN THR GLU ALA LEU LYS GLU GLY ARG ILE ASP ALA GLY SEQRES 12 B 312 PHE GLY ARG LEU LYS ILE SER ASP PRO ALA ILE LYS ARG SEQRES 13 B 312 THR LEU LEU ARG ASN GLU ARG LEU MET VAL ALA VAL HIS SEQRES 14 B 312 ALA SER HIS PRO LEU ASN GLN MET LYS ASP LYS GLY VAL SEQRES 15 B 312 HIS LEU ASN ASP LEU ILE ASP GLU LYS ILE LEU LEU TYR SEQRES 16 B 312 PRO SER SER PRO LYS PRO ASN PHE SER THR HIS VAL MET SEQRES 17 B 312 ASN ILE PHE SER ASP HIS GLY LEU GLU PRO THR LYS ILE SEQRES 18 B 312 ASN GLU VAL ARG GLU VAL GLN LEU ALA LEU GLY LEU VAL SEQRES 19 B 312 ALA ALA GLY GLU GLY ILE SER LEU VAL PRO ALA SER THR SEQRES 20 B 312 GLN SER ILE GLN LEU PHE ASN LEU SER TYR VAL PRO LEU SEQRES 21 B 312 LEU ASP PRO ASP ALA ILE THR PRO ILE TYR ILE ALA VAL SEQRES 22 B 312 ARG ASN MET GLU GLU SER THR TYR ILE TYR SER LEU TYR SEQRES 23 B 312 GLU THR ILE ARG GLN ILE TYR ALA TYR GLU GLY PHE THR SEQRES 24 B 312 GLU PRO PRO ASN TRP LEU GLU HIS HIS HIS HIS HIS HIS HET IMD A 313 5 HET CL A 314 1 HET IMD B 313 5 HET CL B 314 1 HETNAM IMD IMIDAZOLE HETNAM CL CHLORIDE ION FORMUL 3 IMD 2(C3 H5 N2 1+) FORMUL 4 CL 2(CL 1-) FORMUL 7 HOH *263(H2 O) HELIX 1 1 GLU A 2 GLU A 15 1 14 HELIX 2 2 SER A 17 CYS A 26 1 10 HELIX 3 3 ALA A 28 GLY A 44 1 17 HELIX 4 4 THR A 58 LYS A 83 1 26 HELIX 5 5 GLY A 98 GLY A 103 5 6 HELIX 6 6 LEU A 104 HIS A 116 1 13 HELIX 7 7 GLY A 127 GLU A 137 1 11 HELIX 8 8 HIS A 172 LYS A 180 5 9 HELIX 9 9 HIS A 183 ILE A 188 5 6 HELIX 10 10 ASN A 202 HIS A 214 1 13 HELIX 11 11 GLU A 226 ALA A 236 1 11 HELIX 12 12 SER A 246 ILE A 250 5 5 HELIX 13 13 SER A 279 GLU A 296 1 18 HELIX 14 14 GLU B 2 GLN B 16 1 15 HELIX 15 15 PHE B 18 ASP B 23 1 6 HELIX 16 16 ALA B 28 GLY B 44 1 17 HELIX 17 17 THR B 58 ALA B 86 1 29 HELIX 18 18 GLY B 98 GLY B 103 5 6 HELIX 19 19 LEU B 104 HIS B 116 1 13 HELIX 20 20 GLY B 127 GLU B 137 1 11 HELIX 21 21 HIS B 172 LYS B 178 5 7 HELIX 22 22 HIS B 183 LEU B 187 5 5 HELIX 23 23 ASN B 202 HIS B 214 1 13 HELIX 24 24 GLU B 226 ALA B 236 1 11 HELIX 25 25 SER B 246 ILE B 250 5 5 HELIX 26 26 SER B 279 GLY B 297 1 19 SHEET 1 A 6 ARG A 120 GLU A 125 0 SHEET 2 A 6 THR A 91 PHE A 96 1 N ILE A 94 O TYR A 124 SHEET 3 A 6 ALA A 142 GLY A 145 1 O PHE A 144 N GLY A 95 SHEET 4 A 6 ILE A 266 ARG A 274 -1 O TYR A 270 N GLY A 145 SHEET 5 A 6 ILE A 154 HIS A 169 -1 N GLU A 162 O THR A 267 SHEET 6 A 6 SER A 241 PRO A 244 -1 O SER A 241 N ALA A 167 SHEET 1 B 6 ARG A 120 GLU A 125 0 SHEET 2 B 6 THR A 91 PHE A 96 1 N ILE A 94 O TYR A 124 SHEET 3 B 6 ALA A 142 GLY A 145 1 O PHE A 144 N GLY A 95 SHEET 4 B 6 ILE A 266 ARG A 274 -1 O TYR A 270 N GLY A 145 SHEET 5 B 6 ILE A 154 HIS A 169 -1 N GLU A 162 O THR A 267 SHEET 6 B 6 LEU A 255 PRO A 259 -1 O VAL A 258 N VAL A 166 SHEET 1 C 2 ILE A 192 LEU A 194 0 SHEET 2 C 2 ILE A 221 GLU A 223 1 O ASN A 222 N LEU A 194 SHEET 1 D 2 LEU B 48 GLU B 49 0 SHEET 2 D 2 LYS B 56 THR B 57 -1 O LYS B 56 N GLU B 49 SHEET 1 E 8 ARG B 120 GLU B 125 0 SHEET 2 E 8 THR B 91 PHE B 96 1 N ILE B 94 O GLU B 122 SHEET 3 E 8 ALA B 142 GLY B 145 1 O ALA B 142 N GLY B 95 SHEET 4 E 8 ILE B 266 ARG B 274 -1 O TYR B 270 N GLY B 145 SHEET 5 E 8 ILE B 154 HIS B 169 -1 N GLU B 162 O THR B 267 SHEET 6 E 8 ILE B 240 PRO B 244 -1 O VAL B 243 N MET B 165 SHEET 7 E 8 ILE B 192 LEU B 194 1 N LEU B 193 O ILE B 240 SHEET 8 E 8 ILE B 221 GLU B 223 1 O ASN B 222 N ILE B 192 SHEET 1 F 6 ARG B 120 GLU B 125 0 SHEET 2 F 6 THR B 91 PHE B 96 1 N ILE B 94 O GLU B 122 SHEET 3 F 6 ALA B 142 GLY B 145 1 O ALA B 142 N GLY B 95 SHEET 4 F 6 ILE B 266 ARG B 274 -1 O TYR B 270 N GLY B 145 SHEET 5 F 6 ILE B 154 HIS B 169 -1 N GLU B 162 O THR B 267 SHEET 6 F 6 LEU B 255 PRO B 259 -1 O SER B 256 N VAL B 168 CISPEP 1 PRO A 54 VAL A 55 0 -1.20 CISPEP 2 ASP A 151 PRO A 152 0 -10.91 CISPEP 3 TYR A 195 PRO A 196 0 -4.07 CISPEP 4 LYS A 200 PRO A 201 0 7.47 CISPEP 5 ARG B 53 PRO B 54 0 -8.22 CISPEP 6 TYR B 195 PRO B 196 0 -14.13 CISPEP 7 LYS B 200 PRO B 201 0 4.83 SITE 1 AC1 2 TYR A 293 CL A 314 SITE 1 AC2 2 ARG A 160 IMD A 313 SITE 1 AC3 5 LEU B 105 ILE B 108 LEU B 159 TYR B 293 SITE 2 AC3 5 CL B 314 SITE 1 AC4 5 GLY B 103 LEU B 104 ARG B 160 ILE B 269 SITE 2 AC4 5 IMD B 313 CRYST1 70.240 70.100 187.870 90.00 90.00 90.00 P 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014237 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014265 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005323 0.00000