HEADER HORMONE 29-SEP-09 3K1X TITLE ACIDIC FIBROBLAST GROWTH FACTOR (FGF-1) COMPLEXED WITH DOBESILATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEPARIN-BINDING GROWTH FACTOR 1; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 FRAGMENT: HEPARIN-BINDING, UNP RESIDUES 24-153; COMPND 5 SYNONYM: HBGF-1, ACIDIC FIBROBLAST GROWTH FACTOR, AFGF, BETA- COMPND 6 ENDOTHELIAL CELL GROWTH FACTOR, ECGF-BETA; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PRAT KEYWDS ACIDIC FIBROBLAST GROWTH FACTOR, INHIBITORS, ACETYLATION, HORMONE EXPDTA X-RAY DIFFRACTION AUTHOR A.ROMERO,I.S.FERNANDEZ,G.GIMENEZ-GALLEGO REVDAT 3 01-NOV-23 3K1X 1 REMARK REVDAT 2 12-MAY-10 3K1X 1 JRNL REVDAT 1 02-FEB-10 3K1X 0 JRNL AUTH I.S.FERNANDEZ,P.CUEVAS,J.ANGULO,P.LOPEZ-NAVAJAS, JRNL AUTH 2 A.CANALES-MAYORDOMO,R.GONZALEZ-CORROCHANO,R.M.LOZANO, JRNL AUTH 3 S.VALVERDE,J.JIMENEZ-BARBERO,A.ROMERO,G.GIMENEZ-GALLEGO JRNL TITL GENTISIC ACID, A COMPOUND ASSOCIATED WITH PLANT DEFENSE AND JRNL TITL 2 A METABOLITE OF ASPIRIN, HEADS A NEW CLASS OF IN VIVO JRNL TITL 3 FIBROBLAST GROWTH FACTOR INHIBITORS. JRNL REF J.BIOL.CHEM. V. 285 11714 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20145243 JRNL DOI 10.1074/JBC.M109.064618 REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.48 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 56030 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2981 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.98 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3566 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.2990 REMARK 3 BIN FREE R VALUE SET COUNT : 204 REMARK 3 BIN FREE R VALUE : 0.4090 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6228 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 154 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.73000 REMARK 3 B22 (A**2) : 1.01000 REMARK 3 B33 (A**2) : -1.39000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.61000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.211 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.198 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.162 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.774 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6390 ; 0.026 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8622 ; 2.273 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 774 ; 8.245 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 300 ;36.353 ;24.200 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1146 ;18.798 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;19.250 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 914 ; 0.161 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4854 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2576 ; 0.232 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4111 ; 0.317 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 348 ; 0.187 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 83 ; 0.265 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.154 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3999 ; 1.669 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6210 ; 2.713 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2753 ; 3.596 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2412 ; 5.070 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3K1X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000055442. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM16 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59016 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 94.070 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.34200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1AXM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS OF THECOMPLEX BETWEEN FGF-1 REMARK 280 AND 2,5-DHPS (2,5-DIHYDROXYPHENYLSULFONATE) WERE GROWN USING THE REMARK 280 SITTING DROP VAPOUR METHOD AT 295 K. EQUAL VOLUMES OF PROTEIN REMARK 280 AND INHIBITOR SOLUTIONS, 0.75 AND 1.5MM, RESPECTIVELY WERE MIXED REMARK 280 WITH DROPS CONTAINING 60% SODIUM/POTASSIUM TARTRATE BUFFERED REMARK 280 WITH 5MM SODIUM PHOSPHATE [PH 7.8]. THE DROPS WERE EQUILIBRATED REMARK 280 AGAINST 0.2ML OF 1.3M LI2SO4 AND TYPICAL CRYSTALS GREW WITHIN REMARK 280 TWO WEEKS WITH APPROXIMATE DIMENSIONS OF 0.7 X 0.5 X 0.2 MM. , REMARK 280 VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 45 NZ LYS A 92 1.97 REMARK 500 OE2 GLU D 74 O HOH D 137 2.11 REMARK 500 OD1 ASN E 106 OG SER E 108 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 7 CG TYR A 7 CD2 0.081 REMARK 500 CYS C 8 CB CYS C 8 SG -0.132 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 27 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 29 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG B 27 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 LEU B 127 CA - CB - CG ANGL. DEV. = 14.1 DEGREES REMARK 500 MET C 59 CG - SD - CE ANGL. DEV. = -9.7 DEGREES REMARK 500 ILE D 90 CG1 - CB - CG2 ANGL. DEV. = -13.6 DEGREES REMARK 500 VAL E 129 N - CA - C ANGL. DEV. = -18.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 2 159.79 137.49 REMARK 500 ASP A 24 -157.93 -149.10 REMARK 500 SER A 42 -166.56 -112.62 REMARK 500 VAL A 43 -70.39 -53.77 REMARK 500 PRO A 71 84.03 -66.61 REMARK 500 ASN A 72 -164.42 -79.13 REMARK 500 GLU A 82 -167.71 -123.75 REMARK 500 HIS A 85 -13.18 81.24 REMARK 500 LYS A 93 -16.49 -46.47 REMARK 500 HIS A 94 38.87 -141.34 REMARK 500 HIS A 116 145.52 -174.49 REMARK 500 ASP B 24 -157.75 -150.26 REMARK 500 ASN B 84 32.53 72.22 REMARK 500 HIS B 85 -2.73 79.02 REMARK 500 PRO C 3 163.74 -49.23 REMARK 500 GLU C 41 -86.36 -70.69 REMARK 500 GLU C 83 34.17 -54.09 REMARK 500 HIS C 85 -4.72 84.44 REMARK 500 TYR C 117 128.49 -37.35 REMARK 500 LYS D 2 164.14 -34.34 REMARK 500 ASN D 10 -71.71 -56.84 REMARK 500 GLU D 41 -110.83 -58.47 REMARK 500 GLU D 83 -8.14 -53.70 REMARK 500 HIS D 85 -7.66 81.15 REMARK 500 ASP E 31 128.20 -38.34 REMARK 500 GLU E 41 -107.14 -61.19 REMARK 500 PRO E 71 81.78 -56.54 REMARK 500 LYS E 93 -59.55 -29.37 REMARK 500 ASN E 98 61.68 60.97 REMARK 500 ASN F 10 92.61 -61.32 REMARK 500 SER F 42 157.67 139.59 REMARK 500 LYS F 104 166.69 -48.09 REMARK 500 VAL F 129 -155.54 -127.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN D 84 HIS D 85 -148.77 REMARK 500 PRO E 128 VAL E 129 140.68 REMARK 500 GLU F 41 SER F 42 -143.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DBX A 131 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DBX B 131 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3JUT RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH GENTISIC ACID DBREF 3K1X A 1 130 UNP P05230 FGF1_HUMAN 24 153 DBREF 3K1X B 1 130 UNP P05230 FGF1_HUMAN 24 153 DBREF 3K1X C 1 130 UNP P05230 FGF1_HUMAN 24 153 DBREF 3K1X D 1 130 UNP P05230 FGF1_HUMAN 24 153 DBREF 3K1X E 1 130 UNP P05230 FGF1_HUMAN 24 153 DBREF 3K1X F 1 130 UNP P05230 FGF1_HUMAN 24 153 SEQRES 1 A 130 LYS LYS PRO LYS LEU LEU TYR CYS SER ASN GLY GLY HIS SEQRES 2 A 130 PHE LEU ARG ILE LEU PRO ASP GLY THR VAL ASP GLY THR SEQRES 3 A 130 ARG ASP ARG SER ASP GLN HIS ILE GLN LEU GLN LEU SER SEQRES 4 A 130 ALA GLU SER VAL GLY GLU VAL TYR ILE LYS SER THR GLU SEQRES 5 A 130 THR GLY GLN TYR LEU ALA MET ASP THR ASP GLY LEU LEU SEQRES 6 A 130 TYR GLY SER GLN THR PRO ASN GLU GLU CYS LEU PHE LEU SEQRES 7 A 130 GLU ARG LEU GLU GLU ASN HIS TYR ASN THR TYR ILE SER SEQRES 8 A 130 LYS LYS HIS ALA GLU LYS ASN TRP PHE VAL GLY LEU LYS SEQRES 9 A 130 LYS ASN GLY SER CYS LYS ARG GLY PRO ARG THR HIS TYR SEQRES 10 A 130 GLY GLN LYS ALA ILE LEU PHE LEU PRO LEU PRO VAL SER SEQRES 1 B 130 LYS LYS PRO LYS LEU LEU TYR CYS SER ASN GLY GLY HIS SEQRES 2 B 130 PHE LEU ARG ILE LEU PRO ASP GLY THR VAL ASP GLY THR SEQRES 3 B 130 ARG ASP ARG SER ASP GLN HIS ILE GLN LEU GLN LEU SER SEQRES 4 B 130 ALA GLU SER VAL GLY GLU VAL TYR ILE LYS SER THR GLU SEQRES 5 B 130 THR GLY GLN TYR LEU ALA MET ASP THR ASP GLY LEU LEU SEQRES 6 B 130 TYR GLY SER GLN THR PRO ASN GLU GLU CYS LEU PHE LEU SEQRES 7 B 130 GLU ARG LEU GLU GLU ASN HIS TYR ASN THR TYR ILE SER SEQRES 8 B 130 LYS LYS HIS ALA GLU LYS ASN TRP PHE VAL GLY LEU LYS SEQRES 9 B 130 LYS ASN GLY SER CYS LYS ARG GLY PRO ARG THR HIS TYR SEQRES 10 B 130 GLY GLN LYS ALA ILE LEU PHE LEU PRO LEU PRO VAL SER SEQRES 1 C 130 LYS LYS PRO LYS LEU LEU TYR CYS SER ASN GLY GLY HIS SEQRES 2 C 130 PHE LEU ARG ILE LEU PRO ASP GLY THR VAL ASP GLY THR SEQRES 3 C 130 ARG ASP ARG SER ASP GLN HIS ILE GLN LEU GLN LEU SER SEQRES 4 C 130 ALA GLU SER VAL GLY GLU VAL TYR ILE LYS SER THR GLU SEQRES 5 C 130 THR GLY GLN TYR LEU ALA MET ASP THR ASP GLY LEU LEU SEQRES 6 C 130 TYR GLY SER GLN THR PRO ASN GLU GLU CYS LEU PHE LEU SEQRES 7 C 130 GLU ARG LEU GLU GLU ASN HIS TYR ASN THR TYR ILE SER SEQRES 8 C 130 LYS LYS HIS ALA GLU LYS ASN TRP PHE VAL GLY LEU LYS SEQRES 9 C 130 LYS ASN GLY SER CYS LYS ARG GLY PRO ARG THR HIS TYR SEQRES 10 C 130 GLY GLN LYS ALA ILE LEU PHE LEU PRO LEU PRO VAL SER SEQRES 1 D 130 LYS LYS PRO LYS LEU LEU TYR CYS SER ASN GLY GLY HIS SEQRES 2 D 130 PHE LEU ARG ILE LEU PRO ASP GLY THR VAL ASP GLY THR SEQRES 3 D 130 ARG ASP ARG SER ASP GLN HIS ILE GLN LEU GLN LEU SER SEQRES 4 D 130 ALA GLU SER VAL GLY GLU VAL TYR ILE LYS SER THR GLU SEQRES 5 D 130 THR GLY GLN TYR LEU ALA MET ASP THR ASP GLY LEU LEU SEQRES 6 D 130 TYR GLY SER GLN THR PRO ASN GLU GLU CYS LEU PHE LEU SEQRES 7 D 130 GLU ARG LEU GLU GLU ASN HIS TYR ASN THR TYR ILE SER SEQRES 8 D 130 LYS LYS HIS ALA GLU LYS ASN TRP PHE VAL GLY LEU LYS SEQRES 9 D 130 LYS ASN GLY SER CYS LYS ARG GLY PRO ARG THR HIS TYR SEQRES 10 D 130 GLY GLN LYS ALA ILE LEU PHE LEU PRO LEU PRO VAL SER SEQRES 1 E 130 LYS LYS PRO LYS LEU LEU TYR CYS SER ASN GLY GLY HIS SEQRES 2 E 130 PHE LEU ARG ILE LEU PRO ASP GLY THR VAL ASP GLY THR SEQRES 3 E 130 ARG ASP ARG SER ASP GLN HIS ILE GLN LEU GLN LEU SER SEQRES 4 E 130 ALA GLU SER VAL GLY GLU VAL TYR ILE LYS SER THR GLU SEQRES 5 E 130 THR GLY GLN TYR LEU ALA MET ASP THR ASP GLY LEU LEU SEQRES 6 E 130 TYR GLY SER GLN THR PRO ASN GLU GLU CYS LEU PHE LEU SEQRES 7 E 130 GLU ARG LEU GLU GLU ASN HIS TYR ASN THR TYR ILE SER SEQRES 8 E 130 LYS LYS HIS ALA GLU LYS ASN TRP PHE VAL GLY LEU LYS SEQRES 9 E 130 LYS ASN GLY SER CYS LYS ARG GLY PRO ARG THR HIS TYR SEQRES 10 E 130 GLY GLN LYS ALA ILE LEU PHE LEU PRO LEU PRO VAL SER SEQRES 1 F 130 LYS LYS PRO LYS LEU LEU TYR CYS SER ASN GLY GLY HIS SEQRES 2 F 130 PHE LEU ARG ILE LEU PRO ASP GLY THR VAL ASP GLY THR SEQRES 3 F 130 ARG ASP ARG SER ASP GLN HIS ILE GLN LEU GLN LEU SER SEQRES 4 F 130 ALA GLU SER VAL GLY GLU VAL TYR ILE LYS SER THR GLU SEQRES 5 F 130 THR GLY GLN TYR LEU ALA MET ASP THR ASP GLY LEU LEU SEQRES 6 F 130 TYR GLY SER GLN THR PRO ASN GLU GLU CYS LEU PHE LEU SEQRES 7 F 130 GLU ARG LEU GLU GLU ASN HIS TYR ASN THR TYR ILE SER SEQRES 8 F 130 LYS LYS HIS ALA GLU LYS ASN TRP PHE VAL GLY LEU LYS SEQRES 9 F 130 LYS ASN GLY SER CYS LYS ARG GLY PRO ARG THR HIS TYR SEQRES 10 F 130 GLY GLN LYS ALA ILE LEU PHE LEU PRO LEU PRO VAL SER HET DBX A 131 12 HET DBX B 131 12 HETNAM DBX 2,5-DIHYDROXYBENZENESULFONIC ACID FORMUL 7 DBX 2(C6 H6 O5 S) FORMUL 9 HOH *154(H2 O) HELIX 1 1 ASP A 31 ILE A 34 5 4 HELIX 2 2 ASN A 72 CYS A 75 5 4 HELIX 3 3 HIS A 94 ASN A 98 5 5 HELIX 4 4 ARG A 111 THR A 115 5 5 HELIX 5 5 GLN A 119 ILE A 122 5 4 HELIX 6 6 ASN B 72 CYS B 75 5 4 HELIX 7 7 GLU B 83 HIS B 85 5 3 HELIX 8 8 HIS B 94 ASN B 98 5 5 HELIX 9 9 ARG B 111 THR B 115 5 5 HELIX 10 10 GLN B 119 ILE B 122 5 4 HELIX 11 11 ASN C 72 CYS C 75 5 4 HELIX 12 12 HIS C 94 ASN C 98 5 5 HELIX 13 13 ARG C 111 THR C 115 5 5 HELIX 14 14 GLN C 119 ILE C 122 5 4 HELIX 15 15 HIS D 94 ASN D 98 5 5 HELIX 16 16 ARG D 111 THR D 115 5 5 HELIX 17 17 GLN D 119 ILE D 122 5 4 HELIX 18 18 ASN E 72 CYS E 75 5 4 HELIX 19 19 HIS E 94 ASN E 98 5 5 HELIX 20 20 ARG E 111 THR E 115 5 5 HELIX 21 21 GLN E 119 ILE E 122 5 4 HELIX 22 22 ASN F 72 GLU F 74 5 3 HELIX 23 23 HIS F 94 ASN F 98 5 5 HELIX 24 24 ARG F 111 THR F 115 5 5 HELIX 25 25 GLN F 119 ILE F 122 5 4 SHEET 1 A 9 VAL A 23 THR A 26 0 SHEET 2 A 9 HIS A 13 ILE A 17 -1 N ARG A 16 O ASP A 24 SHEET 3 A 9 PRO A 3 CYS A 8 -1 N CYS A 8 O HIS A 13 SHEET 4 A 9 PHE A 124 PRO A 128 -1 O LEU A 125 N TYR A 7 SHEET 5 A 9 ASN A 87 SER A 91 -1 N ASN A 87 O PHE A 124 SHEET 6 A 9 PHE A 77 LEU A 81 -1 N LEU A 78 O ILE A 90 SHEET 7 A 9 GLU A 45 SER A 50 -1 N VAL A 46 O PHE A 77 SHEET 8 A 9 LEU A 36 SER A 39 -1 N GLN A 37 O LYS A 49 SHEET 9 A 9 PRO A 3 CYS A 8 -1 N LYS A 4 O LEU A 36 SHEET 1 B 2 TYR A 56 MET A 59 0 SHEET 2 B 2 LEU A 65 SER A 68 -1 O SER A 68 N TYR A 56 SHEET 1 C 4 VAL B 23 THR B 26 0 SHEET 2 C 4 HIS B 13 ILE B 17 -1 N PHE B 14 O THR B 26 SHEET 3 C 4 LYS B 4 CYS B 8 -1 N CYS B 8 O HIS B 13 SHEET 4 C 4 PHE B 124 PRO B 128 -1 O LEU B 125 N TYR B 7 SHEET 1 D 4 LEU B 36 SER B 42 0 SHEET 2 D 4 GLU B 45 SER B 50 -1 O LYS B 49 N GLN B 37 SHEET 3 D 4 PHE B 77 LEU B 81 -1 O PHE B 77 N VAL B 46 SHEET 4 D 4 ASN B 87 SER B 91 -1 O ILE B 90 N LEU B 78 SHEET 1 E 2 TYR B 56 MET B 59 0 SHEET 2 E 2 LEU B 65 SER B 68 -1 O SER B 68 N TYR B 56 SHEET 1 F 4 VAL C 23 THR C 26 0 SHEET 2 F 4 HIS C 13 ILE C 17 -1 N ARG C 16 O ASP C 24 SHEET 3 F 4 LYS C 4 CYS C 8 -1 N CYS C 8 O HIS C 13 SHEET 4 F 4 PHE C 124 PRO C 128 -1 O LEU C 125 N TYR C 7 SHEET 1 G 4 LEU C 36 ALA C 40 0 SHEET 2 G 4 GLU C 45 SER C 50 -1 O LYS C 49 N GLN C 37 SHEET 3 G 4 PHE C 77 LEU C 81 -1 O PHE C 77 N VAL C 46 SHEET 4 G 4 ASN C 87 SER C 91 -1 O ILE C 90 N LEU C 78 SHEET 1 H 2 TYR C 56 MET C 59 0 SHEET 2 H 2 LEU C 65 SER C 68 -1 O SER C 68 N TYR C 56 SHEET 1 I 4 VAL D 23 THR D 26 0 SHEET 2 I 4 HIS D 13 ILE D 17 -1 N PHE D 14 O THR D 26 SHEET 3 I 4 LYS D 4 CYS D 8 -1 N CYS D 8 O HIS D 13 SHEET 4 I 4 PHE D 124 PRO D 128 -1 O LEU D 125 N TYR D 7 SHEET 1 J 4 LEU D 36 ALA D 40 0 SHEET 2 J 4 GLU D 45 SER D 50 -1 O LYS D 49 N GLN D 37 SHEET 3 J 4 PHE D 77 LEU D 81 -1 O PHE D 77 N VAL D 46 SHEET 4 J 4 ASN D 87 SER D 91 -1 O ILE D 90 N LEU D 78 SHEET 1 K 2 TYR D 56 MET D 59 0 SHEET 2 K 2 LEU D 65 SER D 68 -1 O SER D 68 N TYR D 56 SHEET 1 L 4 VAL E 23 THR E 26 0 SHEET 2 L 4 HIS E 13 ILE E 17 -1 N ARG E 16 O ASP E 24 SHEET 3 L 4 LYS E 4 CYS E 8 -1 N CYS E 8 O HIS E 13 SHEET 4 L 4 PHE E 124 PRO E 128 -1 O LEU E 125 N TYR E 7 SHEET 1 M 4 LEU E 36 SER E 39 0 SHEET 2 M 4 GLU E 45 SER E 50 -1 O TYR E 47 N SER E 39 SHEET 3 M 4 PHE E 77 LEU E 81 -1 O PHE E 77 N VAL E 46 SHEET 4 M 4 ASN E 87 SER E 91 -1 O ILE E 90 N LEU E 78 SHEET 1 N 2 TYR E 56 MET E 59 0 SHEET 2 N 2 LEU E 65 SER E 68 -1 O SER E 68 N TYR E 56 SHEET 1 O 4 VAL F 23 THR F 26 0 SHEET 2 O 4 HIS F 13 ILE F 17 -1 N PHE F 14 O THR F 26 SHEET 3 O 4 LYS F 4 CYS F 8 -1 N CYS F 8 O HIS F 13 SHEET 4 O 4 PHE F 124 PRO F 128 -1 O LEU F 125 N TYR F 7 SHEET 1 P 4 LEU F 36 ALA F 40 0 SHEET 2 P 4 GLU F 45 SER F 50 -1 O LYS F 49 N GLN F 37 SHEET 3 P 4 LEU F 76 LEU F 81 -1 O PHE F 77 N VAL F 46 SHEET 4 P 4 ASN F 87 SER F 91 -1 O ILE F 90 N LEU F 78 SHEET 1 Q 2 TYR F 56 MET F 59 0 SHEET 2 Q 2 LEU F 65 SER F 68 -1 O SER F 68 N TYR F 56 SITE 1 AC1 8 ASN A 10 LYS A 110 GLN A 119 LYS A 120 SITE 2 AC1 8 ALA A 121 HOH A 145 HOH A 149 THR C 61 SITE 1 AC2 6 ASN B 10 LYS B 105 LYS B 110 GLN B 119 SITE 2 AC2 6 LYS B 120 ALA B 121 CRYST1 97.022 47.349 97.975 90.00 106.64 90.00 P 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010307 0.000000 0.003080 0.00000 SCALE2 0.000000 0.021120 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010653 0.00000