HEADER HYDROLASE 29-SEP-09 3K1Z TITLE CRYSTAL STRUCTURE OF HUMAN HALOACID DEHALOGENASE-LIKE HYDROLASE DOMAIN TITLE 2 CONTAINING 3 (HDHD3) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HALOACID DEHALOGENASE-LIKE HYDROLASE DOMAIN-CONTAINING COMPND 3 PROTEIN 3; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 GENE: HDHD3; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-R3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PNIC-CTHF KEYWDS HDHD3, HALOACID DEHALOGENASE-LIKE HYDROLASE DOMAIN CONTAINING 3, KEYWDS 2 STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR E.UGOCHUKWU,K.GUO,W.W.YUE,E.PILKA,S.PICAUD,J.MUNIZ,A.C.W.PIKE, AUTHOR 2 T.KROJER,M.GOMES,F.VON DELFT,C.BOUNTRA,C.H.ARROWSMITH,J.WEIGELT, AUTHOR 3 A.EDWARDS,K.KAVANAGH,U.OPPERMANN,STRUCTURAL GENOMICS CONSORTIUM AUTHOR 4 (SGC) REVDAT 3 01-NOV-17 3K1Z 1 REMARK REVDAT 2 13-JUL-11 3K1Z 1 VERSN REVDAT 1 03-NOV-09 3K1Z 0 JRNL AUTH E.UGOCHUKWU,K.GUO,W.W.YUE,E.PILKA,K.KAVANAGH,U.OPPERMANN JRNL TITL CRYSTAL STRUCTURE OF HUMAN HALOACID DEHALOGENASE-LIKE JRNL TITL 2 HYDROLASE DOMAIN CONTAINING 3 (HDHD3) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0089 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 35966 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1892 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2596 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.2970 REMARK 3 BIN FREE R VALUE SET COUNT : 130 REMARK 3 BIN FREE R VALUE : 0.3420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1895 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 303 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.44000 REMARK 3 B22 (A**2) : 0.06000 REMARK 3 B33 (A**2) : 0.38000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.076 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.082 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.057 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.575 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1997 ; 0.013 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1368 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2727 ; 1.443 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3310 ; 0.943 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 252 ; 5.786 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 96 ;29.749 ;22.500 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 315 ;11.842 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;21.337 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 297 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2260 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 431 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1225 ; 2.876 ; 5.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 491 ; 1.148 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1969 ; 3.873 ; 7.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 772 ; 5.830 ; 9.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 751 ; 8.284 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 31 REMARK 3 ORIGIN FOR THE GROUP (A): -19.2537 -1.7976 10.8678 REMARK 3 T TENSOR REMARK 3 T11: 0.1255 T22: 0.1465 REMARK 3 T33: 0.0745 T12: -0.0029 REMARK 3 T13: 0.0231 T23: -0.0319 REMARK 3 L TENSOR REMARK 3 L11: 9.6089 L22: 4.7648 REMARK 3 L33: 0.5791 L12: 6.3437 REMARK 3 L13: 1.2464 L23: 0.9488 REMARK 3 S TENSOR REMARK 3 S11: 0.2628 S12: -0.7251 S13: 0.6162 REMARK 3 S21: 0.1865 S22: -0.3668 S23: 0.4081 REMARK 3 S31: -0.0107 S32: -0.2150 S33: 0.1040 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 32 A 81 REMARK 3 ORIGIN FOR THE GROUP (A): -17.2882 -18.4915 12.0305 REMARK 3 T TENSOR REMARK 3 T11: 0.0713 T22: 0.0720 REMARK 3 T33: 0.0383 T12: -0.0322 REMARK 3 T13: -0.0123 T23: 0.0230 REMARK 3 L TENSOR REMARK 3 L11: 8.5691 L22: 0.6790 REMARK 3 L33: 2.4815 L12: 0.2753 REMARK 3 L13: -1.6500 L23: -0.5121 REMARK 3 S TENSOR REMARK 3 S11: 0.0358 S12: -0.4918 S13: -0.3176 REMARK 3 S21: 0.0738 S22: -0.0074 S23: 0.0697 REMARK 3 S31: 0.1715 S32: -0.1938 S33: -0.0284 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 82 A 129 REMARK 3 ORIGIN FOR THE GROUP (A): -16.3299 -0.0473 5.3911 REMARK 3 T TENSOR REMARK 3 T11: 0.0660 T22: 0.0566 REMARK 3 T33: 0.0521 T12: 0.0267 REMARK 3 T13: -0.0124 T23: -0.0145 REMARK 3 L TENSOR REMARK 3 L11: 3.9096 L22: 3.8195 REMARK 3 L33: 1.3380 L12: 3.0519 REMARK 3 L13: 1.0169 L23: 0.7719 REMARK 3 S TENSOR REMARK 3 S11: -0.0697 S12: -0.0679 S13: 0.4304 REMARK 3 S21: -0.2025 S22: -0.0737 S23: 0.3919 REMARK 3 S31: -0.1723 S32: -0.1412 S33: 0.1434 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 130 A 157 REMARK 3 ORIGIN FOR THE GROUP (A): -8.9571 -0.8778 2.5155 REMARK 3 T TENSOR REMARK 3 T11: 0.0857 T22: 0.0449 REMARK 3 T33: 0.0135 T12: -0.0079 REMARK 3 T13: -0.0085 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 3.4014 L22: 3.2832 REMARK 3 L33: 0.8052 L12: -0.3786 REMARK 3 L13: 0.8673 L23: 0.4093 REMARK 3 S TENSOR REMARK 3 S11: 0.0011 S12: 0.2966 S13: 0.1193 REMARK 3 S21: -0.4542 S22: -0.0791 S23: 0.0741 REMARK 3 S31: -0.1342 S32: 0.0618 S33: 0.0780 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 158 A 182 REMARK 3 ORIGIN FOR THE GROUP (A): 5.4650 -1.8506 9.5425 REMARK 3 T TENSOR REMARK 3 T11: 0.0273 T22: 0.1017 REMARK 3 T33: 0.0915 T12: 0.0002 REMARK 3 T13: 0.0054 T23: -0.0143 REMARK 3 L TENSOR REMARK 3 L11: 3.9069 L22: 7.8998 REMARK 3 L33: 3.0458 L12: 2.2666 REMARK 3 L13: 0.4072 L23: 1.4831 REMARK 3 S TENSOR REMARK 3 S11: 0.0034 S12: 0.0898 S13: -0.1544 REMARK 3 S21: -0.1605 S22: 0.0779 S23: -0.7517 REMARK 3 S31: -0.1079 S32: 0.4822 S33: -0.0813 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 183 A 247 REMARK 3 ORIGIN FOR THE GROUP (A): -3.3501 7.2998 22.9046 REMARK 3 T TENSOR REMARK 3 T11: 0.0323 T22: 0.0437 REMARK 3 T33: 0.0297 T12: -0.0002 REMARK 3 T13: 0.0047 T23: -0.0241 REMARK 3 L TENSOR REMARK 3 L11: 2.5345 L22: 2.9493 REMARK 3 L33: 3.9994 L12: -0.4243 REMARK 3 L13: 0.2268 L23: 1.3578 REMARK 3 S TENSOR REMARK 3 S11: -0.0365 S12: -0.2429 S13: 0.1349 REMARK 3 S21: 0.1453 S22: 0.0665 S23: 0.0854 REMARK 3 S31: -0.0816 S32: -0.0796 S33: -0.0300 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3K1Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000055444. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-SEP-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9773, 0.9796 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37908 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 43.320 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : 0.06000 REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.55200 REMARK 200 R SYM FOR SHELL (I) : 0.55200 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXCD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.49M NAH2PO4, 0.91M K2HPO4, PH 7.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.81250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.83250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.22750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.83250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.81250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.22750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 248 REMARK 465 GLU A 249 REMARK 465 ASN A 250 REMARK 465 LEU A 251 REMARK 465 TYR A 252 REMARK 465 PHE A 253 REMARK 465 GLN A 254 REMARK 465 SER A 255 REMARK 465 HIS A 256 REMARK 465 HIS A 257 REMARK 465 HIS A 258 REMARK 465 HIS A 259 REMARK 465 HIS A 260 REMARK 465 HIS A 261 REMARK 465 ASP A 262 REMARK 465 TYR A 263 REMARK 465 LYS A 264 REMARK 465 ASP A 265 REMARK 465 ASP A 266 REMARK 465 ASP A 267 REMARK 465 ASP A 268 REMARK 465 LYS A 269 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 15 NZ REMARK 470 GLN A 215 CG CD OE1 NE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 51 CA CB CG CD OE1 NE2 REMARK 480 ARG A 122 CA CB CG CD NE CZ NH1 REMARK 480 ARG A 122 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 506 O HOH A 568 1.72 REMARK 500 O HOH A 523 O HOH A 524 2.02 REMARK 500 NH1 ARG A 72 OE1 GLU A 99 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 409 O HOH A 533 3545 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE A 137 CB PHE A 137 CG -0.112 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 137 N - CA - CB ANGL. DEV. = -11.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 16 17.32 42.20 REMARK 500 TYR A 198 -60.64 -98.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3HLT RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCTURE OF HUMAN HALOACID DEHALOGENASE-LIKE HYDROLASE REMARK 900 DOMAIN CONTAINING 2 (HDHD2) REMARK 900 RELATED ID: 2W4M RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCTURE OF HUMAN N-ACETYLNEURAMINIC ACID PHOSPHATASE, REMARK 900 NANP DBREF 3K1Z A 8 247 UNP Q9BSH5 HDHD3_HUMAN 7 246 SEQADV 3K1Z MSE A 7 UNP Q9BSH5 EXPRESSION TAG SEQADV 3K1Z ALA A 248 UNP Q9BSH5 EXPRESSION TAG SEQADV 3K1Z GLU A 249 UNP Q9BSH5 EXPRESSION TAG SEQADV 3K1Z ASN A 250 UNP Q9BSH5 EXPRESSION TAG SEQADV 3K1Z LEU A 251 UNP Q9BSH5 EXPRESSION TAG SEQADV 3K1Z TYR A 252 UNP Q9BSH5 EXPRESSION TAG SEQADV 3K1Z PHE A 253 UNP Q9BSH5 EXPRESSION TAG SEQADV 3K1Z GLN A 254 UNP Q9BSH5 EXPRESSION TAG SEQADV 3K1Z SER A 255 UNP Q9BSH5 EXPRESSION TAG SEQADV 3K1Z HIS A 256 UNP Q9BSH5 EXPRESSION TAG SEQADV 3K1Z HIS A 257 UNP Q9BSH5 EXPRESSION TAG SEQADV 3K1Z HIS A 258 UNP Q9BSH5 EXPRESSION TAG SEQADV 3K1Z HIS A 259 UNP Q9BSH5 EXPRESSION TAG SEQADV 3K1Z HIS A 260 UNP Q9BSH5 EXPRESSION TAG SEQADV 3K1Z HIS A 261 UNP Q9BSH5 EXPRESSION TAG SEQADV 3K1Z ASP A 262 UNP Q9BSH5 EXPRESSION TAG SEQADV 3K1Z TYR A 263 UNP Q9BSH5 EXPRESSION TAG SEQADV 3K1Z LYS A 264 UNP Q9BSH5 EXPRESSION TAG SEQADV 3K1Z ASP A 265 UNP Q9BSH5 EXPRESSION TAG SEQADV 3K1Z ASP A 266 UNP Q9BSH5 EXPRESSION TAG SEQADV 3K1Z ASP A 267 UNP Q9BSH5 EXPRESSION TAG SEQADV 3K1Z ASP A 268 UNP Q9BSH5 EXPRESSION TAG SEQADV 3K1Z LYS A 269 UNP Q9BSH5 EXPRESSION TAG SEQRES 1 A 263 MSE ARG LEU LEU THR TRP ASP VAL LYS ASP THR LEU LEU SEQRES 2 A 263 ARG LEU ARG HIS PRO LEU GLY GLU ALA TYR ALA THR LYS SEQRES 3 A 263 ALA ARG ALA HIS GLY LEU GLU VAL GLU PRO SER ALA LEU SEQRES 4 A 263 GLU GLN GLY PHE ARG GLN ALA TYR ARG ALA GLN SER HIS SEQRES 5 A 263 SER PHE PRO ASN TYR GLY LEU SER HIS GLY LEU THR SER SEQRES 6 A 263 ARG GLN TRP TRP LEU ASP VAL VAL LEU GLN THR PHE HIS SEQRES 7 A 263 LEU ALA GLY VAL GLN ASP ALA GLN ALA VAL ALA PRO ILE SEQRES 8 A 263 ALA GLU GLN LEU TYR LYS ASP PHE SER HIS PRO CYS THR SEQRES 9 A 263 TRP GLN VAL LEU ASP GLY ALA GLU ASP THR LEU ARG GLU SEQRES 10 A 263 CYS ARG THR ARG GLY LEU ARG LEU ALA VAL ILE SER ASN SEQRES 11 A 263 PHE ASP ARG ARG LEU GLU GLY ILE LEU GLY GLY LEU GLY SEQRES 12 A 263 LEU ARG GLU HIS PHE ASP PHE VAL LEU THR SER GLU ALA SEQRES 13 A 263 ALA GLY TRP PRO LYS PRO ASP PRO ARG ILE PHE GLN GLU SEQRES 14 A 263 ALA LEU ARG LEU ALA HIS MSE GLU PRO VAL VAL ALA ALA SEQRES 15 A 263 HIS VAL GLY ASP ASN TYR LEU CYS ASP TYR GLN GLY PRO SEQRES 16 A 263 ARG ALA VAL GLY MSE HIS SER PHE LEU VAL VAL GLY PRO SEQRES 17 A 263 GLN ALA LEU ASP PRO VAL VAL ARG ASP SER VAL PRO LYS SEQRES 18 A 263 GLU HIS ILE LEU PRO SER LEU ALA HIS LEU LEU PRO ALA SEQRES 19 A 263 LEU ASP CYS LEU GLU GLY SER ALA GLU ASN LEU TYR PHE SEQRES 20 A 263 GLN SER HIS HIS HIS HIS HIS HIS ASP TYR LYS ASP ASP SEQRES 21 A 263 ASP ASP LYS MODRES 3K1Z MSE A 7 MET SELENOMETHIONINE MODRES 3K1Z MSE A 182 MET SELENOMETHIONINE MODRES 3K1Z MSE A 206 MET SELENOMETHIONINE HET MSE A 7 8 HET MSE A 182 8 HET MSE A 206 8 HET EDO A 2 4 HET GOL A 3 6 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 2 EDO C2 H6 O2 FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *303(H2 O) HELIX 1 1 PRO A 24 HIS A 36 1 13 HELIX 2 2 GLU A 41 PHE A 60 1 20 HELIX 3 3 PRO A 61 GLY A 68 5 8 HELIX 4 4 THR A 70 ALA A 86 1 17 HELIX 5 5 ASP A 90 PHE A 105 1 16 HELIX 6 6 SER A 106 CYS A 109 5 4 HELIX 7 7 GLY A 116 ARG A 127 1 12 HELIX 8 8 ARG A 140 LEU A 148 1 9 HELIX 9 9 LEU A 150 PHE A 154 5 5 HELIX 10 10 SER A 160 GLY A 164 1 5 HELIX 11 11 ASP A 169 HIS A 181 1 13 HELIX 12 12 GLU A 183 VAL A 185 5 3 HELIX 13 13 ASN A 193 TYR A 198 1 6 HELIX 14 14 TYR A 198 ALA A 203 1 6 HELIX 15 15 ASP A 218 VAL A 225 1 8 HELIX 16 16 PRO A 226 GLU A 228 5 3 HELIX 17 17 SER A 233 ALA A 235 5 3 HELIX 18 18 HIS A 236 SER A 247 1 12 SHEET 1 A 6 VAL A 157 THR A 159 0 SHEET 2 A 6 ARG A 130 SER A 135 1 N VAL A 133 O LEU A 158 SHEET 3 A 6 LEU A 9 TRP A 12 1 N LEU A 10 O ARG A 130 SHEET 4 A 6 ALA A 187 GLY A 191 1 O ALA A 188 N THR A 11 SHEET 5 A 6 HIS A 207 VAL A 211 1 O HIS A 207 N ALA A 187 SHEET 6 A 6 ILE A 230 LEU A 231 1 O LEU A 231 N LEU A 210 SHEET 1 B 2 LEU A 19 LEU A 21 0 SHEET 2 B 2 TRP A 111 VAL A 113 -1 O GLN A 112 N ARG A 20 LINK C MSE A 7 N ARG A 8 1555 1555 1.33 LINK C HIS A 181 N MSE A 182 1555 1555 1.34 LINK C MSE A 182 N GLU A 183 1555 1555 1.32 LINK C GLY A 205 N MSE A 206 1555 1555 1.33 LINK C MSE A 206 N HIS A 207 1555 1555 1.33 CISPEP 1 LYS A 167 PRO A 168 0 9.72 SITE 1 AC1 5 TYR A 63 TRP A 75 PHE A 137 ASP A 138 SITE 2 AC1 5 HOH A 397 SITE 1 AC2 6 TYR A 29 TRP A 75 LEU A 101 TYR A 102 SITE 2 AC2 6 PHE A 105 ARG A 140 CRYST1 51.625 62.455 79.665 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019370 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016012 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012553 0.00000 HETATM 1 N MSE A 7 5.537 15.804 12.197 1.00 15.91 N HETATM 2 CA MSE A 7 4.938 14.495 11.745 1.00 9.63 C HETATM 3 C MSE A 7 4.709 14.528 10.240 1.00 10.36 C HETATM 4 O MSE A 7 4.374 15.585 9.701 1.00 12.63 O HETATM 5 CB MSE A 7 3.623 14.235 12.462 1.00 11.01 C HETATM 6 CG MSE A 7 3.277 12.778 12.623 1.00 11.02 C HETATM 7 SE MSE A 7 4.426 11.806 13.787 1.00 13.28 SE HETATM 8 CE MSE A 7 3.849 12.562 15.463 1.00 8.11 C