HEADER HYDROLASE 30-SEP-09 3K2K TITLE CRYSTAL STRUCTURE OF PUTATIVE CARBOXYPEPTIDASE (YP_103406.1) FROM TITLE 2 BURKHOLDERIA MALLEI ATCC 23344 AT 2.49 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE CARBOXYPEPTIDASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA MALLEI ATCC 23344; SOURCE 3 ORGANISM_COMMON: PSEUDOMONAS MALLEI; SOURCE 4 ORGANISM_TAXID: 243160; SOURCE 5 ATCC: 23344; SOURCE 6 GENE: BMA1798; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PUTATIVE CARBOXYPEPTIDASE, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, KEYWDS 3 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 3K2K 1 REMARK SEQADV REVDAT 4 17-JUL-19 3K2K 1 REMARK LINK REVDAT 3 25-OCT-17 3K2K 1 REMARK REVDAT 2 13-JUL-11 3K2K 1 VERSN REVDAT 1 03-NOV-09 3K2K 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE CARBOXYPEPTIDASE (YP_103406.1) JRNL TITL 2 FROM BURKHOLDERIA MALLEI ATCC 23344 AT 2.49 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0053 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 34608 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1742 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.49 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2255 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.3030 REMARK 3 BIN FREE R VALUE SET COUNT : 112 REMARK 3 BIN FREE R VALUE : 0.3190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3052 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 160 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 61.88 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.18000 REMARK 3 B22 (A**2) : -1.18000 REMARK 3 B33 (A**2) : 2.37000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.160 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.148 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.096 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.767 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3168 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2159 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4302 ; 1.563 ; 1.929 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5186 ; 0.905 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 391 ; 5.018 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 164 ;31.612 ;23.049 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 479 ;14.463 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;20.219 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 439 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3628 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 722 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1931 ; 1.860 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 787 ; 0.432 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3087 ; 3.355 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1237 ; 5.993 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1212 ; 7.866 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -7 A 383 REMARK 3 ORIGIN FOR THE GROUP (A): 107.7147 2.1292 33.0333 REMARK 3 T TENSOR REMARK 3 T11: 0.0095 T22: 0.1470 REMARK 3 T33: 0.1114 T12: -0.0163 REMARK 3 T13: 0.0106 T23: -0.0185 REMARK 3 L TENSOR REMARK 3 L11: 1.0800 L22: 1.1779 REMARK 3 L33: 1.2748 L12: -0.1256 REMARK 3 L13: 0.1107 L23: -0.0943 REMARK 3 S TENSOR REMARK 3 S11: 0.0313 S12: 0.1244 S13: 0.0316 REMARK 3 S21: -0.0723 S22: -0.0079 S23: -0.2673 REMARK 3 S31: -0.0430 S32: 0.3604 S33: -0.0235 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1.HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2.ATOM RECORDS CONTAIN RESIDUAL B FACTORS REMARK 3 ONLY. 3.A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE REMARK 3 ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED REMARK 3 SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4.CHLORIDE REMARK 3 (CL) AND GLYCEROL (GOL) FROM THE CRYSTALLIZATION AND REMARK 3 CRYOPROTECTION SOLUTION HAVE BEEN MODELED IN THE SOLVENT REMARK 3 STRUCTURE. 5.THE RAMACHANDRAN OUTLIER AT GLN39 IS SUPPORTED BY REMARK 3 ELECTRON DENSITY. REMARK 4 REMARK 4 3K2K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000055465. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97931 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT MIRROR, VERTICAL AND REMARK 200 HORIZONTAL FOCUSSING MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34624 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.490 REMARK 200 RESOLUTION RANGE LOW (A) : 29.553 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.4500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.78000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4.3000M NACL, 0.1M HEPES PH 7.5, REMARK 280 ADDITIVE: 0.006 M CALCIUM CHLORIDE, NANODROP, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 81.18750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 81.18750 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.19850 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 81.18750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.09925 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 81.18750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 111.29775 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 81.18750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 111.29775 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 81.18750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 37.09925 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 81.18750 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 81.18750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 74.19850 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 81.18750 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 81.18750 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 74.19850 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 81.18750 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 111.29775 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 81.18750 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 37.09925 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 81.18750 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 37.09925 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 81.18750 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 111.29775 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 81.18750 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 81.18750 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 74.19850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING ANALYSIS AND SIZE EXCLUSION CHROMATOGRAPHY REMARK 300 COMBINED WITH STATIC LIGHT SCATTERING SUGGEST THE ASSIGNMENT OF A REMARK 300 TETRAMER AS THE SIGNIFICANT OLIGOMERIC FORM IN SOLUTION UNDER THE REMARK 300 CONDITIONS TESTED. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 52010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -160.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 81.18750 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 -81.18750 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 74.19850 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 162.37500 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 81.18750 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 81.18750 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 74.19850 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -18 REMARK 465 GLY A -17 REMARK 465 SER A -16 REMARK 465 ASP A -15 REMARK 465 LYS A -14 REMARK 465 ILE A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 GLU A 156 REMARK 465 ALA A 157 REMARK 465 GLY A 158 REMARK 465 ALA A 159 REMARK 465 ALA A 384 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 20 CG CD OE1 OE2 REMARK 470 ARG A 21 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 36 CD OE1 OE2 REMARK 470 LYS A 162 NZ REMARK 470 GLN A 290 CD OE1 NE2 REMARK 470 ARG A 292 NE CZ NH1 NH2 REMARK 470 ARG A 321 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 322 CG CD OE1 OE2 REMARK 470 GLU A 356 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 73 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A -6 -23.93 87.18 REMARK 500 SER A 7 18.61 -159.33 REMARK 500 ALA A 13 115.30 -165.30 REMARK 500 CYS A 19 54.77 -149.15 REMARK 500 ALA A 24 41.35 -142.14 REMARK 500 GLN A 39 -41.39 -166.06 REMARK 500 TYR A 42 117.51 -171.05 REMARK 500 SER A 246 53.42 -144.28 REMARK 500 MSE A 283 44.15 -82.07 REMARK 500 ALA A 324 -116.62 41.63 REMARK 500 LYS A 348 -84.15 -85.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 385 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 386 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 387 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 388 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 389 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 375074 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. DBREF 3K2K A 1 384 UNP Q62IR3 Q62IR3_BURMA 1 384 SEQADV 3K2K MSE A -18 UNP Q62IR3 EXPRESSION TAG SEQADV 3K2K GLY A -17 UNP Q62IR3 EXPRESSION TAG SEQADV 3K2K SER A -16 UNP Q62IR3 EXPRESSION TAG SEQADV 3K2K ASP A -15 UNP Q62IR3 EXPRESSION TAG SEQADV 3K2K LYS A -14 UNP Q62IR3 EXPRESSION TAG SEQADV 3K2K ILE A -13 UNP Q62IR3 EXPRESSION TAG SEQADV 3K2K HIS A -12 UNP Q62IR3 EXPRESSION TAG SEQADV 3K2K HIS A -11 UNP Q62IR3 EXPRESSION TAG SEQADV 3K2K HIS A -10 UNP Q62IR3 EXPRESSION TAG SEQADV 3K2K HIS A -9 UNP Q62IR3 EXPRESSION TAG SEQADV 3K2K HIS A -8 UNP Q62IR3 EXPRESSION TAG SEQADV 3K2K HIS A -7 UNP Q62IR3 EXPRESSION TAG SEQADV 3K2K GLU A -6 UNP Q62IR3 EXPRESSION TAG SEQADV 3K2K ASN A -5 UNP Q62IR3 EXPRESSION TAG SEQADV 3K2K LEU A -4 UNP Q62IR3 EXPRESSION TAG SEQADV 3K2K TYR A -3 UNP Q62IR3 EXPRESSION TAG SEQADV 3K2K PHE A -2 UNP Q62IR3 EXPRESSION TAG SEQADV 3K2K GLN A -1 UNP Q62IR3 EXPRESSION TAG SEQADV 3K2K GLY A 0 UNP Q62IR3 EXPRESSION TAG SEQRES 1 A 403 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS GLU SEQRES 2 A 403 ASN LEU TYR PHE GLN GLY MSE THR LEU SER ILE THR SER SEQRES 3 A 403 ASN PHE ASP ALA GLY ALA ILE ASP VAL VAL SER CYS GLU SEQRES 4 A 403 ARG ALA ASP ALA ILE ARG LEU ARG VAL ARG GLY ASP ASN SEQRES 5 A 403 ARG SER GLU PHE ALA GLN TRP PHE TYR PHE ARG LEU THR SEQRES 6 A 403 GLY ALA ARG GLY GLU ARG CYS VAL MSE THR PHE GLU ASN SEQRES 7 A 403 ALA ASN ASP CYS ALA TYR PRO ALA GLY TRP ARG ASP TYR SEQRES 8 A 403 ARG ALA VAL ALA SER TYR ASP ARG VAL ASN TRP PHE ARG SEQRES 9 A 403 VAL PRO THR SER TYR ASP GLY GLN MSE LEU THR ILE ASP SEQRES 10 A 403 HIS THR PRO GLU PHE ASP SER ILE HIS TYR ALA TYR PHE SEQRES 11 A 403 GLU PRO TYR SER GLU GLU ARG HIS SER GLU PHE LEU GLY SEQRES 12 A 403 ALA VAL GLN GLN MSE PRO GLN ALA SER VAL VAL GLU LEU SEQRES 13 A 403 GLY ARG THR VAL GLU GLY ARG PRO MSE SER LEU VAL VAL SEQRES 14 A 403 LEU GLY THR PRO ASP GLU ALA GLY ALA ALA LYS LYS LYS SEQRES 15 A 403 VAL TRP ILE ILE ALA ARG GLN HIS PRO GLY GLU SER MSE SEQRES 16 A 403 ALA GLU TRP PHE ILE GLU GLY LEU VAL LYS ARG LEU VAL SEQRES 17 A 403 GLY TRP GLY ASP TRP SER GLY ASP PRO VAL ALA ARG LYS SEQRES 18 A 403 LEU TYR ASP HIS ALA THR PHE TYR ILE VAL PRO ASN MSE SEQRES 19 A 403 ASN PRO ASP GLY SER VAL HIS GLY ASN LEU ARG THR ASN SEQRES 20 A 403 ALA ALA GLY ALA ASN LEU ASN ARG GLU TRP MSE GLU PRO SEQRES 21 A 403 ASP ALA GLU ARG SER PRO GLU VAL LEU VAL VAL ARG ASP SEQRES 22 A 403 ALA ILE HIS ALA ILE GLY CYS ASP LEU PHE PHE ASP ILE SEQRES 23 A 403 HIS GLY ASP GLU ASP LEU PRO TYR VAL PHE ALA ALA GLY SEQRES 24 A 403 SER GLU MSE LEU PRO GLY PHE THR GLU GLN GLN ARG VAL SEQRES 25 A 403 GLU GLN SER ALA PHE ILE ASP SER PHE LYS ARG ALA SER SEQRES 26 A 403 PRO ASP PHE GLN ASP GLU HIS GLY TYR PRO PRO GLY LYS SEQRES 27 A 403 TYR ARG GLU ASP ALA PHE LYS LEU ALA SER LYS TYR ILE SEQRES 28 A 403 GLY HIS ARG PHE GLY CYS LEU SER LEU THR LEU GLU MSE SEQRES 29 A 403 PRO PHE LYS ASP ASN ALA ASN LEU PRO ASP GLU HIS ILE SEQRES 30 A 403 GLY TRP ASN GLY ALA ARG SER ALA SER LEU GLY ALA ALA SEQRES 31 A 403 MSE LEU GLY ALA ILE LEU GLU HIS VAL ARG ALA PHE ALA MODRES 3K2K MSE A 1 MET SELENOMETHIONINE MODRES 3K2K MSE A 55 MET SELENOMETHIONINE MODRES 3K2K MSE A 94 MET SELENOMETHIONINE MODRES 3K2K MSE A 129 MET SELENOMETHIONINE MODRES 3K2K MSE A 146 MET SELENOMETHIONINE MODRES 3K2K MSE A 176 MET SELENOMETHIONINE MODRES 3K2K MSE A 215 MET SELENOMETHIONINE MODRES 3K2K MSE A 239 MET SELENOMETHIONINE MODRES 3K2K MSE A 283 MET SELENOMETHIONINE MODRES 3K2K MSE A 345 MET SELENOMETHIONINE MODRES 3K2K MSE A 372 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 55 8 HET MSE A 94 8 HET MSE A 129 8 HET MSE A 146 8 HET MSE A 176 8 HET MSE A 215 8 HET MSE A 239 8 HET MSE A 283 8 HET MSE A 345 8 HET MSE A 372 8 HET CL A 385 1 HET CL A 386 1 HET CL A 387 1 HET CL A 388 1 HET GOL A 389 6 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 2 CL 4(CL 1-) FORMUL 6 GOL C3 H8 O3 FORMUL 7 HOH *160(H2 O) HELIX 1 1 ARG A 21 ALA A 24 5 4 HELIX 2 2 ASN A 59 CYS A 63 5 5 HELIX 3 3 TYR A 65 ARG A 70 5 6 HELIX 4 4 SER A 115 GLN A 127 1 13 HELIX 5 5 SER A 175 VAL A 189 1 15 HELIX 6 6 TRP A 191 SER A 195 5 5 HELIX 7 7 PRO A 198 HIS A 206 1 9 HELIX 8 8 ASN A 216 HIS A 222 1 7 HELIX 9 9 ASN A 233 GLU A 237 5 5 HELIX 10 10 SER A 246 GLY A 260 1 15 HELIX 11 11 THR A 288 SER A 306 1 19 HELIX 12 12 PRO A 316 TYR A 320 5 5 HELIX 13 13 ASP A 323 LYS A 326 5 4 HELIX 14 14 LEU A 327 GLY A 337 1 11 HELIX 15 15 ASN A 361 PHE A 383 1 23 SHEET 1 A 5 SER A 4 THR A 6 0 SHEET 2 A 5 TYR A 42 THR A 46 -1 O ARG A 44 N THR A 6 SHEET 3 A 5 SER A 105 ALA A 109 -1 O ILE A 106 N LEU A 45 SHEET 4 A 5 VAL A 75 SER A 77 -1 N SER A 77 O HIS A 107 SHEET 5 A 5 PHE A 84 ARG A 85 -1 O PHE A 84 N ALA A 76 SHEET 1 B 5 ASP A 15 SER A 18 0 SHEET 2 B 5 ILE A 25 ARG A 28 -1 O ARG A 26 N SER A 18 SHEET 3 B 5 CYS A 53 PHE A 57 1 O THR A 56 N LEU A 27 SHEET 4 B 5 LEU A 95 HIS A 99 -1 O HIS A 99 N CYS A 53 SHEET 5 B 5 THR A 88 TYR A 90 -1 N SER A 89 O THR A 96 SHEET 1 C 7 ALA A 132 ARG A 139 0 SHEET 2 C 7 PRO A 145 LEU A 151 -1 O LEU A 148 N VAL A 135 SHEET 3 C 7 ALA A 207 VAL A 212 -1 O ILE A 211 N VAL A 149 SHEET 4 C 7 LYS A 162 ALA A 168 1 N VAL A 164 O TYR A 210 SHEET 5 C 7 LEU A 263 ASP A 270 1 O ILE A 267 N ILE A 167 SHEET 6 C 7 LEU A 339 PRO A 346 1 O LEU A 343 N HIS A 268 SHEET 7 C 7 PHE A 277 ALA A 279 -1 N PHE A 277 O GLU A 344 LINK C GLY A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N THR A 2 1555 1555 1.34 LINK C VAL A 54 N MSE A 55 1555 1555 1.33 LINK C MSE A 55 N THR A 56 1555 1555 1.33 LINK C GLN A 93 N MSE A 94 1555 1555 1.34 LINK C MSE A 94 N LEU A 95 1555 1555 1.32 LINK C GLN A 128 N MSE A 129 1555 1555 1.33 LINK C MSE A 129 N PRO A 130 1555 1555 1.33 LINK C PRO A 145 N MSE A 146 1555 1555 1.33 LINK C MSE A 146 N SER A 147 1555 1555 1.33 LINK C SER A 175 N MSE A 176 1555 1555 1.34 LINK C MSE A 176 N ALA A 177 1555 1555 1.33 LINK C ASN A 214 N MSE A 215 1555 1555 1.33 LINK C MSE A 215 N ASN A 216 1555 1555 1.34 LINK C TRP A 238 N MSE A 239 1555 1555 1.33 LINK C MSE A 239 N GLU A 240 1555 1555 1.33 LINK C GLU A 282 N MSE A 283 1555 1555 1.32 LINK C MSE A 283 N LEU A 284 1555 1555 1.33 LINK C GLU A 344 N MSE A 345 1555 1555 1.33 LINK C MSE A 345 N PRO A 346 1555 1555 1.34 LINK C ALA A 371 N MSE A 372 1555 1555 1.32 LINK C MSE A 372 N LEU A 373 1555 1555 1.34 SITE 1 AC1 3 LYS A 303 GLN A 310 ASP A 311 SITE 1 AC2 4 SER A 7 ALA A 13 ILE A 14 ARG A 30 SITE 1 AC3 4 HIS A 171 ARG A 226 ASN A 235 ARG A 236 SITE 1 AC4 2 ARG A 335 HOH A 464 SITE 1 AC5 7 ARG A 44 SER A 105 HIS A 119 SER A 120 SITE 2 AC5 7 SER A 147 HOH A 473 HOH A 484 CRYST1 162.375 162.375 148.397 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006159 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006159 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006739 0.00000