HEADER TOXIN/ANTITOXIN 01-OCT-09 3K33 TITLE CRYSTAL STRUCTURE OF THE PHD-DOC COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEATH ON CURING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PREVENT HOST DEATH PROTEIN; COMPND 7 CHAIN: B, C, D; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: POLYPEPTIDE OF UNKNOWN AMINO ACIDS AND SOURCE; COMPND 11 CHAIN: E; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE P1; SOURCE 3 ORGANISM_COMMON: BACTERIOPHAGE P1; SOURCE 4 ORGANISM_TAXID: 10678; SOURCE 5 GENE: DOC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21B; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE P1; SOURCE 13 ORGANISM_COMMON: BACTERIOPHAGE P1; SOURCE 14 ORGANISM_TAXID: 10678; SOURCE 15 GENE: PHD; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET21B; SOURCE 21 MOL_ID: 3; SOURCE 22 ORGANISM_SCIENTIFIC: UNIDENTIFIED; SOURCE 23 ORGANISM_COMMON: UNIDENTIFIED; SOURCE 24 ORGANISM_TAXID: 32644; SOURCE 25 EXPRESSION_SYSTEM: UNIDENTIFIED; SOURCE 26 EXPRESSION_SYSTEM_COMMON: UNIDENTIFIED; SOURCE 27 EXPRESSION_SYSTEM_TAXID: 32644 KEYWDS PHD, DOC, FIC, TOXIN, ANTITOXIN, INTRINSIC DISORDER, ALLOSTERY, KEYWDS 2 TRANSCRIPTION REGULATION, RIBOSOME INHIBITOR, TOXIN-ANTITOXIN KEYWDS 3 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.LORIS,A.GARCIA-PINO REVDAT 2 06-SEP-23 3K33 1 REMARK DBREF REVDAT 1 18-AUG-10 3K33 0 JRNL AUTH A.GARCIA-PINO,S.BALASUBRAMANIAN,L.WYNS,E.GAZIT,H.DE GREVE, JRNL AUTH 2 R.D.MAGNUSON,D.CHARLIER,N.A.VAN NULAND,R.LORIS JRNL TITL ALLOSTERY AND INTRINSIC DISORDER MEDIATE TRANSCRIPTION JRNL TITL 2 REGULATION BY CONDITIONAL COOPERATIVITY. JRNL REF CELL(CAMBRIDGE,MASS.) V. 142 101 2010 JRNL REFN ISSN 0092-8674 JRNL PMID 20603017 JRNL DOI 10.1016/J.CELL.2010.05.039 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.160 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 19121 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.258 REMARK 3 R VALUE (WORKING SET) : 0.257 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 965 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.8310 - 4.5893 0.98 2859 152 0.2839 0.2889 REMARK 3 2 4.5893 - 3.6433 0.98 2633 135 0.2262 0.2495 REMARK 3 3 3.6433 - 3.1830 0.97 2592 136 0.2403 0.3100 REMARK 3 4 3.1830 - 2.8920 0.98 2591 128 0.2531 0.2646 REMARK 3 5 2.8920 - 2.6848 0.97 2480 148 0.2544 0.2897 REMARK 3 6 2.6848 - 2.5265 0.97 2537 132 0.2475 0.2661 REMARK 3 7 2.5265 - 2.4000 0.96 2464 134 0.2515 0.3148 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.30 REMARK 3 B_SOL : 61.97 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 1.760 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2478 REMARK 3 ANGLE : 1.266 3349 REMARK 3 CHIRALITY : 0.233 387 REMARK 3 PLANARITY : 0.004 456 REMARK 3 DIHEDRAL : 18.390 848 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN E REMARK 3 ORIGIN FOR THE GROUP (A): -26.5200 -5.3573 51.5294 REMARK 3 T TENSOR REMARK 3 T11: 0.1711 T22: 0.1073 REMARK 3 T33: 0.1069 T12: 0.0891 REMARK 3 T13: 0.0044 T23: 0.0842 REMARK 3 L TENSOR REMARK 3 L11: 4.8999 L22: 1.8857 REMARK 3 L33: 6.5756 L12: 0.9644 REMARK 3 L13: -1.4729 L23: -1.2941 REMARK 3 S TENSOR REMARK 3 S11: -0.5270 S12: -0.1301 S13: -0.5753 REMARK 3 S21: 0.3020 S22: 0.4518 S23: -0.4111 REMARK 3 S31: 0.9549 S32: -0.3480 S33: -0.2609 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3K33 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000055484. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-APR-97 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19121 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 42.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : 0.08500 REMARK 200 FOR THE DATA SET : 23.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.22400 REMARK 200 R SYM FOR SHELL (I) : 0.22400 REMARK 200 FOR SHELL : 10.80 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3DD7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM ACETATE PH 4.5, 20 MM REMARK 280 CACL2 AND 35-40% V/V MPD, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293.0K, PH 7.4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 231.54733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 115.77367 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 115.77367 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 231.54733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS A HETEROOCTAMER CONSISTING OF A REMARK 300 LINEAR ARRAY WITH ARCHITECTURE PHD-PHD-DOC-PHD-PHD-DOC-PHD-PHD REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH D 138 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 125 REMARK 465 GLU A 126 REMARK 465 LYS B 68 REMARK 465 GLU B 69 REMARK 465 LEU B 70 REMARK 465 VAL B 71 REMARK 465 ASN B 72 REMARK 465 ARG B 73 REMARK 465 MET D 1 REMARK 465 ARG D 73 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 90 CG CD OE1 NE2 REMARK 470 ILE B 4 CD1 REMARK 470 ALA B 9 CB REMARK 470 ARG B 10 CD NE CZ NH1 NH2 REMARK 470 GLN C 2 CB CG CD OE1 NE2 REMARK 470 ILE C 4 CB CG1 CG2 CD1 REMARK 470 PHE C 6 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG C 10 CG CD NE CZ NH1 NH2 REMARK 470 LEU C 13 CD1 CD2 REMARK 470 GLU C 15 CG CD OE1 OE2 REMARK 470 ASN C 18 CG OD1 ND2 REMARK 470 GLU C 25 CB CG CD OE1 OE2 REMARK 470 VAL C 26 CG1 CG2 REMARK 470 ILE C 28 CG1 CG2 CD1 REMARK 470 ARG C 30 CB CG CD NE CZ NH1 NH2 REMARK 470 ARG C 31 CB CG CD NE CZ NH1 NH2 REMARK 470 ILE C 38 CB CG1 CG2 CD1 REMARK 470 THR C 43 OG1 CG2 REMARK 470 GLU C 45 CB CG CD OE1 OE2 REMARK 470 TYR C 47 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS C 49 CG CD CE NZ REMARK 470 ALA C 50 CB REMARK 470 GLN D 2 CG CD OE1 NE2 REMARK 470 ILE D 4 CG1 CG2 CD1 REMARK 470 ARG D 7 CB CG CD NE CZ NH1 NH2 REMARK 470 ALA D 9 CB REMARK 470 VAL D 16 CG1 CG2 REMARK 470 LEU D 17 CD1 CD2 REMARK 470 GLU D 21 CG CD OE1 OE2 REMARK 470 THR D 29 CB OG1 CG2 REMARK 470 ARG D 30 CB CG CD NE CZ NH1 NH2 REMARK 470 ARG D 31 CB CG CD NE CZ NH1 NH2 REMARK 470 ARG D 33 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 34 CB CG CD OE1 OE2 REMARK 470 VAL D 39 CG1 CG2 REMARK 470 SER D 40 OG REMARK 470 LYS D 41 CB CG CD CE NZ REMARK 470 LYS D 48 CG CD CE NZ REMARK 470 LYS D 49 CG CD CE NZ REMARK 470 ALA D 50 CB REMARK 470 PHE D 56 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU D 59 CG CD1 CD2 REMARK 470 PHE D 60 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP D 61 CB CG OD1 OD2 REMARK 470 THR D 62 OG1 CG2 REMARK 470 THR D 66 OG1 CG2 REMARK 470 ASN D 67 CG OD1 ND2 REMARK 470 LYS D 68 CG CD CE NZ REMARK 470 GLU D 69 OE1 OE2 REMARK 470 VAL D 71 CB CG1 CG2 REMARK 470 ASN D 72 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 12 46.67 -141.08 REMARK 500 ALA C 22 6.63 -68.58 REMARK 500 PHE D 60 30.39 74.29 REMARK 500 ASP D 61 -77.65 -126.32 REMARK 500 THR D 62 -85.80 132.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT D 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3DD7 RELATED DB: PDB REMARK 900 STRUCTURE OF DOCH66Y IN COMPLEX WITH THE C-TERMINUS OF PHD REMARK 900 RELATED ID: 3HS2 RELATED DB: PDB REMARK 900 STRUCTURE OF LIGAND-FREE PHD IN SPACE GROUP C2 REMARK 900 RELATED ID: 3HRY RELATED DB: PDB REMARK 900 STRUCTURE OF LIGAND-FREE PHD IN SPACE GROUP P3121 DBREF 3K33 A 1 126 UNP Q06259 DOC_BPP1 1 126 DBREF 3K33 B 1 73 UNP Q06253 PHD_BPP1 1 73 DBREF 3K33 C 1 73 UNP Q06253 PHD_BPP1 1 73 DBREF 3K33 D 1 73 UNP Q06253 PHD_BPP1 1 73 DBREF 3K33 E 1 11 PDB 3K33 3K33 1 11 SEQRES 1 A 126 MET ARG HIS ILE SER PRO GLU GLU LEU ILE ALA LEU HIS SEQRES 2 A 126 ASP ALA ASN ILE SER ARG TYR GLY GLY LEU PRO GLY MET SEQRES 3 A 126 SER ASP PRO GLY ARG ALA GLU ALA ILE ILE GLY ARG VAL SEQRES 4 A 126 GLN ALA ARG VAL ALA TYR GLU GLU ILE THR ASP LEU PHE SEQRES 5 A 126 GLU VAL SER ALA THR TYR LEU VAL ALA THR ALA ARG GLY SEQRES 6 A 126 HIS ILE PHE ASN ASP ALA ASN LYS ARG THR ALA LEU ASN SEQRES 7 A 126 SER ALA LEU LEU PHE LEU ARG ARG ASN GLY VAL GLN VAL SEQRES 8 A 126 PHE ASP SER PRO GLU LEU ALA ASP LEU THR VAL GLY ALA SEQRES 9 A 126 ALA THR GLY GLU ILE SER VAL SER SER VAL ALA ASP THR SEQRES 10 A 126 LEU ARG ARG LEU TYR GLY SER ALA GLU SEQRES 1 B 73 MET GLN SER ILE ASN PHE ARG THR ALA ARG GLY ASN LEU SEQRES 2 B 73 SER GLU VAL LEU ASN ASN VAL GLU ALA GLY GLU GLU VAL SEQRES 3 B 73 GLU ILE THR ARG ARG GLY ARG GLU PRO ALA VAL ILE VAL SEQRES 4 B 73 SER LYS ALA THR PHE GLU ALA TYR LYS LYS ALA ALA LEU SEQRES 5 B 73 ASP ALA GLU PHE ALA SER LEU PHE ASP THR LEU ASP SER SEQRES 6 B 73 THR ASN LYS GLU LEU VAL ASN ARG SEQRES 1 C 73 MET GLN SER ILE ASN PHE ARG THR ALA ARG GLY ASN LEU SEQRES 2 C 73 SER GLU VAL LEU ASN ASN VAL GLU ALA GLY GLU GLU VAL SEQRES 3 C 73 GLU ILE THR ARG ARG GLY ARG GLU PRO ALA VAL ILE VAL SEQRES 4 C 73 SER LYS ALA THR PHE GLU ALA TYR LYS LYS ALA ALA LEU SEQRES 5 C 73 ASP ALA GLU PHE ALA SER LEU PHE ASP THR LEU ASP SER SEQRES 6 C 73 THR ASN LYS GLU LEU VAL ASN ARG SEQRES 1 D 73 MET GLN SER ILE ASN PHE ARG THR ALA ARG GLY ASN LEU SEQRES 2 D 73 SER GLU VAL LEU ASN ASN VAL GLU ALA GLY GLU GLU VAL SEQRES 3 D 73 GLU ILE THR ARG ARG GLY ARG GLU PRO ALA VAL ILE VAL SEQRES 4 D 73 SER LYS ALA THR PHE GLU ALA TYR LYS LYS ALA ALA LEU SEQRES 5 D 73 ASP ALA GLU PHE ALA SER LEU PHE ASP THR LEU ASP SER SEQRES 6 D 73 THR ASN LYS GLU LEU VAL ASN ARG SEQRES 1 E 12 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK HET ACT C 101 4 HET ACT D 201 4 HETNAM ACT ACETATE ION FORMUL 6 ACT 2(C2 H3 O2 1-) FORMUL 8 HOH *187(H2 O) HELIX 1 1 SER A 5 GLY A 21 1 17 HELIX 2 2 GLY A 30 GLU A 47 1 18 HELIX 3 3 ASP A 50 HIS A 66 1 17 HELIX 4 4 ALA A 71 ASN A 87 1 17 HELIX 5 5 GLU A 96 THR A 106 1 11 HELIX 6 6 SER A 110 TYR A 122 1 13 HELIX 7 7 PHE B 6 ASN B 12 1 7 HELIX 8 8 ASN B 12 ALA B 22 1 11 HELIX 9 9 SER B 40 LEU B 59 1 20 HELIX 10 10 ASN C 5 ASN C 12 1 8 HELIX 11 11 ASN C 12 ALA C 22 1 11 HELIX 12 12 LYS C 41 LEU C 63 1 23 HELIX 13 13 LEU C 63 ASN C 72 1 10 HELIX 14 14 PHE D 6 ASN D 12 1 7 HELIX 15 15 ASN D 12 GLU D 21 1 10 HELIX 16 16 LYS D 41 ALA D 57 1 17 HELIX 17 17 UNK E 5 UNK E 12 1 8 SHEET 1 A 3 GLN B 2 ASN B 5 0 SHEET 2 A 3 VAL B 26 THR B 29 1 O GLU B 27 N ILE B 4 SHEET 3 A 3 ALA B 36 ILE B 38 -1 O ILE B 38 N VAL B 26 SHEET 1 B 6 SER C 3 ILE C 4 0 SHEET 2 B 6 VAL C 26 ARG C 30 1 O THR C 29 N ILE C 4 SHEET 3 B 6 ARG C 33 SER C 40 -1 O ILE C 38 N VAL C 26 SHEET 4 B 6 ALA D 36 SER D 40 -1 O VAL D 39 N VAL C 37 SHEET 5 B 6 VAL D 26 THR D 29 -1 N VAL D 26 O ILE D 38 SHEET 6 B 6 SER D 3 ASN D 5 1 N ILE D 4 O THR D 29 CISPEP 1 THR B 66 ASN B 67 0 -10.77 CISPEP 2 LEU D 63 ASP D 64 0 0.47 CISPEP 3 GLU D 69 LEU D 70 0 8.40 SITE 1 AC1 3 ALA C 51 GLU C 55 HOH C 108 SITE 1 AC2 1 ASP A 93 CRYST1 48.295 48.295 347.321 90.00 90.00 120.00 P 32 2 1 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020706 0.011955 0.000000 0.00000 SCALE2 0.000000 0.023909 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002879 0.00000