HEADER HYDROLASE 05-OCT-09 3K46 TITLE CRYSTAL STRUCTURE OF FULL-LENGTH E. COLI BETA-GLUCURONIDASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-GLUCURONIDASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GUS, BETA-D-GLUCURONOSIDE GLUCURONOSOHYDROLASE; COMPND 5 EC: 3.2.1.31; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K-12; SOURCE 5 GENE: B1617, GURA, GUSA, JW1609, UIDA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS ALPHA/BETA BARREL, SUGAR-BINDING DOMAIN, BETA-SANDWICH DOMAIN, KEYWDS 2 GLYCOSYL HYDROLASE, GLYCOSIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR B.D.WALLACE,K.T.LANE,M.R.REDINBO REVDAT 4 06-SEP-23 3K46 1 SEQADV REVDAT 3 01-NOV-17 3K46 1 REMARK REVDAT 2 13-JUL-11 3K46 1 VERSN REVDAT 1 17-NOV-10 3K46 0 JRNL AUTH B.D.WALLACE,H.WANG,K.T.LANE,J.E.SCOTT,J.ORANS,J.S.KOO, JRNL AUTH 2 M.VENKATESH,C.JOBIN,L.A.YEH,S.MANI,M.R.REDINBO JRNL TITL ALLEVIATING CANCER DRUG TOXICITY BY INHIBITING A BACTERIAL JRNL TITL 2 ENZYME. JRNL REF SCIENCE V. 330 831 2010 JRNL REFN ISSN 0036-8075 JRNL PMID 21051639 JRNL DOI 10.1126/SCIENCE.1191175 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.62 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 43507 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 2205 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.6233 - 6.2756 0.99 2793 144 0.1951 0.2416 REMARK 3 2 6.2756 - 4.9881 1.00 2733 140 0.1897 0.2331 REMARK 3 3 4.9881 - 4.3596 1.00 2705 147 0.1572 0.1740 REMARK 3 4 4.3596 - 3.9619 1.00 2708 128 0.1711 0.2138 REMARK 3 5 3.9619 - 3.6785 0.99 2645 162 0.1818 0.2767 REMARK 3 6 3.6785 - 3.4619 0.99 2674 140 0.2078 0.2538 REMARK 3 7 3.4619 - 3.2887 0.99 2693 121 0.2102 0.2515 REMARK 3 8 3.2887 - 3.1457 0.99 2676 141 0.2237 0.2900 REMARK 3 9 3.1457 - 3.0247 0.99 2665 148 0.2415 0.3152 REMARK 3 10 3.0247 - 2.9204 0.99 2668 123 0.2486 0.2987 REMARK 3 11 2.9204 - 2.8292 0.99 2643 146 0.2551 0.3361 REMARK 3 12 2.8292 - 2.7484 0.98 2650 139 0.2421 0.3354 REMARK 3 13 2.7484 - 2.6761 0.94 2479 140 0.2677 0.3324 REMARK 3 14 2.6761 - 2.6108 0.90 2433 145 0.2745 0.3372 REMARK 3 15 2.6108 - 2.5515 0.85 2252 136 0.2777 0.3523 REMARK 3 16 2.5515 - 2.4970 0.71 1885 105 0.2863 0.3945 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.30 REMARK 3 B_SOL : 60.50 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.700 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 80.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -12.88900 REMARK 3 B22 (A**2) : 18.59000 REMARK 3 B33 (A**2) : -5.70100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.09800 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 9815 REMARK 3 ANGLE : 0.815 13353 REMARK 3 CHIRALITY : 0.062 1418 REMARK 3 PLANARITY : 0.004 1742 REMARK 3 DIHEDRAL : 18.099 3455 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3K46 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000055523. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43689 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.497 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.12500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.45200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: PDB ENTRY 3K4A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 3350, 0.2M MG ACETATE, 0.02% REMARK 280 SODIUM AZIDE, PH 7.4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 84.37250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.09650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 84.37250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 38.09650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 82390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -93.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -72.07906 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 102.93956 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 736 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 363 REMARK 465 GLY A 364 REMARK 465 PHE A 365 REMARK 465 GLU A 366 REMARK 465 ALA A 367 REMARK 465 GLY A 368 REMARK 465 LYS A 602 REMARK 465 GLN A 603 REMARK 465 ILE B 363 REMARK 465 GLY B 364 REMARK 465 PHE B 365 REMARK 465 GLU B 366 REMARK 465 ALA B 367 REMARK 465 GLY B 368 REMARK 465 GLY B 601 REMARK 465 LYS B 602 REMARK 465 GLN B 603 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 369 CG OD1 ND2 REMARK 470 LYS A 370 CG CD CE NZ REMARK 470 LYS B 370 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HIS A 240 O HOH A 667 1.26 REMARK 500 O ASP A 300 O HOH A 713 1.52 REMARK 500 CE MET A 407 O HOH A 833 1.71 REMARK 500 O ALA B 194 O HOH B 655 1.78 REMARK 500 O SER A -1 O HOH A 687 1.80 REMARK 500 OD2 ASP B 263 O HOH B 658 1.81 REMARK 500 O GLY A 362 O HOH A 758 1.86 REMARK 500 O ASN A 238 O HOH A 832 1.91 REMARK 500 O THR A 182 O ALA A 208 2.06 REMARK 500 O ALA A 194 O HOH A 627 2.06 REMARK 500 O PHE A 554 O GLY A 565 2.09 REMARK 500 C SER A -1 O HOH A 687 2.10 REMARK 500 O ASP A 436 O HOH A 757 2.15 REMARK 500 CG ASN B 198 O VAL B 237 2.16 REMARK 500 O ILE B 283 CD LYS B 286 2.16 REMARK 500 O LEU A 249 O HOH A 690 2.18 REMARK 500 CB ASN B 198 O VAL B 237 2.19 REMARK 500 O VAL B 193 NE2 HIS B 285 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET A 520 CG MET A 520 SD 0.166 REMARK 500 MET A 532 CG MET A 532 SD 0.159 REMARK 500 MET B 516 CG MET B 516 SD 0.165 REMARK 500 MET B 532 CG MET B 532 SD 0.158 REMARK 500 MET B 591 CG MET B 591 SD 0.165 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 8 C - N - CD ANGL. DEV. = -12.8 DEGREES REMARK 500 ASP B 185 N - CA - CB ANGL. DEV. = -11.5 DEGREES REMARK 500 ASP B 185 N - CA - C ANGL. DEV. = 22.1 DEGREES REMARK 500 ASN B 198 N - CA - CB ANGL. DEV. = -12.9 DEGREES REMARK 500 ASN B 198 N - CA - C ANGL. DEV. = 20.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 7 88.76 -158.93 REMARK 500 PRO A 8 34.36 30.56 REMARK 500 ALA A 56 38.31 38.25 REMARK 500 ARG A 83 73.85 61.17 REMARK 500 HIS A 93 -111.68 72.29 REMARK 500 ASN A 101 -6.80 71.82 REMARK 500 ALA A 124 -47.18 -25.66 REMARK 500 VAL A 184 -73.18 -101.34 REMARK 500 ALA A 194 -74.78 -97.48 REMARK 500 ASN A 198 160.14 -44.17 REMARK 500 TRP A 204 135.02 -177.00 REMARK 500 ASN A 209 56.53 73.14 REMARK 500 PRO A 239 -73.92 -134.14 REMARK 500 ARG A 295 -167.86 -102.19 REMARK 500 PHE A 357 46.56 -98.48 REMARK 500 ALA A 379 -75.31 -107.60 REMARK 500 MET A 407 145.08 -171.68 REMARK 500 TRP A 521 11.60 80.04 REMARK 500 ASN A 550 114.01 63.55 REMARK 500 ASN A 566 157.36 73.76 REMARK 500 GLN A 598 173.57 -56.82 REMARK 500 THR B 7 -143.02 -153.25 REMARK 500 PRO B 8 6.34 -57.50 REMARK 500 ALA B 90 135.97 -171.53 REMARK 500 HIS B 93 -71.35 91.83 REMARK 500 ASN B 100 -108.24 38.28 REMARK 500 ILE B 143 71.31 -116.73 REMARK 500 ASP B 185 -7.50 -55.12 REMARK 500 ASN B 198 137.77 -10.06 REMARK 500 VAL B 214 63.86 65.07 REMARK 500 PRO B 239 91.00 -59.43 REMARK 500 ASN B 284 48.87 70.82 REMARK 500 LEU B 301 -52.41 72.71 REMARK 500 TYR B 331 157.61 177.57 REMARK 500 PHE B 357 20.39 -70.94 REMARK 500 ALA B 379 -85.24 -110.07 REMARK 500 PRO B 440 -177.29 -65.31 REMARK 500 ASN B 550 112.63 75.95 REMARK 500 ASN B 566 -6.29 67.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 47 PRO A 48 53.62 REMARK 500 ILE A 143 PRO A 144 43.95 REMARK 500 VAL A 184 ASP A 185 -140.97 REMARK 500 VAL B 47 PRO B 48 51.33 REMARK 500 ILE B 143 PRO B 144 61.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 VAL A 47 10.03 REMARK 500 ILE A 143 11.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3K4A RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SELENOMETHIONINE SUBSTITUTED E. COLI BETA- REMARK 900 GLUCURONIDASE REMARK 900 RELATED ID: 3K4D RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF E. COLI BETA-GLUCURONIDASE WITH GLUCARO-D- REMARK 900 LACTAM INHIBITOR BOUND DBREF 3K46 A 1 603 UNP P05804 BGLR_ECOLI 1 603 DBREF 3K46 B 1 603 UNP P05804 BGLR_ECOLI 1 603 SEQADV 3K46 SER A -1 UNP P05804 EXPRESSION TAG SEQADV 3K46 HIS A 0 UNP P05804 EXPRESSION TAG SEQADV 3K46 SER B -1 UNP P05804 EXPRESSION TAG SEQADV 3K46 HIS B 0 UNP P05804 EXPRESSION TAG SEQRES 1 A 605 SER HIS MET LEU ARG PRO VAL GLU THR PRO THR ARG GLU SEQRES 2 A 605 ILE LYS LYS LEU ASP GLY LEU TRP ALA PHE SER LEU ASP SEQRES 3 A 605 ARG GLU ASN CYS GLY ILE ASP GLN ARG TRP TRP GLU SER SEQRES 4 A 605 ALA LEU GLN GLU SER ARG ALA ILE ALA VAL PRO GLY SER SEQRES 5 A 605 PHE ASN ASP GLN PHE ALA ASP ALA ASP ILE ARG ASN TYR SEQRES 6 A 605 ALA GLY ASN VAL TRP TYR GLN ARG GLU VAL PHE ILE PRO SEQRES 7 A 605 LYS GLY TRP ALA GLY GLN ARG ILE VAL LEU ARG PHE ASP SEQRES 8 A 605 ALA VAL THR HIS TYR GLY LYS VAL TRP VAL ASN ASN GLN SEQRES 9 A 605 GLU VAL MET GLU HIS GLN GLY GLY TYR THR PRO PHE GLU SEQRES 10 A 605 ALA ASP VAL THR PRO TYR VAL ILE ALA GLY LYS SER VAL SEQRES 11 A 605 ARG ILE THR VAL CYS VAL ASN ASN GLU LEU ASN TRP GLN SEQRES 12 A 605 THR ILE PRO PRO GLY MET VAL ILE THR ASP GLU ASN GLY SEQRES 13 A 605 LYS LYS LYS GLN SER TYR PHE HIS ASP PHE PHE ASN TYR SEQRES 14 A 605 ALA GLY ILE HIS ARG SER VAL MET LEU TYR THR THR PRO SEQRES 15 A 605 ASN THR TRP VAL ASP ASP ILE THR VAL VAL THR HIS VAL SEQRES 16 A 605 ALA GLN ASP CYS ASN HIS ALA SER VAL ASP TRP GLN VAL SEQRES 17 A 605 VAL ALA ASN GLY ASP VAL SER VAL GLU LEU ARG ASP ALA SEQRES 18 A 605 ASP GLN GLN VAL VAL ALA THR GLY GLN GLY THR SER GLY SEQRES 19 A 605 THR LEU GLN VAL VAL ASN PRO HIS LEU TRP GLN PRO GLY SEQRES 20 A 605 GLU GLY TYR LEU TYR GLU LEU CYS VAL THR ALA LYS SER SEQRES 21 A 605 GLN THR GLU CYS ASP ILE TYR PRO LEU ARG VAL GLY ILE SEQRES 22 A 605 ARG SER VAL ALA VAL LYS GLY GLU GLN PHE LEU ILE ASN SEQRES 23 A 605 HIS LYS PRO PHE TYR PHE THR GLY PHE GLY ARG HIS GLU SEQRES 24 A 605 ASP ALA ASP LEU ARG GLY LYS GLY PHE ASP ASN VAL LEU SEQRES 25 A 605 MET VAL HIS ASP HIS ALA LEU MET ASP TRP ILE GLY ALA SEQRES 26 A 605 ASN SER TYR ARG THR SER HIS TYR PRO TYR ALA GLU GLU SEQRES 27 A 605 MET LEU ASP TRP ALA ASP GLU HIS GLY ILE VAL VAL ILE SEQRES 28 A 605 ASP GLU THR ALA ALA VAL GLY PHE ASN LEU SER LEU GLY SEQRES 29 A 605 ILE GLY PHE GLU ALA GLY ASN LYS PRO LYS GLU LEU TYR SEQRES 30 A 605 SER GLU GLU ALA VAL ASN GLY GLU THR GLN GLN ALA HIS SEQRES 31 A 605 LEU GLN ALA ILE LYS GLU LEU ILE ALA ARG ASP LYS ASN SEQRES 32 A 605 HIS PRO SER VAL VAL MET TRP SER ILE ALA ASN GLU PRO SEQRES 33 A 605 ASP THR ARG PRO GLN GLY ALA ARG GLU TYR PHE ALA PRO SEQRES 34 A 605 LEU ALA GLU ALA THR ARG LYS LEU ASP PRO THR ARG PRO SEQRES 35 A 605 ILE THR CYS VAL ASN VAL MET PHE CYS ASP ALA HIS THR SEQRES 36 A 605 ASP THR ILE SER ASP LEU PHE ASP VAL LEU CYS LEU ASN SEQRES 37 A 605 ARG TYR TYR GLY TRP TYR VAL GLN SER GLY ASP LEU GLU SEQRES 38 A 605 THR ALA GLU LYS VAL LEU GLU LYS GLU LEU LEU ALA TRP SEQRES 39 A 605 GLN GLU LYS LEU HIS GLN PRO ILE ILE ILE THR GLU TYR SEQRES 40 A 605 GLY VAL ASP THR LEU ALA GLY LEU HIS SER MET TYR THR SEQRES 41 A 605 ASP MET TRP SER GLU GLU TYR GLN CYS ALA TRP LEU ASP SEQRES 42 A 605 MET TYR HIS ARG VAL PHE ASP ARG VAL SER ALA VAL VAL SEQRES 43 A 605 GLY GLU GLN VAL TRP ASN PHE ALA ASP PHE ALA THR SER SEQRES 44 A 605 GLN GLY ILE LEU ARG VAL GLY GLY ASN LYS LYS GLY ILE SEQRES 45 A 605 PHE THR ARG ASP ARG LYS PRO LYS SER ALA ALA PHE LEU SEQRES 46 A 605 LEU GLN LYS ARG TRP THR GLY MET ASN PHE GLY GLU LYS SEQRES 47 A 605 PRO GLN GLN GLY GLY LYS GLN SEQRES 1 B 605 SER HIS MET LEU ARG PRO VAL GLU THR PRO THR ARG GLU SEQRES 2 B 605 ILE LYS LYS LEU ASP GLY LEU TRP ALA PHE SER LEU ASP SEQRES 3 B 605 ARG GLU ASN CYS GLY ILE ASP GLN ARG TRP TRP GLU SER SEQRES 4 B 605 ALA LEU GLN GLU SER ARG ALA ILE ALA VAL PRO GLY SER SEQRES 5 B 605 PHE ASN ASP GLN PHE ALA ASP ALA ASP ILE ARG ASN TYR SEQRES 6 B 605 ALA GLY ASN VAL TRP TYR GLN ARG GLU VAL PHE ILE PRO SEQRES 7 B 605 LYS GLY TRP ALA GLY GLN ARG ILE VAL LEU ARG PHE ASP SEQRES 8 B 605 ALA VAL THR HIS TYR GLY LYS VAL TRP VAL ASN ASN GLN SEQRES 9 B 605 GLU VAL MET GLU HIS GLN GLY GLY TYR THR PRO PHE GLU SEQRES 10 B 605 ALA ASP VAL THR PRO TYR VAL ILE ALA GLY LYS SER VAL SEQRES 11 B 605 ARG ILE THR VAL CYS VAL ASN ASN GLU LEU ASN TRP GLN SEQRES 12 B 605 THR ILE PRO PRO GLY MET VAL ILE THR ASP GLU ASN GLY SEQRES 13 B 605 LYS LYS LYS GLN SER TYR PHE HIS ASP PHE PHE ASN TYR SEQRES 14 B 605 ALA GLY ILE HIS ARG SER VAL MET LEU TYR THR THR PRO SEQRES 15 B 605 ASN THR TRP VAL ASP ASP ILE THR VAL VAL THR HIS VAL SEQRES 16 B 605 ALA GLN ASP CYS ASN HIS ALA SER VAL ASP TRP GLN VAL SEQRES 17 B 605 VAL ALA ASN GLY ASP VAL SER VAL GLU LEU ARG ASP ALA SEQRES 18 B 605 ASP GLN GLN VAL VAL ALA THR GLY GLN GLY THR SER GLY SEQRES 19 B 605 THR LEU GLN VAL VAL ASN PRO HIS LEU TRP GLN PRO GLY SEQRES 20 B 605 GLU GLY TYR LEU TYR GLU LEU CYS VAL THR ALA LYS SER SEQRES 21 B 605 GLN THR GLU CYS ASP ILE TYR PRO LEU ARG VAL GLY ILE SEQRES 22 B 605 ARG SER VAL ALA VAL LYS GLY GLU GLN PHE LEU ILE ASN SEQRES 23 B 605 HIS LYS PRO PHE TYR PHE THR GLY PHE GLY ARG HIS GLU SEQRES 24 B 605 ASP ALA ASP LEU ARG GLY LYS GLY PHE ASP ASN VAL LEU SEQRES 25 B 605 MET VAL HIS ASP HIS ALA LEU MET ASP TRP ILE GLY ALA SEQRES 26 B 605 ASN SER TYR ARG THR SER HIS TYR PRO TYR ALA GLU GLU SEQRES 27 B 605 MET LEU ASP TRP ALA ASP GLU HIS GLY ILE VAL VAL ILE SEQRES 28 B 605 ASP GLU THR ALA ALA VAL GLY PHE ASN LEU SER LEU GLY SEQRES 29 B 605 ILE GLY PHE GLU ALA GLY ASN LYS PRO LYS GLU LEU TYR SEQRES 30 B 605 SER GLU GLU ALA VAL ASN GLY GLU THR GLN GLN ALA HIS SEQRES 31 B 605 LEU GLN ALA ILE LYS GLU LEU ILE ALA ARG ASP LYS ASN SEQRES 32 B 605 HIS PRO SER VAL VAL MET TRP SER ILE ALA ASN GLU PRO SEQRES 33 B 605 ASP THR ARG PRO GLN GLY ALA ARG GLU TYR PHE ALA PRO SEQRES 34 B 605 LEU ALA GLU ALA THR ARG LYS LEU ASP PRO THR ARG PRO SEQRES 35 B 605 ILE THR CYS VAL ASN VAL MET PHE CYS ASP ALA HIS THR SEQRES 36 B 605 ASP THR ILE SER ASP LEU PHE ASP VAL LEU CYS LEU ASN SEQRES 37 B 605 ARG TYR TYR GLY TRP TYR VAL GLN SER GLY ASP LEU GLU SEQRES 38 B 605 THR ALA GLU LYS VAL LEU GLU LYS GLU LEU LEU ALA TRP SEQRES 39 B 605 GLN GLU LYS LEU HIS GLN PRO ILE ILE ILE THR GLU TYR SEQRES 40 B 605 GLY VAL ASP THR LEU ALA GLY LEU HIS SER MET TYR THR SEQRES 41 B 605 ASP MET TRP SER GLU GLU TYR GLN CYS ALA TRP LEU ASP SEQRES 42 B 605 MET TYR HIS ARG VAL PHE ASP ARG VAL SER ALA VAL VAL SEQRES 43 B 605 GLY GLU GLN VAL TRP ASN PHE ALA ASP PHE ALA THR SER SEQRES 44 B 605 GLN GLY ILE LEU ARG VAL GLY GLY ASN LYS LYS GLY ILE SEQRES 45 B 605 PHE THR ARG ASP ARG LYS PRO LYS SER ALA ALA PHE LEU SEQRES 46 B 605 LEU GLN LYS ARG TRP THR GLY MET ASN PHE GLY GLU LYS SEQRES 47 B 605 PRO GLN GLN GLY GLY LYS GLN FORMUL 3 HOH *357(H2 O) HELIX 1 1 ASP A 57 ASN A 62 1 6 HELIX 2 2 THR A 119 VAL A 122 5 4 HELIX 3 3 ASP A 307 GLY A 322 1 16 HELIX 4 4 ALA A 334 GLY A 345 1 12 HELIX 5 5 ASN A 381 LYS A 400 1 20 HELIX 6 6 GLY A 420 ASP A 436 1 17 HELIX 7 7 ILE A 456 PHE A 460 5 5 HELIX 8 8 TYR A 469 GLN A 474 1 6 HELIX 9 9 ASP A 477 HIS A 497 1 21 HELIX 10 10 SER A 522 ASP A 538 1 17 HELIX 11 11 SER A 579 GLY A 590 1 12 HELIX 12 12 ARG B 33 SER B 37 5 5 HELIX 13 13 ASP B 57 ASN B 62 1 6 HELIX 14 14 PRO B 76 ALA B 80 5 5 HELIX 15 15 THR B 119 VAL B 122 5 4 HELIX 16 16 ASP B 307 GLY B 322 1 16 HELIX 17 17 ALA B 334 GLY B 345 1 12 HELIX 18 18 ASN B 381 LYS B 400 1 20 HELIX 19 19 ALA B 421 ASP B 436 1 16 HELIX 20 20 ILE B 456 PHE B 460 5 5 HELIX 21 21 ASP B 477 HIS B 497 1 21 HELIX 22 22 SER B 522 VAL B 540 1 19 HELIX 23 23 LYS B 578 GLY B 590 1 13 SHEET 1 A 4 ARG A 10 LYS A 13 0 SHEET 2 A 4 VAL A 174 THR A 178 -1 O THR A 178 N ARG A 10 SHEET 3 A 4 ILE A 84 PHE A 88 -1 N VAL A 85 O TYR A 177 SHEET 4 A 4 PHE A 114 ASP A 117 -1 O PHE A 114 N PHE A 88 SHEET 1 B 6 ARG A 43 ILE A 45 0 SHEET 2 B 6 TRP A 19 LEU A 23 -1 N PHE A 21 O ARG A 43 SHEET 3 B 6 ASN A 66 PHE A 74 -1 O GLN A 70 N ALA A 20 SHEET 4 B 6 SER A 127 ASN A 135 -1 O VAL A 132 N TYR A 69 SHEET 5 B 6 TYR A 94 VAL A 99 -1 N TRP A 98 O THR A 131 SHEET 6 B 6 GLN A 102 HIS A 107 -1 O VAL A 104 N VAL A 97 SHEET 1 C 2 GLY A 146 VAL A 148 0 SHEET 2 C 2 GLN A 158 TYR A 160 -1 O SER A 159 N MET A 147 SHEET 1 D 3 ASP A 186 THR A 191 0 SHEET 2 D 3 HIS A 199 VAL A 206 -1 O VAL A 202 N VAL A 190 SHEET 3 D 3 LEU A 234 VAL A 237 -1 O GLN A 235 N SER A 201 SHEET 1 E 4 VAL A 223 GLY A 227 0 SHEET 2 E 4 ASP A 211 ARG A 217 -1 N VAL A 214 O GLY A 227 SHEET 3 E 4 TYR A 250 LYS A 257 -1 O LYS A 257 N ASP A 211 SHEET 4 E 4 CYS A 262 VAL A 269 -1 O VAL A 269 N TYR A 250 SHEET 1 F 2 VAL A 274 LYS A 277 0 SHEET 2 F 2 GLN A 280 ILE A 283 -1 O LEU A 282 N ALA A 275 SHEET 1 G 8 ILE A 441 VAL A 444 0 SHEET 2 G 8 VAL A 405 ASN A 412 1 N ILE A 410 O THR A 442 SHEET 3 G 8 VAL A 347 GLU A 351 1 N ASP A 350 O SER A 409 SHEET 4 G 8 SER A 325 ARG A 327 1 N TYR A 326 O ILE A 349 SHEET 5 G 8 PHE A 290 GLY A 294 1 N THR A 291 O SER A 325 SHEET 6 G 8 VAL A 543 TRP A 549 1 O VAL A 544 N PHE A 290 SHEET 7 G 8 ILE A 500 GLU A 504 1 N ILE A 502 O GLN A 547 SHEET 8 G 8 LEU A 463 ASN A 466 1 N LEU A 463 O ILE A 501 SHEET 1 H 4 GLU B 11 LYS B 13 0 SHEET 2 H 4 VAL B 174 THR B 179 -1 O LEU B 176 N ILE B 12 SHEET 3 H 4 ARG B 83 PHE B 88 -1 N ARG B 87 O MET B 175 SHEET 4 H 4 PHE B 114 ASP B 117 -1 O ALA B 116 N LEU B 86 SHEET 1 I 6 ARG B 43 ILE B 45 0 SHEET 2 I 6 TRP B 19 LEU B 23 -1 N TRP B 19 O ILE B 45 SHEET 3 I 6 ASN B 66 PHE B 74 -1 O GLN B 70 N ALA B 20 SHEET 4 I 6 SER B 127 ASN B 135 -1 O ILE B 130 N ARG B 71 SHEET 5 I 6 TYR B 94 VAL B 99 -1 N TYR B 94 O ASN B 135 SHEET 6 I 6 GLN B 102 GLN B 108 -1 O GLN B 102 N VAL B 99 SHEET 1 J 2 GLY B 146 THR B 150 0 SHEET 2 J 2 LYS B 156 TYR B 160 -1 O LYS B 157 N ILE B 149 SHEET 1 K 2 ASP B 186 THR B 191 0 SHEET 2 K 2 SER B 201 VAL B 206 -1 O TRP B 204 N THR B 188 SHEET 1 L 3 ASP B 211 VAL B 212 0 SHEET 2 L 3 TYR B 250 LYS B 257 -1 O LYS B 257 N ASP B 211 SHEET 3 L 3 GLU B 215 ARG B 217 -1 N GLU B 215 O CYS B 253 SHEET 1 M 3 ASP B 211 VAL B 212 0 SHEET 2 M 3 TYR B 250 LYS B 257 -1 O LYS B 257 N ASP B 211 SHEET 3 M 3 CYS B 262 VAL B 269 -1 O LEU B 267 N LEU B 252 SHEET 1 N 2 VAL B 274 LYS B 277 0 SHEET 2 N 2 GLN B 280 ILE B 283 -1 O LEU B 282 N ALA B 275 SHEET 1 O 9 PHE B 290 GLY B 294 0 SHEET 2 O 9 SER B 325 ARG B 327 1 O SER B 325 N THR B 291 SHEET 3 O 9 VAL B 347 GLU B 351 1 O ILE B 349 N TYR B 326 SHEET 4 O 9 VAL B 405 ASN B 412 1 O MET B 407 N ASP B 350 SHEET 5 O 9 ILE B 441 ASN B 445 1 O THR B 442 N TRP B 408 SHEET 6 O 9 LEU B 463 ASN B 466 1 O CYS B 464 N ASN B 445 SHEET 7 O 9 ILE B 500 GLU B 504 1 O ILE B 501 N LEU B 463 SHEET 8 O 9 VAL B 543 TRP B 549 1 O GLY B 545 N ILE B 502 SHEET 9 O 9 PHE B 290 GLY B 294 1 N PHE B 290 O VAL B 544 CRYST1 168.745 76.193 125.666 90.00 125.00 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005926 0.000000 0.004150 0.00000 SCALE2 0.000000 0.013125 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009714 0.00000