HEADER OXIDOREDUCTASE 05-OCT-09 3K4K TITLE PYRANOSE 2-OXIDASE F454N MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: PYRANOSE 2-OXIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PYRANOSE OXIDASE; COMPND 5 EC: 1.1.3.10; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRAMETES OCHRACEA; SOURCE 3 ORGANISM_COMMON: WHITE-ROT FUNGUS; SOURCE 4 ORGANISM_TAXID: 230624; SOURCE 5 GENE: P2O; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21(D+) KEYWDS OXIDOREDUCTASE, GMC OXIDOREDUCTASE, F454N MUTANT, ROSSMANN FOLD, PHBH KEYWDS 2 FOLD, HOMOTETRAMER, 8-ALPHA-(N3) HISTIDYL FLAVINYLATION EXPDTA X-RAY DIFFRACTION AUTHOR C.DIVNE,T.C.TAN REVDAT 7 06-SEP-23 3K4K 1 REMARK REVDAT 6 13-OCT-21 3K4K 1 REMARK SEQADV LINK REVDAT 5 01-NOV-17 3K4K 1 REMARK REVDAT 4 12-NOV-14 3K4K 1 KEYWDS REVDAT 3 13-JUL-11 3K4K 1 VERSN REVDAT 2 30-JUN-10 3K4K 1 JRNL REVDAT 1 12-MAY-10 3K4K 0 JRNL AUTH O.SPADIUT,T.C.TAN,I.PISANELLI,D.HALTRICH,C.DIVNE JRNL TITL IMPORTANCE OF THE GATING SEGMENT IN THE JRNL TITL 2 SUBSTRATE-RECOGNITION LOOP OF PYRANOSE 2-OXIDASE. JRNL REF FEBS J. V. 277 2892 2010 JRNL REFN ISSN 1742-464X JRNL PMID 20528921 JRNL DOI 10.1111/J.1742-4658.2010.07705.X REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 81587 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1961 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 11672 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE SET COUNT : 276 REMARK 3 BIN FREE R VALUE : 0.2470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4531 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 436 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.49000 REMARK 3 B22 (A**2) : -0.49000 REMARK 3 B33 (A**2) : 0.97000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.085 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.085 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.059 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.099 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4704 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3159 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6400 ; 1.841 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7697 ; 1.011 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 574 ; 6.871 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 225 ;38.291 ;24.533 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 756 ;12.474 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;16.281 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 697 ; 0.161 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5229 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 939 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1005 ; 0.235 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3497 ; 0.213 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2381 ; 0.185 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2434 ; 0.092 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 302 ; 0.156 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.223 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 30 ; 0.252 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 68 ; 0.261 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 33 ; 0.119 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3634 ; 1.426 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1150 ; 0.363 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4670 ; 1.663 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2105 ; 2.739 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1730 ; 3.699 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 44 A 151 REMARK 3 ORIGIN FOR THE GROUP (A): 61.6390 45.8933 35.2148 REMARK 3 T TENSOR REMARK 3 T11: .0232 T22: .0605 REMARK 3 T33: .0216 T12: .0079 REMARK 3 T13: .0051 T23: -.0092 REMARK 3 L TENSOR REMARK 3 L11: .0732 L22: .0951 REMARK 3 L33: .0546 L12: .0657 REMARK 3 L13: -.0444 L23: -.0160 REMARK 3 S TENSOR REMARK 3 S11: -.0082 S12: .0237 S13: -.0175 REMARK 3 S21: .0021 S22: .0137 S23: .0059 REMARK 3 S31: -.0012 S32: -.0044 S33: -.0055 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 152 A 359 REMARK 3 ORIGIN FOR THE GROUP (A): 71.8458 55.5484 29.1273 REMARK 3 T TENSOR REMARK 3 T11: .0180 T22: .0625 REMARK 3 T33: .0164 T12: .0001 REMARK 3 T13: .0046 T23: -.0027 REMARK 3 L TENSOR REMARK 3 L11: .1682 L22: .1486 REMARK 3 L33: .1256 L12: .0124 REMARK 3 L13: -.0418 L23: .0712 REMARK 3 S TENSOR REMARK 3 S11: -.0014 S12: .0541 S13: -.0163 REMARK 3 S21: -.0025 S22: .0034 S23: .0026 REMARK 3 S31: -.0219 S32: .0233 S33: -.0020 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 360 A 449 REMARK 3 ORIGIN FOR THE GROUP (A): 53.4073 81.8760 45.7498 REMARK 3 T TENSOR REMARK 3 T11: .0135 T22: .0453 REMARK 3 T33: .0314 T12: .0033 REMARK 3 T13: -.0044 T23: .0288 REMARK 3 L TENSOR REMARK 3 L11: 1.6417 L22: .6623 REMARK 3 L33: .0852 L12: -.9500 REMARK 3 L13: -.0272 L23: -.0377 REMARK 3 S TENSOR REMARK 3 S11: .0058 S12: .1215 S13: .1387 REMARK 3 S21: .0104 S22: -.0089 S23: -.0601 REMARK 3 S31: .0156 S32: -.0291 S33: .0031 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 450 A 462 REMARK 3 ORIGIN FOR THE GROUP (A): 52.1315 63.2909 48.3239 REMARK 3 T TENSOR REMARK 3 T11: .1380 T22: .1486 REMARK 3 T33: .1505 T12: -.0259 REMARK 3 T13: .0219 T23: .0166 REMARK 3 L TENSOR REMARK 3 L11: 3.7117 L22: 3.3037 REMARK 3 L33: 5.4548 L12: 2.2259 REMARK 3 L13: -4.4995 L23: -2.6761 REMARK 3 S TENSOR REMARK 3 S11: -.5621 S12: .2563 S13: -.7096 REMARK 3 S21: -.3233 S22: .1603 S23: .3280 REMARK 3 S31: .7416 S32: .1515 S33: .4018 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 463 A 618 REMARK 3 ORIGIN FOR THE GROUP (A): 75.5957 54.4269 38.4024 REMARK 3 T TENSOR REMARK 3 T11: .0197 T22: .0563 REMARK 3 T33: .0303 T12: -.0015 REMARK 3 T13: .0067 T23: -.0024 REMARK 3 L TENSOR REMARK 3 L11: .1237 L22: .0743 REMARK 3 L33: .1247 L12: -.0341 REMARK 3 L13: .0019 L23: .0895 REMARK 3 S TENSOR REMARK 3 S11: -.0077 S12: .0219 S13: -.0148 REMARK 3 S21: .0173 S22: .0175 S23: -.0131 REMARK 3 S31: -.0178 S32: .0260 S33: -.0099 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3K4K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000055537. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I911-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0379 REMARK 200 MONOCHROMATOR : BENT SI (111) CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 83548 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10000 REMARK 200 FOR THE DATA SET : 18.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 9.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.86000 REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2IGO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES, 50MM MGCL2, 10% (W/V)% REMARK 280 MONOMETHYLETHER PEG 2000, PH 5.2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 51.02950 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 51.02950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 59.84650 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 51.02950 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 51.02950 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 59.84650 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 51.02950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.02950 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 59.84650 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 51.02950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.02950 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 59.84650 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 22900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 81050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -152.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 102.05900 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 102.05900 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 119.69300 REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 102.05900 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 102.05900 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 119.69300 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 THR A 3 REMARK 465 SER A 4 REMARK 465 SER A 5 REMARK 465 SER A 6 REMARK 465 ASP A 7 REMARK 465 PRO A 8 REMARK 465 PHE A 9 REMARK 465 PHE A 10 REMARK 465 ASN A 11 REMARK 465 PHE A 12 REMARK 465 ALA A 13 REMARK 465 LYS A 14 REMARK 465 SER A 15 REMARK 465 SER A 16 REMARK 465 PHE A 17 REMARK 465 ARG A 18 REMARK 465 SER A 19 REMARK 465 ALA A 20 REMARK 465 ALA A 21 REMARK 465 ALA A 22 REMARK 465 GLN A 23 REMARK 465 LYS A 24 REMARK 465 ALA A 25 REMARK 465 SER A 26 REMARK 465 ALA A 27 REMARK 465 SER A 28 REMARK 465 SER A 29 REMARK 465 LEU A 30 REMARK 465 PRO A 31 REMARK 465 PRO A 32 REMARK 465 LEU A 33 REMARK 465 PRO A 34 REMARK 465 GLY A 35 REMARK 465 PRO A 36 REMARK 465 ASP A 37 REMARK 465 LYS A 38 REMARK 465 LYS A 39 REMARK 465 VAL A 40 REMARK 465 PRO A 41 REMARK 465 GLY A 42 REMARK 465 MET A 43 REMARK 465 THR A 619 REMARK 465 SER A 620 REMARK 465 GLU A 621 REMARK 465 ALA A 622 REMARK 465 GLN A 623 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 81 CB - CG - OD1 ANGL. DEV. = -7.1 DEGREES REMARK 500 ASP A 81 CB - CG - OD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 ARG A 139 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 139 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 ASP A 235 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ASP A 470 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ARG A 505 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 81 43.16 -161.79 REMARK 500 ASN A 92 43.06 -89.43 REMARK 500 ASN A 99 55.76 -148.91 REMARK 500 LEU A 152 76.62 -104.26 REMARK 500 ASP A 187 84.07 -165.42 REMARK 500 ALA A 343 8.02 -68.53 REMARK 500 ASN A 344 77.45 -159.20 REMARK 500 HIS A 450 -161.67 -162.54 REMARK 500 LYS A 490 -38.49 -130.71 REMARK 500 PRO A 507 159.09 -47.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 801 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1TT0 RELATED DB: PDB REMARK 900 WILDTYPE PYRANOSE 2-OXIDASE WITH BOUND ACETATE REMARK 900 RELATED ID: 2IGO RELATED DB: PDB REMARK 900 PYRANOSE 2-OXIDASE H167A MUTANT WITH 2FG REMARK 900 RELATED ID: 2IGK RELATED DB: PDB REMARK 900 RECOMBINANT PYRANOSE 2-OXIDASE REMARK 900 RELATED ID: 2IGM RELATED DB: PDB REMARK 900 PYRANOSE 2-OXIDASE H548N MUTANT REMARK 900 RELATED ID: 2IGN RELATED DB: PDB REMARK 900 PYRANOSE 2-OXIDASE H167A MUTANT REMARK 900 RELATED ID: 3BG6 RELATED DB: PDB REMARK 900 PYRANOSE 2-OXIDASE E542K MUTANT DBREF 3K4K A 1 623 UNP Q7ZA32 Q7ZA32_TRAOC 1 623 SEQADV 3K4K ASN A 454 UNP Q7ZA32 PHE 454 ENGINEERED MUTATION SEQRES 1 A 623 MET SER THR SER SER SER ASP PRO PHE PHE ASN PHE ALA SEQRES 2 A 623 LYS SER SER PHE ARG SER ALA ALA ALA GLN LYS ALA SER SEQRES 3 A 623 ALA SER SER LEU PRO PRO LEU PRO GLY PRO ASP LYS LYS SEQRES 4 A 623 VAL PRO GLY MET ASP ILE LYS TYR ASP VAL VAL ILE VAL SEQRES 5 A 623 GLY SER GLY PRO ILE GLY CYS THR TYR ALA ARG GLU LEU SEQRES 6 A 623 VAL GLY ALA GLY TYR LYS VAL ALA MET PHE ASP ILE GLY SEQRES 7 A 623 GLU ILE ASP SER GLY LEU LYS ILE GLY ALA HIS LYS LYS SEQRES 8 A 623 ASN THR VAL GLU TYR GLN LYS ASN ILE ASP LYS PHE VAL SEQRES 9 A 623 ASN VAL ILE GLN GLY GLN LEU MET SER VAL SER VAL PRO SEQRES 10 A 623 VAL ASN THR LEU VAL VAL ASP THR LEU SER PRO THR SER SEQRES 11 A 623 TRP GLN ALA SER THR PHE PHE VAL ARG ASN GLY SER ASN SEQRES 12 A 623 PRO GLU GLN ASP PRO LEU ARG ASN LEU SER GLY GLN ALA SEQRES 13 A 623 VAL THR ARG VAL VAL GLY GLY MET SER THR HIS TRP THR SEQRES 14 A 623 CYS ALA THR PRO ARG PHE ASP ARG GLU GLN ARG PRO LEU SEQRES 15 A 623 LEU VAL LYS ASP ASP ALA ASP ALA ASP ASP ALA GLU TRP SEQRES 16 A 623 ASP ARG LEU TYR THR LYS ALA GLU SER TYR PHE GLN THR SEQRES 17 A 623 GLY THR ASP GLN PHE LYS GLU SER ILE ARG HIS ASN LEU SEQRES 18 A 623 VAL LEU ASN LYS LEU THR GLU GLU TYR LYS GLY GLN ARG SEQRES 19 A 623 ASP PHE GLN GLN ILE PRO LEU ALA ALA THR ARG ARG SER SEQRES 20 A 623 PRO THR PHE VAL GLU TRP SER SER ALA ASN THR VAL PHE SEQRES 21 A 623 ASP LEU GLN ASN ARG PRO ASN THR ASP ALA PRO GLU GLU SEQRES 22 A 623 ARG PHE ASN LEU PHE PRO ALA VAL ALA CYS GLU ARG VAL SEQRES 23 A 623 VAL ARG ASN ALA LEU ASN SER GLU ILE GLU SER LEU HIS SEQRES 24 A 623 ILE HIS ASP LEU ILE SER GLY ASP ARG PHE GLU ILE LYS SEQRES 25 A 623 ALA ASP VAL TYR VAL LEU THR ALA GLY ALA VAL HIS ASN SEQRES 26 A 623 THR GLN LEU LEU VAL ASN SER GLY PHE GLY GLN LEU GLY SEQRES 27 A 623 ARG PRO ASN PRO ALA ASN PRO PRO GLU LEU LEU PRO SER SEQRES 28 A 623 LEU GLY SER TYR ILE THR GLU GLN SER LEU VAL PHE CYS SEQRES 29 A 623 GLN THR VAL MET SER THR GLU LEU ILE ASP SER VAL LYS SEQRES 30 A 623 SER ASP MET THR ILE ARG GLY THR PRO GLY GLU LEU THR SEQRES 31 A 623 TYR SER VAL THR TYR THR PRO GLY ALA SER THR ASN LYS SEQRES 32 A 623 HIS PRO ASP TRP TRP ASN GLU LYS VAL LYS ASN HIS MET SEQRES 33 A 623 MET GLN HIS GLN GLU ASP PRO LEU PRO ILE PRO PHE GLU SEQRES 34 A 623 ASP PRO GLU PRO GLN VAL THR THR LEU PHE GLN PRO SER SEQRES 35 A 623 HIS PRO TRP HIS THR GLN ILE HIS ARG ASP ALA ASN SER SEQRES 36 A 623 TYR GLY ALA VAL GLN GLN SER ILE ASP SER ARG LEU ILE SEQRES 37 A 623 VAL ASP TRP ARG PHE PHE GLY ARG THR GLU PRO LYS GLU SEQRES 38 A 623 GLU ASN LYS LEU TRP PHE SER ASP LYS ILE THR ASP ALA SEQRES 39 A 623 TYR ASN MET PRO GLN PRO THR PHE ASP PHE ARG PHE PRO SEQRES 40 A 623 ALA GLY ARG THR SER LYS GLU ALA GLU ASP MET MET THR SEQRES 41 A 623 ASP MET CYS VAL MET SER ALA LYS ILE GLY GLY PHE LEU SEQRES 42 A 623 PRO GLY SER LEU PRO GLN PHE MET GLU PRO GLY LEU VAL SEQRES 43 A 623 LEU HIS LEU GLY GLY THR HIS ARG MET GLY PHE ASP GLU SEQRES 44 A 623 LYS GLU ASP ASN CYS CYS VAL ASN THR ASP SER ARG VAL SEQRES 45 A 623 PHE GLY PHE LYS ASN LEU PHE LEU GLY GLY CYS GLY ASN SEQRES 46 A 623 ILE PRO THR ALA TYR GLY ALA ASN PRO THR LEU THR ALA SEQRES 47 A 623 MET SER LEU ALA ILE LYS SER CYS GLU TYR ILE LYS GLN SEQRES 48 A 623 ASN PHE THR PRO SER PRO PHE THR SER GLU ALA GLN HET FAD A 801 53 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 HOH *436(H2 O) HELIX 1 1 GLY A 55 ALA A 68 1 14 HELIX 2 2 THR A 93 LYS A 98 1 6 HELIX 3 3 ASN A 99 ASP A 101 5 3 HELIX 4 4 LYS A 102 GLN A 110 1 9 HELIX 5 5 GLY A 162 HIS A 167 5 6 HELIX 6 6 ASP A 176 ARG A 180 5 5 HELIX 7 7 ASP A 187 GLN A 207 1 21 HELIX 8 8 SER A 216 TYR A 230 1 15 HELIX 9 9 SER A 255 PHE A 260 1 6 HELIX 10 10 ALA A 320 ASN A 331 1 12 HELIX 11 11 SER A 369 LYS A 377 1 9 HELIX 12 12 PRO A 405 HIS A 419 1 15 HELIX 13 13 ASP A 464 ARG A 466 5 3 HELIX 14 14 GLY A 509 ALA A 527 1 19 HELIX 15 15 GLY A 582 ILE A 586 5 5 HELIX 16 16 PRO A 594 PHE A 613 1 20 SHEET 1 A 7 ARG A 265 ASN A 267 0 SHEET 2 A 7 ALA A 270 PHE A 278 -1 O PHE A 275 N ARG A 265 SHEET 3 A 7 LYS A 71 PHE A 75 1 N MET A 74 O PHE A 278 SHEET 4 A 7 LYS A 46 VAL A 52 1 N VAL A 49 O ALA A 73 SHEET 5 A 7 ARG A 308 LEU A 318 1 O VAL A 317 N VAL A 50 SHEET 6 A 7 ILE A 295 ASP A 302 -1 N LEU A 298 O ILE A 311 SHEET 7 A 7 VAL A 281 ARG A 288 -1 N VAL A 287 O GLU A 296 SHEET 1 B 6 ARG A 265 ASN A 267 0 SHEET 2 B 6 ALA A 270 PHE A 278 -1 O PHE A 275 N ARG A 265 SHEET 3 B 6 LYS A 71 PHE A 75 1 N MET A 74 O PHE A 278 SHEET 4 B 6 LYS A 46 VAL A 52 1 N VAL A 49 O ALA A 73 SHEET 5 B 6 ARG A 308 LEU A 318 1 O VAL A 317 N VAL A 50 SHEET 6 B 6 LEU A 578 LEU A 580 1 O PHE A 579 N TYR A 316 SHEET 1 C 2 MET A 112 SER A 113 0 SHEET 2 C 2 ALA A 156 VAL A 157 -1 O VAL A 157 N MET A 112 SHEET 1 D 3 THR A 208 GLY A 209 0 SHEET 2 D 3 LEU A 241 SER A 247 -1 O LEU A 241 N GLY A 209 SHEET 3 D 3 PHE A 250 TRP A 253 -1 O GLU A 252 N THR A 244 SHEET 1 E 6 GLN A 237 GLN A 238 0 SHEET 2 E 6 GLN A 434 THR A 436 -1 O THR A 436 N GLN A 237 SHEET 3 E 6 TRP A 445 HIS A 450 -1 O ILE A 449 N VAL A 435 SHEET 4 E 6 ILE A 468 GLY A 475 -1 O ASP A 470 N HIS A 450 SHEET 5 E 6 LEU A 361 MET A 368 -1 N CYS A 364 O TRP A 471 SHEET 6 E 6 GLY A 530 PHE A 532 -1 O GLY A 531 N VAL A 367 SHEET 1 F 6 GLN A 237 GLN A 238 0 SHEET 2 F 6 GLN A 434 THR A 436 -1 O THR A 436 N GLN A 237 SHEET 3 F 6 TRP A 445 HIS A 450 -1 O ILE A 449 N VAL A 435 SHEET 4 F 6 ILE A 468 GLY A 475 -1 O ASP A 470 N HIS A 450 SHEET 5 F 6 LEU A 361 MET A 368 -1 N CYS A 364 O TRP A 471 SHEET 6 F 6 GLN A 539 PHE A 540 -1 O GLN A 539 N PHE A 363 SHEET 1 G 2 THR A 381 ARG A 383 0 SHEET 2 G 2 SER A 392 THR A 394 -1 O THR A 394 N THR A 381 SHEET 1 H 2 LYS A 484 THR A 492 0 SHEET 2 H 2 PRO A 498 ASP A 503 -1 O THR A 501 N TRP A 486 LINK NE2 HIS A 167 C8M FAD A 801 1555 1555 1.67 CISPEP 1 ARG A 265 PRO A 266 0 7.56 SITE 1 AC1 34 VAL A 52 GLY A 53 GLY A 55 PRO A 56 SITE 2 AC1 34 ILE A 57 ASP A 76 ILE A 77 THR A 158 SITE 3 AC1 34 ARG A 159 VAL A 160 GLY A 163 MET A 164 SITE 4 AC1 34 HIS A 167 TRP A 168 THR A 169 CYS A 170 SITE 5 AC1 34 ALA A 171 VAL A 281 CYS A 283 THR A 319 SITE 6 AC1 34 ALA A 320 HIS A 324 LEU A 547 ASN A 593 SITE 7 AC1 34 THR A 595 HOH A1003 HOH A1005 HOH A1020 SITE 8 AC1 34 HOH A1057 HOH A1061 HOH A1066 HOH A1092 SITE 9 AC1 34 HOH A1102 HOH A1124 CRYST1 102.059 102.059 119.693 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009798 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009798 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008355 0.00000