HEADER VIRAL PROTEIN, DNA-BINDING PROTEIN 06-OCT-09 3K4T TITLE CRYSTAL STRUCTURE OF THE VIRION-ASSOCIATED PROTEIN P3 FROM TITLE 2 CAULIMOVIRUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: VIRION-ASSOCIATED PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 1-95; COMPND 5 SYNONYM: VAP, DNA-BINDING PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAULIFLOWER MOSAIC VIRUS (STRAIN STRASBOURG); SOURCE 3 ORGANISM_COMMON: CAMV; SOURCE 4 ORGANISM_TAXID: 10648; SOURCE 5 STRAIN: STRASBOURG; SOURCE 6 GENE: ORF III; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21-DE3; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET-3A KEYWDS COILED-COIL, VIRAL PROTEIN, TETRAMER, DNA-BINDING PROTEIN, PROTEIN KEYWDS 2 BINDING EXPDTA X-RAY DIFFRACTION AUTHOR C.DUMAS,F.HOH REVDAT 4 06-SEP-23 3K4T 1 REMARK REVDAT 3 13-JUL-11 3K4T 1 VERSN REVDAT 2 19-MAY-10 3K4T 1 JRNL REVDAT 1 16-MAR-10 3K4T 0 JRNL AUTH F.HOH,M.UZEST,M.DRUCKER,C.PLISSON-CHASTANG,P.BRON,S.BLANC, JRNL AUTH 2 C.DUMAS JRNL TITL STRUCTURAL INSIGHTS INTO THE MOLECULAR MECHANISMS OF JRNL TITL 2 CAULIFLOWER MOSAIC VIRUS TRANSMISSION BY ITS INSECT VECTOR. JRNL REF J.VIROL. V. 84 4706 2010 JRNL REFN ISSN 0022-538X JRNL PMID 20181714 JRNL DOI 10.1128/JVI.02662-09 REMARK 2 REMARK 2 RESOLUTION. 2.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 8660 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.100 REMARK 3 FREE R VALUE TEST SET COUNT : 657 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.59 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.65 REMARK 3 REFLECTION IN BIN (WORKING SET) : 618 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.11 REMARK 3 BIN R VALUE (WORKING SET) : 0.3070 REMARK 3 BIN FREE R VALUE SET COUNT : 51 REMARK 3 BIN FREE R VALUE : 0.4400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2153 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 29 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 60.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : -0.07000 REMARK 3 B33 (A**2) : 0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.08000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.391 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.311 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 33.250 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2171 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2927 ; 1.255 ; 2.015 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 280 ; 5.391 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 86 ;42.551 ;30.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 468 ;20.609 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 371 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1500 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1414 ; 0.373 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2294 ; 0.722 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 757 ; 1.274 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 633 ; 2.187 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 32 REMARK 3 RESIDUE RANGE : B 3 B 32 REMARK 3 RESIDUE RANGE : C 2 C 32 REMARK 3 RESIDUE RANGE : D 3 D 32 REMARK 3 ORIGIN FOR THE GROUP (A): 44.7070 14.8960 33.4180 REMARK 3 T TENSOR REMARK 3 T11: 0.3462 T22: 0.0963 REMARK 3 T33: 0.3788 T12: -0.0759 REMARK 3 T13: 0.1228 T23: 0.0207 REMARK 3 L TENSOR REMARK 3 L11: 8.0085 L22: 2.9031 REMARK 3 L33: 15.4977 L12: 3.7416 REMARK 3 L13: 9.0064 L23: 6.6741 REMARK 3 S TENSOR REMARK 3 S11: 0.0963 S12: 0.3411 S13: -0.2461 REMARK 3 S21: 0.1280 S22: 0.0537 S23: -0.0297 REMARK 3 S31: 0.4047 S32: 0.0757 S33: -0.1500 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 33 A 40 REMARK 3 RESIDUE RANGE : B 33 B 40 REMARK 3 RESIDUE RANGE : C 33 C 40 REMARK 3 RESIDUE RANGE : D 33 D 40 REMARK 3 ORIGIN FOR THE GROUP (A): 26.6190 6.7800 10.5510 REMARK 3 T TENSOR REMARK 3 T11: 0.9189 T22: 1.1426 REMARK 3 T33: 0.9101 T12: -0.1008 REMARK 3 T13: 0.2440 T23: -0.3757 REMARK 3 L TENSOR REMARK 3 L11: 5.9853 L22: 0.5922 REMARK 3 L33: 14.9008 L12: 1.8632 REMARK 3 L13: 9.4293 L23: 2.9433 REMARK 3 S TENSOR REMARK 3 S11: 0.0348 S12: 1.0522 S13: -0.1775 REMARK 3 S21: 0.0830 S22: 0.2694 S23: 0.0273 REMARK 3 S31: 0.1583 S32: 1.5074 S33: -0.3042 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 41 A 59 REMARK 3 RESIDUE RANGE : B 41 B 59 REMARK 3 RESIDUE RANGE : C 41 C 59 REMARK 3 RESIDUE RANGE : D 41 D 59 REMARK 3 ORIGIN FOR THE GROUP (A): 13.7410 2.5580 -4.2190 REMARK 3 T TENSOR REMARK 3 T11: 0.3387 T22: 0.7070 REMARK 3 T33: 0.4490 T12: -0.1046 REMARK 3 T13: 0.1086 T23: -0.2382 REMARK 3 L TENSOR REMARK 3 L11: 8.6028 L22: 4.1179 REMARK 3 L33: 12.6448 L12: 1.7426 REMARK 3 L13: 6.2067 L23: 2.9202 REMARK 3 S TENSOR REMARK 3 S11: -0.0196 S12: 0.3547 S13: -0.1758 REMARK 3 S21: 0.0944 S22: 0.3656 S23: -0.1087 REMARK 3 S31: -0.0347 S32: 1.1541 S33: -0.3460 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 60 A 71 REMARK 3 RESIDUE RANGE : B 60 B 73 REMARK 3 RESIDUE RANGE : C 60 C 74 REMARK 3 RESIDUE RANGE : D 60 D 70 REMARK 3 ORIGIN FOR THE GROUP (A): -1.8970 -3.2740 -21.2210 REMARK 3 T TENSOR REMARK 3 T11: 0.3262 T22: 0.6189 REMARK 3 T33: 0.5163 T12: -0.0138 REMARK 3 T13: 0.0775 T23: -0.3080 REMARK 3 L TENSOR REMARK 3 L11: 12.6134 L22: 10.9730 REMARK 3 L33: 17.6170 L12: 3.9628 REMARK 3 L13: 10.5499 L23: 3.5073 REMARK 3 S TENSOR REMARK 3 S11: 0.0902 S12: 0.1911 S13: -0.0709 REMARK 3 S21: 0.5813 S22: 0.5375 S23: -0.7238 REMARK 3 S31: -0.1406 S32: 1.6196 S33: -0.6277 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: WEIGHT MATRIX 0.035 REMARK 4 REMARK 4 3K4T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000055546. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979250 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9317 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.590 REMARK 200 RESOLUTION RANGE LOW (A) : 18.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : 0.08400 REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.30200 REMARK 200 R SYM FOR SHELL (I) : 0.34500 REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3F6N REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 31.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 1000, 0.1M MES-NAOH BUFFER, REMARK 280 1.2 MOLAR-EXCESS DNA OLIGONUCLEOTIDE (POLY-AT, 14 BP) , PH 6.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 14.40900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -141.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 72 REMARK 465 GLN A 73 REMARK 465 PRO A 74 REMARK 465 LYS A 75 REMARK 465 GLU A 76 REMARK 465 GLN A 77 REMARK 465 LEU A 78 REMARK 465 ILE A 79 REMARK 465 GLU A 80 REMARK 465 GLN A 81 REMARK 465 PRO A 82 REMARK 465 LYS A 83 REMARK 465 GLU A 84 REMARK 465 LYS A 85 REMARK 465 GLY A 86 REMARK 465 LYS A 87 REMARK 465 GLY A 88 REMARK 465 LEU A 89 REMARK 465 ASN A 90 REMARK 465 LEU A 91 REMARK 465 GLY A 92 REMARK 465 LYS A 93 REMARK 465 TYR A 94 REMARK 465 SER A 95 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 PRO B 74 REMARK 465 LYS B 75 REMARK 465 GLU B 76 REMARK 465 GLN B 77 REMARK 465 LEU B 78 REMARK 465 ILE B 79 REMARK 465 GLU B 80 REMARK 465 GLN B 81 REMARK 465 PRO B 82 REMARK 465 LYS B 83 REMARK 465 GLU B 84 REMARK 465 LYS B 85 REMARK 465 GLY B 86 REMARK 465 LYS B 87 REMARK 465 GLY B 88 REMARK 465 LEU B 89 REMARK 465 ASN B 90 REMARK 465 LEU B 91 REMARK 465 GLY B 92 REMARK 465 LYS B 93 REMARK 465 TYR B 94 REMARK 465 SER B 95 REMARK 465 MET C 1 REMARK 465 LYS C 75 REMARK 465 GLU C 76 REMARK 465 GLN C 77 REMARK 465 LEU C 78 REMARK 465 ILE C 79 REMARK 465 GLU C 80 REMARK 465 GLN C 81 REMARK 465 PRO C 82 REMARK 465 LYS C 83 REMARK 465 GLU C 84 REMARK 465 LYS C 85 REMARK 465 GLY C 86 REMARK 465 LYS C 87 REMARK 465 GLY C 88 REMARK 465 LEU C 89 REMARK 465 ASN C 90 REMARK 465 LEU C 91 REMARK 465 GLY C 92 REMARK 465 LYS C 93 REMARK 465 TYR C 94 REMARK 465 SER C 95 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 GLY D 71 REMARK 465 THR D 72 REMARK 465 GLN D 73 REMARK 465 PRO D 74 REMARK 465 LYS D 75 REMARK 465 GLU D 76 REMARK 465 GLN D 77 REMARK 465 LEU D 78 REMARK 465 ILE D 79 REMARK 465 GLU D 80 REMARK 465 GLN D 81 REMARK 465 PRO D 82 REMARK 465 LYS D 83 REMARK 465 GLU D 84 REMARK 465 LYS D 85 REMARK 465 GLY D 86 REMARK 465 LYS D 87 REMARK 465 GLY D 88 REMARK 465 LEU D 89 REMARK 465 ASN D 90 REMARK 465 LEU D 91 REMARK 465 GLY D 92 REMARK 465 LYS D 93 REMARK 465 TYR D 94 REMARK 465 SER D 95 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N ASN B 3 O HOH B 109 2.13 REMARK 500 O LEU B 67 OG1 THR B 72 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO B 37 150.29 -48.88 REMARK 500 CYS B 60 70.21 40.22 REMARK 500 PRO C 37 126.63 -31.77 REMARK 500 CYS C 60 70.21 54.84 REMARK 500 PRO D 37 137.62 -33.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3F6N RELATED DB: PDB REMARK 900 THE SAME PROTEIN, P64 CRYSTAL FORM DBREF 3K4T A 1 95 UNP P03551 VDBP_CAMVS 1 95 DBREF 3K4T B 1 95 UNP P03551 VDBP_CAMVS 1 95 DBREF 3K4T C 1 95 UNP P03551 VDBP_CAMVS 1 95 DBREF 3K4T D 1 95 UNP P03551 VDBP_CAMVS 1 95 SEQRES 1 A 95 MET ALA ASN LEU ASN GLN ILE GLN LYS GLU VAL SER GLU SEQRES 2 A 95 ILE LEU SER ASP GLN LYS SER MET LYS ALA ASP ILE LYS SEQRES 3 A 95 ALA ILE LEU GLU LEU LEU GLY SER GLN ASN PRO ILE LYS SEQRES 4 A 95 GLU SER LEU GLU THR VAL ALA ALA LYS ILE VAL ASN ASP SEQRES 5 A 95 LEU THR LYS LEU ILE ASN ASP CYS PRO CYS ASN LYS GLU SEQRES 6 A 95 ILE LEU GLU ALA LEU GLY THR GLN PRO LYS GLU GLN LEU SEQRES 7 A 95 ILE GLU GLN PRO LYS GLU LYS GLY LYS GLY LEU ASN LEU SEQRES 8 A 95 GLY LYS TYR SER SEQRES 1 B 95 MET ALA ASN LEU ASN GLN ILE GLN LYS GLU VAL SER GLU SEQRES 2 B 95 ILE LEU SER ASP GLN LYS SER MET LYS ALA ASP ILE LYS SEQRES 3 B 95 ALA ILE LEU GLU LEU LEU GLY SER GLN ASN PRO ILE LYS SEQRES 4 B 95 GLU SER LEU GLU THR VAL ALA ALA LYS ILE VAL ASN ASP SEQRES 5 B 95 LEU THR LYS LEU ILE ASN ASP CYS PRO CYS ASN LYS GLU SEQRES 6 B 95 ILE LEU GLU ALA LEU GLY THR GLN PRO LYS GLU GLN LEU SEQRES 7 B 95 ILE GLU GLN PRO LYS GLU LYS GLY LYS GLY LEU ASN LEU SEQRES 8 B 95 GLY LYS TYR SER SEQRES 1 C 95 MET ALA ASN LEU ASN GLN ILE GLN LYS GLU VAL SER GLU SEQRES 2 C 95 ILE LEU SER ASP GLN LYS SER MET LYS ALA ASP ILE LYS SEQRES 3 C 95 ALA ILE LEU GLU LEU LEU GLY SER GLN ASN PRO ILE LYS SEQRES 4 C 95 GLU SER LEU GLU THR VAL ALA ALA LYS ILE VAL ASN ASP SEQRES 5 C 95 LEU THR LYS LEU ILE ASN ASP CYS PRO CYS ASN LYS GLU SEQRES 6 C 95 ILE LEU GLU ALA LEU GLY THR GLN PRO LYS GLU GLN LEU SEQRES 7 C 95 ILE GLU GLN PRO LYS GLU LYS GLY LYS GLY LEU ASN LEU SEQRES 8 C 95 GLY LYS TYR SER SEQRES 1 D 95 MET ALA ASN LEU ASN GLN ILE GLN LYS GLU VAL SER GLU SEQRES 2 D 95 ILE LEU SER ASP GLN LYS SER MET LYS ALA ASP ILE LYS SEQRES 3 D 95 ALA ILE LEU GLU LEU LEU GLY SER GLN ASN PRO ILE LYS SEQRES 4 D 95 GLU SER LEU GLU THR VAL ALA ALA LYS ILE VAL ASN ASP SEQRES 5 D 95 LEU THR LYS LEU ILE ASN ASP CYS PRO CYS ASN LYS GLU SEQRES 6 D 95 ILE LEU GLU ALA LEU GLY THR GLN PRO LYS GLU GLN LEU SEQRES 7 D 95 ILE GLU GLN PRO LYS GLU LYS GLY LYS GLY LEU ASN LEU SEQRES 8 D 95 GLY LYS TYR SER HET CL A 100 1 HETNAM CL CHLORIDE ION FORMUL 5 CL CL 1- FORMUL 6 HOH *29(H2 O) HELIX 1 1 ALA A 2 GLY A 33 1 32 HELIX 2 2 PRO A 37 CYS A 60 1 24 HELIX 3 3 CYS A 62 GLY A 71 1 10 HELIX 4 4 ASN B 3 SER B 34 1 32 HELIX 5 5 PRO B 37 ASP B 59 1 23 HELIX 6 6 CYS B 62 GLY B 71 1 10 HELIX 7 7 ASN C 3 GLY C 33 1 31 HELIX 8 8 PRO C 37 ASN C 58 1 22 HELIX 9 9 ASP C 59 PRO C 61 5 3 HELIX 10 10 CYS C 62 LEU C 70 1 9 HELIX 11 11 ASN D 3 GLN D 35 1 33 HELIX 12 12 PRO D 37 CYS D 60 1 24 HELIX 13 13 CYS D 62 GLU D 68 1 7 SSBOND 1 CYS A 60 CYS D 62 1555 1555 2.05 SSBOND 2 CYS A 62 CYS C 60 1555 1555 2.04 SSBOND 3 CYS B 60 CYS C 62 1555 1555 2.04 SSBOND 4 CYS B 62 CYS D 60 1555 1555 2.04 CRYST1 69.302 28.818 75.957 90.00 92.08 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014430 0.000000 0.000524 0.00000 SCALE2 0.000000 0.034701 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013174 0.00000