HEADER SUGAR BINDING PROTEIN 06-OCT-09 3K4Z TITLE CRYSTAL STRUCTURE OF THE CELLULOSOMAL CBM4 FROM CLOSTRIDIUM TITLE 2 THERMOCELLUM CELLULASE CBHA COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOSIDE HYDROLASE FAMILY 9; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 28-307; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM THERMOCELLUM DSM 4150; SOURCE 3 ORGANISM_TAXID: 492476; SOURCE 4 GENE: CTHERDRAFT_1062; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS CELLULASE, CBHA, CLOSTRIDIUM THERMOCELLUM, CBM4, IG-LIKE, KEYWDS 2 CELLULOSOME, CBM, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.M.ALAHUHTA,Q.XU,M.E.HIMMEL,V.V.LUNIN REVDAT 6 06-SEP-23 3K4Z 1 HETSYN REVDAT 5 29-JUL-20 3K4Z 1 COMPND REMARK SEQADV HET REVDAT 5 2 1 HETNAM FORMUL LINK SITE REVDAT 5 3 1 ATOM REVDAT 4 01-NOV-17 3K4Z 1 REMARK REVDAT 3 27-OCT-10 3K4Z 1 HEADER KEYWDS REVDAT 2 06-OCT-10 3K4Z 1 JRNL REVDAT 1 28-JUL-10 3K4Z 0 JRNL AUTH M.ALAHUHTA,Q.XU,Y.J.BOMBLE,R.BRUNECKY,W.S.ADNEY,S.Y.DING, JRNL AUTH 2 M.E.HIMMEL,V.V.LUNIN JRNL TITL THE UNIQUE BINDING MODE OF CELLULOSOMAL CBM4 FROM JRNL TITL 2 CLOSTRIDIUM THERMOCELLUM CELLOBIOHYDROLASE A. JRNL REF J.MOL.BIOL. V. 402 374 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 20654622 JRNL DOI 10.1016/J.JMB.2010.07.028 REMARK 2 REMARK 2 RESOLUTION. 2.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0100 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 18089 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 978 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.11 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1300 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.01 REMARK 3 BIN R VALUE (WORKING SET) : 0.1920 REMARK 3 BIN FREE R VALUE SET COUNT : 76 REMARK 3 BIN FREE R VALUE : 0.2730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2210 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 271 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.24000 REMARK 3 B33 (A**2) : -0.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.202 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.183 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.115 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.485 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2414 ; 0.021 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1599 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3312 ; 1.790 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3910 ; 0.927 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 293 ; 7.218 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 114 ;37.787 ;24.737 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 376 ;14.526 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;19.350 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 358 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2697 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 481 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1430 ; 0.949 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 568 ; 0.296 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2342 ; 1.564 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 984 ; 2.699 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 969 ; 3.913 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 86 REMARK 3 ORIGIN FOR THE GROUP (A): 14.6000 13.8250 44.0530 REMARK 3 T TENSOR REMARK 3 T11: 0.0329 T22: 0.0356 REMARK 3 T33: 0.0414 T12: 0.0153 REMARK 3 T13: -0.0020 T23: -0.0055 REMARK 3 L TENSOR REMARK 3 L11: 0.5382 L22: 0.6665 REMARK 3 L33: 0.4280 L12: 0.4562 REMARK 3 L13: -0.0853 L23: -0.0552 REMARK 3 S TENSOR REMARK 3 S11: -0.0274 S12: 0.0474 S13: 0.0122 REMARK 3 S21: -0.0749 S22: 0.0078 S23: -0.0152 REMARK 3 S31: 0.0047 S32: 0.0248 S33: 0.0197 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 87 A 217 REMARK 3 ORIGIN FOR THE GROUP (A): 14.8430 17.7950 40.2170 REMARK 3 T TENSOR REMARK 3 T11: 0.0349 T22: 0.0379 REMARK 3 T33: 0.0374 T12: 0.0045 REMARK 3 T13: -0.0005 T23: 0.0023 REMARK 3 L TENSOR REMARK 3 L11: 0.1147 L22: 0.1482 REMARK 3 L33: 0.4494 L12: 0.0718 REMARK 3 L13: 0.1068 L23: 0.0122 REMARK 3 S TENSOR REMARK 3 S11: -0.0119 S12: 0.0564 S13: 0.0157 REMARK 3 S21: -0.0307 S22: 0.0181 S23: -0.0298 REMARK 3 S31: -0.0017 S32: 0.0896 S33: -0.0063 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 218 A 281 REMARK 3 ORIGIN FOR THE GROUP (A): 15.6650 5.7480 16.5390 REMARK 3 T TENSOR REMARK 3 T11: 0.0333 T22: 0.0466 REMARK 3 T33: 0.0198 T12: -0.0073 REMARK 3 T13: -0.0196 T23: -0.0044 REMARK 3 L TENSOR REMARK 3 L11: 2.0668 L22: 2.0815 REMARK 3 L33: 1.8149 L12: -0.6405 REMARK 3 L13: -0.1809 L23: 0.1235 REMARK 3 S TENSOR REMARK 3 S11: 0.0055 S12: 0.0145 S13: 0.0581 REMARK 3 S21: 0.0814 S22: -0.0368 S23: -0.1404 REMARK 3 S31: -0.0417 S32: 0.1036 S33: 0.0313 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3K4Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000055552. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : HELIOS MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER PLATINUM 135 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : BRUKER SUITE V. 2008.1-0 REMARK 200 DATA SCALING SOFTWARE : BRUKER SUITE V. 2008.1-0 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19105 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.110 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09910 REMARK 200 FOR THE DATA SET : 10.8300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.11 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.84 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.41930 REMARK 200 FOR SHELL : 2.510 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MRBUMP REMARK 200 STARTING MODEL: PDB ENTRIES 1RQ5 AND 1GU3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 4000, 0.2 M MAGNESIUM CHLORIDE REMARK 280 HEXAHYDRATE, TRIS HYDROCHLORIDE, PH 8.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.74350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.74350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 30.28900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.15750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 30.28900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.15750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 56.74350 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 30.28900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 47.15750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 56.74350 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 30.28900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 47.15750 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 236 REMARK 465 LYS A 237 REMARK 465 ASP A 238 REMARK 465 SER A 239 REMARK 465 GLN A 240 REMARK 465 ILE A 281 REMARK 465 LEU A 282 REMARK 465 GLU A 283 REMARK 465 HIS A 284 REMARK 465 HIS A 285 REMARK 465 HIS A 286 REMARK 465 HIS A 287 REMARK 465 HIS A 288 REMARK 465 HIS A 289 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O4 BGC B 2 O HOH A 494 2.11 REMARK 500 OD1 ASP A 43 O HOH A 346 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 163 CB VAL A 163 CG2 0.137 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 36 55.54 39.05 REMARK 500 ASN A 115 31.68 -162.38 REMARK 500 VAL A 193 -60.46 -93.24 REMARK 500 ASN A 270 47.91 -85.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 291 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 19 OE1 REMARK 620 2 HOH A 315 O 92.4 REMARK 620 3 HOH A 377 O 83.8 95.7 REMARK 620 4 HOH A 400 O 93.7 173.3 82.4 REMARK 620 5 HOH A 401 O 99.1 87.0 176.0 94.6 REMARK 620 6 HOH A 406 O 170.0 85.8 86.6 87.7 90.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 290 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 21 O REMARK 620 2 ASP A 23 OD1 84.3 REMARK 620 3 ASN A 53 OD1 163.9 86.5 REMARK 620 4 LYS A 54 O 89.1 95.0 78.5 REMARK 620 5 ASP A 166 OD1 87.8 169.6 102.7 91.5 REMARK 620 6 HOH A 317 O 96.1 86.2 96.5 174.8 88.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 292 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 83 NE2 REMARK 620 2 HOH A 524 O 101.3 REMARK 620 3 HOH A 525 O 85.7 130.2 REMARK 620 4 HOH A 526 O 154.6 104.0 76.2 REMARK 620 N 1 2 3 DBREF 3K4Z A 2 281 UNP B4BCE7 B4BCE7_CLOTM 28 307 SEQADV 3K4Z MET A 1 UNP B4BCE7 EXPRESSION TAG SEQADV 3K4Z LEU A 282 UNP B4BCE7 EXPRESSION TAG SEQADV 3K4Z GLU A 283 UNP B4BCE7 EXPRESSION TAG SEQADV 3K4Z HIS A 284 UNP B4BCE7 EXPRESSION TAG SEQADV 3K4Z HIS A 285 UNP B4BCE7 EXPRESSION TAG SEQADV 3K4Z HIS A 286 UNP B4BCE7 EXPRESSION TAG SEQADV 3K4Z HIS A 287 UNP B4BCE7 EXPRESSION TAG SEQADV 3K4Z HIS A 288 UNP B4BCE7 EXPRESSION TAG SEQADV 3K4Z HIS A 289 UNP B4BCE7 EXPRESSION TAG SEQRES 1 A 289 MET LEU GLU ASP ASN SER SER THR LEU PRO PRO TYR LYS SEQRES 2 A 289 ASN ASP LEU LEU TYR GLU ARG THR PHE ASP GLU GLY LEU SEQRES 3 A 289 CYS TYR PRO TRP HIS THR CYS GLU ASP SER GLY GLY LYS SEQRES 4 A 289 CYS SER PHE ASP VAL VAL ASP VAL PRO GLY GLN PRO GLY SEQRES 5 A 289 ASN LYS ALA PHE ALA VAL THR VAL LEU ASP LYS GLY GLN SEQRES 6 A 289 ASN ARG TRP SER VAL GLN MET ARG HIS ARG GLY LEU THR SEQRES 7 A 289 LEU GLU GLN GLY HIS THR TYR ARG VAL ARG LEU LYS ILE SEQRES 8 A 289 TRP ALA ASP ALA SER CYS LYS VAL TYR ILE LYS ILE GLY SEQRES 9 A 289 GLN MET GLY GLU PRO TYR ALA GLU TYR TRP ASN ASN LYS SEQRES 10 A 289 TRP SER PRO TYR THR LEU THR ALA GLY LYS VAL LEU GLU SEQRES 11 A 289 ILE ASP GLU THR PHE VAL MET ASP LYS PRO THR ASP ASP SEQRES 12 A 289 THR CYS GLU PHE THR PHE HIS LEU GLY GLY GLU LEU ALA SEQRES 13 A 289 ALA THR PRO PRO TYR THR VAL TYR LEU ASP ASP VAL SER SEQRES 14 A 289 LEU TYR ASP PRO GLU TYR THR LYS PRO VAL GLU TYR ILE SEQRES 15 A 289 LEU PRO GLN PRO ASP VAL ARG VAL ASN GLN VAL GLY TYR SEQRES 16 A 289 LEU PRO GLU GLY LYS LYS VAL ALA THR VAL VAL CYS ASN SEQRES 17 A 289 SER THR GLN PRO VAL LYS TRP GLN LEU LYS ASN ALA ALA SEQRES 18 A 289 GLY VAL VAL VAL LEU GLU GLY TYR THR GLU PRO LYS GLY SEQRES 19 A 289 LEU ASP LYS ASP SER GLN ASP TYR VAL HIS TRP LEU ASP SEQRES 20 A 289 PHE SER ASP PHE ALA THR GLU GLY ILE GLY TYR TYR PHE SEQRES 21 A 289 GLU LEU PRO THR VAL ASN SER PRO THR ASN TYR SER HIS SEQRES 22 A 289 PRO PHE ASP ILE ARG LYS ASP ILE LEU GLU HIS HIS HIS SEQRES 23 A 289 HIS HIS HIS HET BGC B 1 12 HET BGC B 2 11 HET MG A 290 1 HET MG A 291 1 HET NI A 292 1 HET OXL A 293 6 HET XGP A 295 16 HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM MG MAGNESIUM ION HETNAM NI NICKEL (II) ION HETNAM OXL OXALATE ION HETNAM XGP 1-O-PHOSPHONO-BETA-D-GLUCOPYRANOSE HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN XGP 1-O-PHOSPHONO-BETA-D-GLUCOSE; 1-O-PHOSPHONO-D-GLUCOSE; HETSYN 2 XGP 1-O-PHOSPHONO-GLUCOSE FORMUL 2 BGC 2(C6 H12 O6) FORMUL 3 MG 2(MG 2+) FORMUL 5 NI NI 2+ FORMUL 6 OXL C2 O4 2- FORMUL 7 XGP C6 H13 O9 P FORMUL 8 HOH *271(H2 O) HELIX 1 1 PRO A 11 ASP A 15 5 5 HELIX 2 2 ASN A 66 TRP A 68 5 3 HELIX 3 3 GLY A 152 ALA A 156 5 5 SHEET 1 A 5 HIS A 31 GLU A 34 0 SHEET 2 A 5 VAL A 70 LEU A 79 -1 O ARG A 73 N HIS A 31 SHEET 3 A 5 ASP A 142 HIS A 150 -1 O CYS A 145 N LEU A 77 SHEET 4 A 5 CYS A 97 GLN A 105 -1 N TYR A 100 O HIS A 150 SHEET 5 A 5 GLU A 112 TRP A 114 -1 O TYR A 113 N ILE A 103 SHEET 1 B 5 HIS A 31 GLU A 34 0 SHEET 2 B 5 VAL A 70 LEU A 79 -1 O ARG A 73 N HIS A 31 SHEET 3 B 5 ASP A 142 HIS A 150 -1 O CYS A 145 N LEU A 77 SHEET 4 B 5 CYS A 97 GLN A 105 -1 N TYR A 100 O HIS A 150 SHEET 5 B 5 TYR A 121 LEU A 123 -1 O TYR A 121 N VAL A 99 SHEET 1 C 5 GLY A 38 ASP A 46 0 SHEET 2 C 5 LYS A 54 LYS A 63 -1 O ALA A 57 N ASP A 43 SHEET 3 C 5 TYR A 161 TYR A 171 -1 O VAL A 163 N VAL A 58 SHEET 4 C 5 THR A 84 ALA A 93 -1 N ARG A 88 O SER A 169 SHEET 5 C 5 LEU A 129 VAL A 136 -1 O GLU A 133 N VAL A 87 SHEET 1 D 4 VAL A 188 ARG A 189 0 SHEET 2 D 4 VAL A 202 CYS A 207 -1 O THR A 204 N ARG A 189 SHEET 3 D 4 TYR A 242 ASP A 247 -1 O HIS A 244 N VAL A 205 SHEET 4 D 4 GLU A 231 GLY A 234 -1 N GLU A 231 O TRP A 245 SHEET 1 E 5 GLY A 194 TYR A 195 0 SHEET 2 E 5 PHE A 275 ILE A 277 1 O ASP A 276 N TYR A 195 SHEET 3 E 5 GLY A 255 GLU A 261 -1 N GLY A 255 O ILE A 277 SHEET 4 E 5 LYS A 214 LYS A 218 -1 N LYS A 218 O TYR A 259 SHEET 5 E 5 VAL A 224 TYR A 229 -1 O VAL A 225 N LEU A 217 LINK O4 ABGC B 1 C1 ABGC B 2 1555 1555 1.39 LINK OE1 GLU A 19 MG MG A 291 1555 1555 2.08 LINK O THR A 21 MG MG A 290 1555 1555 2.04 LINK OD1 ASP A 23 MG MG A 290 1555 1555 2.17 LINK OD1 ASN A 53 MG MG A 290 1555 1555 2.08 LINK O LYS A 54 MG MG A 290 1555 1555 2.13 LINK NE2 HIS A 83 NI NI A 292 1555 1555 2.21 LINK OD1 ASP A 166 MG MG A 290 1555 1555 2.10 LINK MG MG A 290 O HOH A 317 1555 1555 2.06 LINK MG MG A 291 O HOH A 315 1555 1555 1.98 LINK MG MG A 291 O HOH A 377 1555 1555 1.97 LINK MG MG A 291 O HOH A 400 1555 1555 2.19 LINK MG MG A 291 O HOH A 401 1555 1555 2.03 LINK MG MG A 291 O HOH A 406 1555 1555 2.14 LINK NI NI A 292 O HOH A 524 1555 1555 2.58 LINK NI NI A 292 O HOH A 525 1555 1555 2.28 LINK NI NI A 292 O HOH A 526 1555 1555 2.24 CISPEP 1 TYR A 28 PRO A 29 0 8.02 CISPEP 2 GLU A 108 PRO A 109 0 4.10 CISPEP 3 PRO A 159 PRO A 160 0 2.57 CRYST1 60.578 94.315 113.487 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016508 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010603 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008812 0.00000