HEADER HYDROLASE 06-OCT-09 3K50 TITLE CRYSTAL STRUCTURE OF PUTATIVE S41 PROTEASE (YP_211611.1) FROM TITLE 2 BACTEROIDES FRAGILIS NCTC 9343 AT 2.00 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE S41 PROTEASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 24-425; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES FRAGILIS NCTC 9343; SOURCE 3 ORGANISM_TAXID: 272559; SOURCE 4 STRAIN: ATCC 25285 / NCTC 9343; SOURCE 5 GENE: BF1979; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PUTATIVE S41 PROTEASE, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, KEYWDS 3 UNKNOWN FUNCTION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 06-NOV-24 3K50 1 REMARK REVDAT 5 01-FEB-23 3K50 1 REMARK SEQADV REVDAT 4 17-JUL-19 3K50 1 REMARK LINK REVDAT 3 25-OCT-17 3K50 1 REMARK REVDAT 2 13-JUL-11 3K50 1 VERSN REVDAT 1 13-OCT-09 3K50 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE S41 PROTEASE (YP_211611.1) JRNL TITL 2 FROM BACTEROIDES FRAGILIS NCTC 9343 AT 2.00 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 28503 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1442 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.01 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1922 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.26 REMARK 3 BIN R VALUE (WORKING SET) : 0.2090 REMARK 3 BIN FREE R VALUE SET COUNT : 104 REMARK 3 BIN FREE R VALUE : 0.2510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3035 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 317 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 25.48 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.07000 REMARK 3 B22 (A**2) : -1.86000 REMARK 3 B33 (A**2) : 1.94000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.163 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.149 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.107 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.462 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3198 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2109 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4363 ; 1.794 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5153 ; 1.080 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 402 ; 4.864 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 142 ;35.479 ;24.437 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 506 ;12.264 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;12.981 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 482 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3605 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 649 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 592 ; 0.226 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2170 ; 0.184 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1546 ; 0.186 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): 1591 ; 0.090 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 372 ; 0.188 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 18 ; 0.190 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 63 ; 0.205 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 26 ; 0.204 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2051 ; 2.397 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 798 ; 0.684 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3222 ; 3.260 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1343 ; 5.288 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1141 ; 6.987 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 27 A 424 REMARK 3 ORIGIN FOR THE GROUP (A): 4.8455 25.6464 20.3174 REMARK 3 T TENSOR REMARK 3 T11: -0.0437 T22: -0.0200 REMARK 3 T33: -0.0523 T12: 0.0097 REMARK 3 T13: -0.0115 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 0.3767 L22: 0.7538 REMARK 3 L33: 0.7767 L12: 0.0040 REMARK 3 L13: -0.2258 L23: -0.2305 REMARK 3 S TENSOR REMARK 3 S11: 0.0005 S12: -0.0653 S13: 0.0412 REMARK 3 S21: 0.1397 S22: 0.0195 S23: 0.0149 REMARK 3 S31: -0.1197 S32: -0.0033 S33: -0.0200 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1.HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2.ATOM RECORDS CONTAIN RESIDUAL B FACTORS REMARK 3 ONLY. 3.A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE REMARK 3 ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REMARK 3 REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. REMARK 3 4.CHLORIDE ION AND GLYCEROL MOLECULES FROM CRYSTALLIZATION AND REMARK 3 CRYOPROTECTANT ARE MODELED IN THE STRUCTURE, RESPECTIVELY. REMARK 4 REMARK 4 3K50 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000055553. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97936 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28549 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 29.311 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.590 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.54800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0000M LICL, 20.0000% PEG-6000, 0.1M REMARK 280 MES PH 6.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.13700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.56300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.71750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.56300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.13700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.71750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC REMARK 300 LIGHT SCATTERING SUPPORTS THE ASSIGNMENT OF A MONOMER AS A REMARK 300 SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 GLY A 24 REMARK 465 VAL A 25 REMARK 465 ASP A 26 REMARK 465 GLU A 34 REMARK 465 THR A 35 REMARK 465 GLY A 36 REMARK 465 ARG A 37 REMARK 465 GLY A 170 REMARK 465 GLU A 171 REMARK 465 ASP A 172 REMARK 465 GLY A 173 REMARK 465 GLU A 174 REMARK 465 LYS A 425 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 27 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 30 OE1 OE2 REMARK 470 ASP A 38 CG OD1 OD2 REMARK 470 LYS A 72 CE NZ REMARK 470 LYS A 73 CD CE NZ REMARK 470 LEU A 106 CG CD1 CD2 REMARK 470 ASP A 107 CG OD1 OD2 REMARK 470 ASN A 108 CG OD1 ND2 REMARK 470 ASP A 109 CG OD1 OD2 REMARK 470 THR A 110 OG1 CG2 REMARK 470 LYS A 147 CD CE NZ REMARK 470 LYS A 166 CD CE NZ REMARK 470 LYS A 196 CE NZ REMARK 470 LYS A 210 NZ REMARK 470 THR A 225 OG1 CG2 REMARK 470 ASP A 226 CG OD1 OD2 REMARK 470 ASP A 424 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 191 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 191 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG A 236 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ASP A 296 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 106 102.80 -51.40 REMARK 500 ASN A 278 -2.28 80.71 REMARK 500 GLN A 305 -123.25 48.97 REMARK 500 SER A 380 45.66 -152.10 REMARK 500 SER A 380 47.90 -152.10 REMARK 500 THR A 384 -5.38 75.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 393183 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. THE CLONED REMARK 999 CONSTRUCT CONTAINS RESIDUES 24-425 OF THE FULL LENGTH PROTEIN. DBREF 3K50 A 24 425 UNP Q5LDX8 Q5LDX8_BACFN 24 425 SEQADV 3K50 GLY A 0 UNP Q5LDX8 EXPRESSION TAG SEQRES 1 A 403 GLY GLY VAL ASP ARG TRP PRO GLU TYR TYR PRO GLU THR SEQRES 2 A 403 GLY ARG ASP ILE TRP ILE ASP SER VAL MSE ARG GLN GLU SEQRES 3 A 403 TYR LEU TRP TYR ARG ASP MSE PRO SER PRO ALA ALA PRO SEQRES 4 A 403 ASP TYR PHE GLN LYS PRO GLU ALA PHE LEU LYS LYS ALA SEQRES 5 A 403 VAL ALA SER MSE ASP ASN GLY PHE SER LYS ILE ASP SER SEQRES 6 A 403 LEU LEU ASP GLU PRO ILE PRO SER TYR GLY PHE ASP TYR SEQRES 7 A 403 THR LEU TYR LYS VAL LEU ASP ASN ASP THR ALA TYR ASN SEQRES 8 A 403 ALA LEU ILE SER TYR VAL VAL PRO GLY SER PRO ALA GLU SEQRES 9 A 403 GLU ALA GLY LEU GLN ARG GLY HIS TRP ILE MSE MSE MSE SEQRES 10 A 403 ASN GLY ASP TYR ILE THR LYS LYS VAL GLU SER GLU LEU SEQRES 11 A 403 LEU GLN GLY SER THR ARG GLN LEU GLN ILE GLY VAL TYR SEQRES 12 A 403 LYS GLU VAL VAL GLY GLU ASP GLY GLU VAL THR GLY GLY SEQRES 13 A 403 VAL VAL PRO ILE GLY GLU THR THR MSE PRO ALA SER ARG SEQRES 14 A 403 SER LEU VAL ASP LYS PRO VAL HIS ARG PHE GLU ILE ILE SEQRES 15 A 403 PRO TRP ASN GLY LYS LYS VAL GLY TYR LEU MSE TYR ASN SEQRES 16 A 403 GLU PHE LYS ALA GLY PRO THR THR ASP SER GLN ALA TYR SEQRES 17 A 403 ASN ASP ASP LEU ARG ARG ALA PHE ARG ASP PHE GLN THR SEQRES 18 A 403 GLY GLY VAL ASN GLU PHE VAL LEU ASP LEU ARG TYR ASN SEQRES 19 A 403 THR GLY GLY SER LEU ASP CYS ALA GLN LEU LEU CYS THR SEQRES 20 A 403 MSE LEU ALA PRO ALA ASP LYS MSE ASN GLN LEU LEU ALA SEQRES 21 A 403 LEU LEU ARG TYR SER ASP LYS ARG VAL GLU ALA ASN GLN SEQRES 22 A 403 ASP LEU THR PHE ASN PRO GLU LEU ILE GLN SER GLY ALA SEQRES 23 A 403 ASN LEU ASN LEU SER THR VAL TYR VAL LEU THR THR ASN SEQRES 24 A 403 ALA THR ARG GLY ALA ALA GLU MSE VAL ILE ASN CYS LEU SEQRES 25 A 403 ASN PRO TYR MSE LYS VAL VAL LEU ILE GLY THR LYS THR SEQRES 26 A 403 ALA GLY GLU TYR VAL ALA THR LYS PRO PHE VAL HIS PRO SEQRES 27 A 403 THR ASP ARG PHE ILE LEU ASN LEU VAL VAL CYS ASN VAL SEQRES 28 A 403 TYR ASN ALA GLU GLU LYS SER ASP TYR ALA THR GLY PHE SEQRES 29 A 403 LYS PRO THR TYR GLU TYR ASN GLU ASP SER TYR LEU SER SEQRES 30 A 403 THR TYR LEU PRO PHE GLY ASN THR ASN GLU THR LEU LEU SEQRES 31 A 403 ASN ALA ALA LEU LYS ILE MSE SER GLY ILE THR ASP LYS MODRES 3K50 MSE A 45 MET SELENOMETHIONINE MODRES 3K50 MSE A 55 MET SELENOMETHIONINE MODRES 3K50 MSE A 78 MET SELENOMETHIONINE MODRES 3K50 MSE A 137 MET SELENOMETHIONINE MODRES 3K50 MSE A 138 MET SELENOMETHIONINE MODRES 3K50 MSE A 139 MET SELENOMETHIONINE MODRES 3K50 MSE A 187 MET SELENOMETHIONINE MODRES 3K50 MSE A 215 MET SELENOMETHIONINE MODRES 3K50 MSE A 270 MET SELENOMETHIONINE MODRES 3K50 MSE A 277 MET SELENOMETHIONINE MODRES 3K50 MSE A 329 MET SELENOMETHIONINE MODRES 3K50 MSE A 338 MET SELENOMETHIONINE MODRES 3K50 MSE A 419 MET SELENOMETHIONINE HET MSE A 45 8 HET MSE A 55 8 HET MSE A 78 8 HET MSE A 137 8 HET MSE A 138 8 HET MSE A 139 8 HET MSE A 187 8 HET MSE A 215 8 HET MSE A 270 8 HET MSE A 277 8 HET MSE A 329 8 HET MSE A 338 8 HET MSE A 419 8 HET CL A 1 1 HET GOL A 2 6 HET GOL A 3 6 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 13(C5 H11 N O2 SE) FORMUL 2 CL CL 1- FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 HOH *317(H2 O) HELIX 1 1 ILE A 39 TYR A 49 1 11 HELIX 2 2 TRP A 51 MSE A 55 5 5 HELIX 3 3 LYS A 66 VAL A 75 1 10 HELIX 4 4 SER A 123 ALA A 128 1 6 HELIX 5 5 VAL A 148 LEU A 153 5 6 HELIX 6 6 GLN A 228 GLY A 244 1 17 HELIX 7 7 SER A 260 ALA A 272 1 13 HELIX 8 8 PRO A 273 MSE A 277 5 5 HELIX 9 9 ARG A 290 ASN A 294 5 5 HELIX 10 10 ASN A 300 ILE A 304 5 5 HELIX 11 11 GLY A 325 ASN A 335 1 11 HELIX 12 12 ASN A 393 TYR A 401 5 9 HELIX 13 13 GLU A 409 SER A 420 1 12 SHEET 1 A 4 LYS A 84 SER A 87 0 SHEET 2 A 4 PHE A 364 TYR A 374 -1 O ILE A 365 N ASP A 86 SHEET 3 A 4 LEU A 280 ARG A 285 -1 N ARG A 285 O ASN A 372 SHEET 4 A 4 GLN A 295 THR A 298 -1 O LEU A 297 N LEU A 281 SHEET 1 B 3 LYS A 84 SER A 87 0 SHEET 2 B 3 PHE A 364 TYR A 374 -1 O ILE A 365 N ASP A 86 SHEET 3 B 3 VAL A 352 VAL A 358 -1 N PHE A 357 O LEU A 366 SHEET 1 C 5 PHE A 98 LYS A 104 0 SHEET 2 C 5 TYR A 112 VAL A 119 -1 O ASN A 113 N TYR A 103 SHEET 3 C 5 TRP A 135 MSE A 139 -1 O ILE A 136 N ALA A 114 SHEET 4 C 5 ARG A 158 VAL A 168 -1 O GLN A 161 N MSE A 137 SHEET 5 C 5 THR A 176 MSE A 187 -1 O THR A 185 N LEU A 160 SHEET 1 D 6 VAL A 198 TRP A 206 0 SHEET 2 D 6 LYS A 209 TYR A 216 -1 O VAL A 211 N ILE A 204 SHEET 3 D 6 GLU A 248 ASP A 252 1 O ASP A 252 N LEU A 214 SHEET 4 D 6 THR A 314 THR A 319 1 O TYR A 316 N LEU A 251 SHEET 5 D 6 LYS A 339 GLY A 344 1 O VAL A 341 N VAL A 315 SHEET 6 D 6 TYR A 390 GLU A 391 1 O TYR A 390 N GLY A 344 LINK C AVAL A 44 N MSE A 45 1555 1555 1.34 LINK C BVAL A 44 N MSE A 45 1555 1555 1.34 LINK C MSE A 45 N ARG A 46 1555 1555 1.32 LINK C ASP A 54 N MSE A 55 1555 1555 1.32 LINK C MSE A 55 N PRO A 56 1555 1555 1.34 LINK C SER A 77 N MSE A 78 1555 1555 1.34 LINK C MSE A 78 N ASP A 79 1555 1555 1.34 LINK C ILE A 136 N MSE A 137 1555 1555 1.33 LINK C MSE A 137 N MSE A 138 1555 1555 1.34 LINK C MSE A 138 N MSE A 139 1555 1555 1.34 LINK C MSE A 139 N ASN A 140 1555 1555 1.32 LINK C THR A 186 N MSE A 187 1555 1555 1.34 LINK C MSE A 187 N PRO A 188 1555 1555 1.34 LINK C LEU A 214 N MSE A 215 1555 1555 1.33 LINK C MSE A 215 N TYR A 216 1555 1555 1.35 LINK C THR A 269 N MSE A 270 1555 1555 1.33 LINK C MSE A 270 N LEU A 271 1555 1555 1.33 LINK C LYS A 276 N MSE A 277 1555 1555 1.33 LINK C MSE A 277 N ASN A 278 1555 1555 1.34 LINK C GLU A 328 N MSE A 329 1555 1555 1.32 LINK C MSE A 329 N VAL A 330 1555 1555 1.33 LINK C TYR A 337 N MSE A 338 1555 1555 1.32 LINK C MSE A 338 N LYS A 339 1555 1555 1.34 LINK C ILE A 418 N MSE A 419 1555 1555 1.33 LINK C MSE A 419 N SER A 420 1555 1555 1.32 CISPEP 1 TRP A 28 PRO A 29 0 0.42 SITE 1 AC1 4 VAL A 119 HIS A 199 ARG A 200 PHE A 404 SITE 1 AC2 7 ASP A 99 TYR A 100 THR A 101 SER A 117 SITE 2 AC2 7 TYR A 255 HOH A 444 HOH A 674 SITE 1 AC3 7 ARG A 285 LYS A 346 ALA A 383 THR A 384 SITE 2 AC3 7 GLY A 385 HOH A 476 HOH A 721 CRYST1 42.274 91.435 107.126 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023655 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010937 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009335 0.00000