HEADER PROTEIN BINDING 07-OCT-09 3K5J TITLE CRYSTAL STRUCTURE OF PUTATIVE SUFU (SUPPRESSOR OF FUSED PROTEIN) TITLE 2 HOMOLOG (YP_208451.1) FROM NEISSERIA GONORRHOEAE FA 1090 AT 1.40 A TITLE 3 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPPRESSOR OF FUSED FAMILY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA GONORRHOEAE; SOURCE 3 ORGANISM_TAXID: 242231; SOURCE 4 STRAIN: ATCC 700825 / FA 1090; SOURCE 5 GENE: NGO_1391; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS YP_208451.1, PUTATIVE SUFU (SUPPRESSOR OF FUSED PROTEIN) HOMOLOG, KEYWDS 2 STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 3 PROTEIN STRUCTURE INITIATIVE, PSI-2, UNKNOWN FUNCTION, PROTEIN KEYWDS 4 BINDING EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 17-JUL-19 3K5J 1 REMARK LINK REVDAT 4 25-OCT-17 3K5J 1 COMPND SOURCE REMARK DBREF REVDAT 4 2 1 SEQADV SEQRES REVDAT 3 23-MAR-11 3K5J 1 JRNL REVDAT 2 10-NOV-10 3K5J 1 JRNL REVDAT 1 26-JAN-10 3K5J 0 JRNL AUTH D.DAS,R.D.FINN,P.ABDUBEK,T.ASTAKHOVA,H.L.AXELROD, JRNL AUTH 2 C.BAKOLITSA,X.CAI,D.CARLTON,C.CHEN,H.J.CHIU,M.CHIU, JRNL AUTH 3 T.CLAYTON,M.C.DELLER,L.DUAN,K.ELLROTT,C.L.FARR,J.FEUERHELM, JRNL AUTH 4 J.C.GRANT,A.GRZECHNIK,G.W.HAN,L.JAROSZEWSKI,K.K.JIN, JRNL AUTH 5 H.E.KLOCK,M.W.KNUTH,P.KOZBIAL,S.S.KRISHNA,A.KUMAR,W.W.LAM, JRNL AUTH 6 D.MARCIANO,M.D.MILLER,A.T.MORSE,E.NIGOGHOSSIAN,A.NOPAKUN, JRNL AUTH 7 L.OKACH,C.PUCKETT,R.REYES,H.J.TIEN,C.B.TRAME, JRNL AUTH 8 H.VAN DEN BEDEM,D.WEEKES,T.WOOTEN,Q.XU,A.YEH,J.ZHOU, JRNL AUTH 9 K.O.HODGSON,J.WOOLEY,M.A.ELSLIGER,A.M.DEACON,A.GODZIK, JRNL AUTH10 S.A.LESLEY,I.A.WILSON JRNL TITL THE CRYSTAL STRUCTURE OF A BACTERIAL SUFU-LIKE PROTEIN JRNL TITL 2 DEFINES A NOVEL GROUP OF BACTERIAL PROTEINS THAT ARE SIMILAR JRNL TITL 3 TO THE N-TERMINAL DOMAIN OF HUMAN SUFU. JRNL REF PROTEIN SCI. V. 19 2131 2010 JRNL REFN ISSN 0961-8368 JRNL PMID 20836087 JRNL DOI 10.1002/PRO.497 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0053 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 43107 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.136 REMARK 3 R VALUE (WORKING SET) : 0.134 REMARK 3 FREE R VALUE : 0.162 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2169 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2954 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.63 REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE SET COUNT : 150 REMARK 3 BIN FREE R VALUE : 0.2990 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1502 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 265 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.93 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.35000 REMARK 3 B22 (A**2) : 0.35000 REMARK 3 B33 (A**2) : -0.52000 REMARK 3 B12 (A**2) : 0.17000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.054 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.050 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.030 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.657 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.977 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.971 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1682 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1118 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2316 ; 1.604 ; 1.936 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2727 ; 1.056 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 212 ; 5.868 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 89 ;34.101 ;24.270 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 270 ;10.586 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ; 7.173 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 241 ; 0.113 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1893 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 368 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 965 ; 2.747 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 382 ; 1.800 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1589 ; 3.765 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 717 ; 4.516 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 713 ; 6.046 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2800 ; 2.103 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 271 ; 9.235 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2737 ; 4.598 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1.HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2.ATOM RECORDS CONTAIN RESIDUAL B FACTORS REMARK 3 ONLY. 3.A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE REMARK 3 ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED REMARK 3 SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4.SULFATE REMARK 3 (SO4) AND GLYCEROL (GOL) FROM THE CRYSTALLIZATION AND REMARK 3 CRYOPROTECTANT SOLUTIONS HAVE BEEN MODELED IN THE SOLVENT REMARK 3 STRUCTURE. 5.THERE IS A RAMACHANDRAN OUTLIER AT RESIDUE 132. REMARK 4 REMARK 4 3K5J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000055572. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97886 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43173 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 28.724 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.7100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.67200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6000M (NH4)2SO4, 0.1M MES PH 6.0, REMARK 280 NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 95.73067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 47.86533 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 47.86533 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 95.73067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ANALYTICAL SIZE-EXCLUSION CHROMATOGRAPHY REMARK 300 SUPPORT THE ASSIGNMENT OF A MONOMER AS THE SIGNIFICANT REMARK 300 OLIGOMERIC FORM IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 182 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 16 CD CE NZ REMARK 470 GLU A 32 CG CD OE1 OE2 REMARK 470 GLU A 47 CG CD OE1 OE2 REMARK 470 GLU A 156 CD OE1 OE2 REMARK 470 LYS A 161 CD CE NZ REMARK 470 ALA A 181 CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 15 70.25 -108.04 REMARK 500 LEU A 34 72.83 -152.31 REMARK 500 PHE A 95 51.35 -118.01 REMARK 500 ASP A 132 107.71 -0.47 REMARK 500 ASP A 132 -109.06 -16.14 REMARK 500 ASN A 133 -5.27 76.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 253 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A 260 DISTANCE = 6.07 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 183 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 184 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 185 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 186 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 187 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-391948 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3K5J A 1 182 UNP Q5F6Z8 Q5F6Z8_NEIG1 1 182 SEQADV 3K5J GLY A 0 UNP Q5F6Z8 EXPRESSION TAG SEQRES 1 A 183 GLY MSE ASP TYR ASN GLN THR VAL LEU SER HIS LEU GLN SEQRES 2 A 183 LYS PHE TRP LYS HIS HIS ASP ILE LYS GLY PHE THR TRP SEQRES 3 A 183 THR LEU GLY ARG ILE VAL GLU GLU LEU PRO ASP PHE GLN SEQRES 4 A 183 VAL PHE GLN VAL ILE PRO ASN HIS GLU ASP GLU PRO TRP SEQRES 5 A 183 VAL TYR VAL SER SER GLY ILE GLY GLN PHE LEU GLY GLN SEQRES 6 A 183 GLU PHE PHE ILE ILE SER PRO PHE GLU THR PRO GLU HIS SEQRES 7 A 183 ILE GLU THR LEU ALA MSE LEU ALA SER ALA SER MSE HIS SEQRES 8 A 183 TYR PRO ASP GLN PHE GLN LEU GLY LYS THR VAL ASN ILE SEQRES 9 A 183 GLY ARG PRO TRP VAL GLU GLN SER SER PHE ARG HIS PHE SEQRES 10 A 183 LEU ILE SER LEU PRO TYR PRO TYR GLY GLN GLU LEU GLU SEQRES 11 A 183 TYR MSE ASP ASN VAL ARG PHE PHE TRP LEU LEU PRO ILE SEQRES 12 A 183 THR GLN THR GLU ARG LEU PHE LEU ASN THR HIS SER VAL SEQRES 13 A 183 GLU GLU LEU GLU THR LYS PHE ASP GLU ALA GLY ILE ASP SEQRES 14 A 183 TYR LEU ASP ILE ASN ARG ALA SER THR VAL TRP GLN ALA SEQRES 15 A 183 GLY MODRES 3K5J MSE A 1 MET MODIFIED RESIDUE MODRES 3K5J MSE A 83 MET MODIFIED RESIDUE MODRES 3K5J MSE A 89 MET MODIFIED RESIDUE MODRES 3K5J MSE A 131 MET MODIFIED RESIDUE HET MSE A 1 8 HET MSE A 83 13 HET MSE A 89 13 HET MSE A 131 10 HET SO4 A 183 5 HET SO4 A 184 5 HET SO4 A 185 5 HET SO4 A 186 5 HET GOL A 187 6 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 SO4 4(O4 S 2-) FORMUL 6 GOL C3 H8 O3 FORMUL 7 HOH *265(H2 O) HELIX 1 1 GLY A 0 TRP A 15 1 16 HELIX 2 2 GLY A 28 LEU A 34 1 7 HELIX 3 3 ILE A 58 GLY A 63 1 6 HELIX 4 4 PRO A 75 TYR A 91 1 17 HELIX 5 5 PRO A 92 PHE A 95 5 4 HELIX 6 6 GLY A 125 GLU A 129 1 5 HELIX 7 7 THR A 143 LEU A 150 1 8 HELIX 8 8 SER A 154 GLY A 166 1 13 SHEET 1 A 7 ILE A 20 PHE A 23 0 SHEET 2 A 7 GLN A 38 VAL A 42 -1 O GLN A 41 N LYS A 21 SHEET 3 A 7 TRP A 51 SER A 56 -1 O VAL A 52 N VAL A 42 SHEET 4 A 7 GLN A 64 SER A 70 -1 O SER A 70 N TRP A 51 SHEET 5 A 7 VAL A 134 ILE A 142 1 O LEU A 139 N PHE A 67 SHEET 6 A 7 HIS A 115 SER A 119 -1 N SER A 119 O TRP A 138 SHEET 7 A 7 THR A 100 ASN A 102 -1 N VAL A 101 O PHE A 116 SHEET 1 B 6 ILE A 20 PHE A 23 0 SHEET 2 B 6 GLN A 38 VAL A 42 -1 O GLN A 41 N LYS A 21 SHEET 3 B 6 TRP A 51 SER A 56 -1 O VAL A 52 N VAL A 42 SHEET 4 B 6 GLN A 64 SER A 70 -1 O SER A 70 N TRP A 51 SHEET 5 B 6 VAL A 134 ILE A 142 1 O LEU A 139 N PHE A 67 SHEET 6 B 6 TYR A 130 MSE A 131 -1 N MSE A 131 O VAL A 134 LINK C GLY A 0 N MSE A 1 1555 1555 1.34 LINK C MSE A 1 N ASP A 2 1555 1555 1.33 LINK C ALA A 82 N MSE A 83 1555 1555 1.32 LINK C MSE A 83 N LEU A 84 1555 1555 1.35 LINK C SER A 88 N MSE A 89 1555 1555 1.34 LINK C MSE A 89 N HIS A 90 1555 1555 1.33 LINK C TYR A 130 N MSE A 131 1555 1555 1.32 LINK C AMSE A 131 N AASP A 132 1555 1555 1.32 LINK C BMSE A 131 N BASP A 132 1555 1555 1.32 SITE 1 AC1 9 GLY A 0 MSE A 1 ASP A 2 TYR A 3 SITE 2 AC1 9 GLN A 60 HOH A 222 HOH A 234 HOH A 301 SITE 3 AC1 9 HOH A 375 SITE 1 AC2 6 TRP A 15 LYS A 16 HIS A 17 HIS A 18 SITE 2 AC2 6 HOH A 213 HOH A 215 SITE 1 AC3 10 TRP A 25 GLY A 28 ARG A 29 THR A 143 SITE 2 AC3 10 GLN A 144 THR A 145 SER A 176 HOH A 270 SITE 3 AC3 10 HOH A 287 HOH A 355 SITE 1 AC4 7 ASN A 102 HIS A 115 ARG A 147 HOH A 228 SITE 2 AC4 7 HOH A 336 HOH A 407 HOH A 418 SITE 1 AC5 8 TYR A 122 PHE A 162 ASP A 163 HOH A 292 SITE 2 AC5 8 HOH A 314 HOH A 351 HOH A 405 HOH A 416 CRYST1 50.719 50.719 143.596 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019716 0.011383 0.000000 0.00000 SCALE2 0.000000 0.022767 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006964 0.00000