data_3K6B # _entry.id 3K6B # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.378 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3K6B pdb_00003k6b 10.2210/pdb3k6b/pdb RCSB RCSB055600 ? ? WWPDB D_1000055600 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1RW6 'The E2 domain of human amyloid precursor protein' unspecified PDB 3K66 'Crystal structure of the E2 domain of C. elegans APL-1' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3K6B _pdbx_database_status.recvd_initial_deposition_date 2009-10-08 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hoopes, J.T.' 1 'Ha, Y.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Structural characterization of the E2 domain of APL-1, a Caenorhabditis elegans homolog of human amyloid precursor protein, and its heparin binding site ; J.Biol.Chem. 285 2165 2173 2010 JBCHA3 US 0021-9258 0071 ? 19906646 10.1074/jbc.M109.018432 1 'The X-ray structure of an antiparallel dimer of the human amyloid precursor protein E2 domain.' Mol.Cell 15 343 353 2004 MOCEFL US 1097-2765 2168 ? 15304215 10.1016/j.molcel.2004.06.037 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hoopes, J.T.' 1 ? primary 'Liu, X.' 2 ? primary 'Xu, X.' 3 ? primary 'Demeler, B.' 4 ? primary 'Folta-Stogniew, E.' 5 ? primary 'Li, C.' 6 ? primary 'Ha, Y.' 7 ? 1 'Wang, Y.' 8 ? 1 'Ha, Y.' 9 ? # _cell.entry_id 3K6B _cell.length_a 97.314 _cell.length_b 97.314 _cell.length_c 67.462 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3K6B _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Beta-amyloid-like protein' 28516.445 1 ? ? ;E2 Domain: UNP residues 240-478' ; ? 2 non-polymer man 2,3,4,6-tetra-O-sulfonato-alpha-D-glucopyranose 500.409 1 ? ? ? ? 3 water nat water 18.015 34 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SQDPYFKIANWTNEHDDFKKAEMRMDEKHRKKVDKVMKEWGDLETRYNEQKAKDPKGAEKFKSQMNARFQKTVSSLEEEH KRMRKEIEAVHEERVQAMLNEKKRDATHDYRQALATHVNKPNKHSVLQSLKAYIRAEEKDRMHTLNRYRHLLKADSKEAA AYKPTVIHRLRYIDLRINGTLAMLRDFPDLEKYVRPIAVTYWKDYRDEVSPDISVEDSELTPIIHDDEFSKNAKLDVKA ; _entity_poly.pdbx_seq_one_letter_code_can ;SQDPYFKIANWTNEHDDFKKAEMRMDEKHRKKVDKVMKEWGDLETRYNEQKAKDPKGAEKFKSQMNARFQKTVSSLEEEH KRMRKEIEAVHEERVQAMLNEKKRDATHDYRQALATHVNKPNKHSVLQSLKAYIRAEEKDRMHTLNRYRHLLKADSKEAA AYKPTVIHRLRYIDLRINGTLAMLRDFPDLEKYVRPIAVTYWKDYRDEVSPDISVEDSELTPIIHDDEFSKNAKLDVKA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 GLN n 1 3 ASP n 1 4 PRO n 1 5 TYR n 1 6 PHE n 1 7 LYS n 1 8 ILE n 1 9 ALA n 1 10 ASN n 1 11 TRP n 1 12 THR n 1 13 ASN n 1 14 GLU n 1 15 HIS n 1 16 ASP n 1 17 ASP n 1 18 PHE n 1 19 LYS n 1 20 LYS n 1 21 ALA n 1 22 GLU n 1 23 MET n 1 24 ARG n 1 25 MET n 1 26 ASP n 1 27 GLU n 1 28 LYS n 1 29 HIS n 1 30 ARG n 1 31 LYS n 1 32 LYS n 1 33 VAL n 1 34 ASP n 1 35 LYS n 1 36 VAL n 1 37 MET n 1 38 LYS n 1 39 GLU n 1 40 TRP n 1 41 GLY n 1 42 ASP n 1 43 LEU n 1 44 GLU n 1 45 THR n 1 46 ARG n 1 47 TYR n 1 48 ASN n 1 49 GLU n 1 50 GLN n 1 51 LYS n 1 52 ALA n 1 53 LYS n 1 54 ASP n 1 55 PRO n 1 56 LYS n 1 57 GLY n 1 58 ALA n 1 59 GLU n 1 60 LYS n 1 61 PHE n 1 62 LYS n 1 63 SER n 1 64 GLN n 1 65 MET n 1 66 ASN n 1 67 ALA n 1 68 ARG n 1 69 PHE n 1 70 GLN n 1 71 LYS n 1 72 THR n 1 73 VAL n 1 74 SER n 1 75 SER n 1 76 LEU n 1 77 GLU n 1 78 GLU n 1 79 GLU n 1 80 HIS n 1 81 LYS n 1 82 ARG n 1 83 MET n 1 84 ARG n 1 85 LYS n 1 86 GLU n 1 87 ILE n 1 88 GLU n 1 89 ALA n 1 90 VAL n 1 91 HIS n 1 92 GLU n 1 93 GLU n 1 94 ARG n 1 95 VAL n 1 96 GLN n 1 97 ALA n 1 98 MET n 1 99 LEU n 1 100 ASN n 1 101 GLU n 1 102 LYS n 1 103 LYS n 1 104 ARG n 1 105 ASP n 1 106 ALA n 1 107 THR n 1 108 HIS n 1 109 ASP n 1 110 TYR n 1 111 ARG n 1 112 GLN n 1 113 ALA n 1 114 LEU n 1 115 ALA n 1 116 THR n 1 117 HIS n 1 118 VAL n 1 119 ASN n 1 120 LYS n 1 121 PRO n 1 122 ASN n 1 123 LYS n 1 124 HIS n 1 125 SER n 1 126 VAL n 1 127 LEU n 1 128 GLN n 1 129 SER n 1 130 LEU n 1 131 LYS n 1 132 ALA n 1 133 TYR n 1 134 ILE n 1 135 ARG n 1 136 ALA n 1 137 GLU n 1 138 GLU n 1 139 LYS n 1 140 ASP n 1 141 ARG n 1 142 MET n 1 143 HIS n 1 144 THR n 1 145 LEU n 1 146 ASN n 1 147 ARG n 1 148 TYR n 1 149 ARG n 1 150 HIS n 1 151 LEU n 1 152 LEU n 1 153 LYS n 1 154 ALA n 1 155 ASP n 1 156 SER n 1 157 LYS n 1 158 GLU n 1 159 ALA n 1 160 ALA n 1 161 ALA n 1 162 TYR n 1 163 LYS n 1 164 PRO n 1 165 THR n 1 166 VAL n 1 167 ILE n 1 168 HIS n 1 169 ARG n 1 170 LEU n 1 171 ARG n 1 172 TYR n 1 173 ILE n 1 174 ASP n 1 175 LEU n 1 176 ARG n 1 177 ILE n 1 178 ASN n 1 179 GLY n 1 180 THR n 1 181 LEU n 1 182 ALA n 1 183 MET n 1 184 LEU n 1 185 ARG n 1 186 ASP n 1 187 PHE n 1 188 PRO n 1 189 ASP n 1 190 LEU n 1 191 GLU n 1 192 LYS n 1 193 TYR n 1 194 VAL n 1 195 ARG n 1 196 PRO n 1 197 ILE n 1 198 ALA n 1 199 VAL n 1 200 THR n 1 201 TYR n 1 202 TRP n 1 203 LYS n 1 204 ASP n 1 205 TYR n 1 206 ARG n 1 207 ASP n 1 208 GLU n 1 209 VAL n 1 210 SER n 1 211 PRO n 1 212 ASP n 1 213 ILE n 1 214 SER n 1 215 VAL n 1 216 GLU n 1 217 ASP n 1 218 SER n 1 219 GLU n 1 220 LEU n 1 221 THR n 1 222 PRO n 1 223 ILE n 1 224 ILE n 1 225 HIS n 1 226 ASP n 1 227 ASP n 1 228 GLU n 1 229 PHE n 1 230 SER n 1 231 LYS n 1 232 ASN n 1 233 ALA n 1 234 LYS n 1 235 LEU n 1 236 ASP n 1 237 VAL n 1 238 LYS n 1 239 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name nematode _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'apl-1, C42D8.8' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Caenorhabditis elegans' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 6239 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A4_CAEEL _struct_ref.pdbx_db_accession Q10651 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SQDPYFKIANWTNEHDDFKKAEMRMDEKHRKKVDKVMKEWGDLETRYNEQKAKDPKGAEKFKSQMNARFQKTVSSLEEEH KRMRKEIEAVHEERVQAMLNEKKRDATHDYRQALATHVNKPNKHSVLQSLKAYIRAEEKDRMHTLNRYRHLLKADSKEAA AYKPTVIHRLRYIDLRINGTLAMLRDFPDLEKYVRPIAVTYWKDYRDEVSPDISVEDSELTPIIHDDEFSKNAKLDVKA ; _struct_ref.pdbx_align_begin 240 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3K6B _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 239 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q10651 _struct_ref_seq.db_align_beg 240 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 478 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 234 _struct_ref_seq.pdbx_auth_seq_align_end 472 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GU4 'D-saccharide, alpha linking' n 2,3,4,6-tetra-O-sulfonato-alpha-D-glucopyranose '2,3,4,6-tetra-O-sulfonato-alpha-D-glucose; 2,3,4,6-tetra-O-sulfonato-D-glucose; 2,3,4,6-tetra-O-sulfonato-glucose' 'C6 H12 O18 S4' 500.409 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3K6B _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.23 _exptl_crystal.density_percent_sol 61.96 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details '20% PEG 3350, 15% Isopropanol, 0.1 M Hepes pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2007-05-20 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0809 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X29A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X29A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0809 # _reflns.entry_id 3K6B _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 40.0 _reflns.d_resolution_high 2.80 _reflns.number_obs 9028 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.053 _reflns.pdbx_netI_over_sigmaI 20.7 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 9.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.80 _reflns_shell.d_res_low 2.90 _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.346 _reflns_shell.meanI_over_sigI_obs 2.6 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3K6B _refine.ls_number_reflns_obs 9028 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.6 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 40.0 _refine.ls_d_res_high 2.80 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.262 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.262 _refine.ls_R_factor_R_free 0.309 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 84.5 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB entry 3K66' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1713 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 28 _refine_hist.number_atoms_solvent 34 _refine_hist.number_atoms_total 1775 _refine_hist.d_res_high 2.80 _refine_hist.d_res_low 40.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.011 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.46 ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 3K6B _struct.title 'X-ray crystal structure of the E2 domain of APL-1 from C. elegans, in complex with sucrose octasulfate (SOS)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3K6B _struct_keywords.pdbx_keywords 'CELL ADHESION' _struct_keywords.text ;X-ray crystal structure, amyloid precursor protein, heparin binding, Alternative splicing, Amyloid, Developmental protein, Differentiation, Glycoprotein, Membrane, Neurogenesis, Transmembrane, CELL ADHESION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 3 ? ILE A 8 ? ASP A 236 ILE A 241 5 ? 6 HELX_P HELX_P2 2 ASN A 13 ? ASP A 54 ? ASN A 246 ASP A 287 1 ? 42 HELX_P HELX_P3 3 ASP A 54 ? LYS A 120 ? ASP A 287 LYS A 353 1 ? 67 HELX_P HELX_P4 4 ASN A 122 ? ASP A 155 ? ASN A 355 ASP A 388 1 ? 34 HELX_P HELX_P5 5 ASP A 155 ? ALA A 161 ? ASP A 388 ALA A 394 1 ? 7 HELX_P HELX_P6 6 TYR A 162 ? MET A 183 ? TYR A 395 MET A 416 1 ? 22 HELX_P HELX_P7 7 PHE A 187 ? LYS A 192 ? PHE A 420 LYS A 425 1 ? 6 HELX_P HELX_P8 8 VAL A 194 ? SER A 210 ? VAL A 427 SER A 443 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _database_PDB_matrix.entry_id 3K6B _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3K6B _atom_sites.fract_transf_matrix[1][1] 0.010276 _atom_sites.fract_transf_matrix[1][2] 0.005933 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011866 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014823 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 234 234 SER SER A . n A 1 2 GLN 2 235 235 GLN GLN A . n A 1 3 ASP 3 236 236 ASP ASP A . n A 1 4 PRO 4 237 237 PRO PRO A . n A 1 5 TYR 5 238 238 TYR TYR A . n A 1 6 PHE 6 239 239 PHE PHE A . n A 1 7 LYS 7 240 240 LYS ALA A . n A 1 8 ILE 8 241 241 ILE ILE A . n A 1 9 ALA 9 242 242 ALA ALA A . n A 1 10 ASN 10 243 243 ASN ASN A . n A 1 11 TRP 11 244 244 TRP TRP A . n A 1 12 THR 12 245 245 THR THR A . n A 1 13 ASN 13 246 246 ASN ASN A . n A 1 14 GLU 14 247 247 GLU GLU A . n A 1 15 HIS 15 248 248 HIS HIS A . n A 1 16 ASP 16 249 249 ASP ASP A . n A 1 17 ASP 17 250 250 ASP ASP A . n A 1 18 PHE 18 251 251 PHE PHE A . n A 1 19 LYS 19 252 252 LYS SER A . n A 1 20 LYS 20 253 253 LYS ALA A . n A 1 21 ALA 21 254 254 ALA ALA A . n A 1 22 GLU 22 255 255 GLU GLU A . n A 1 23 MET 23 256 256 MET MET A . n A 1 24 ARG 24 257 257 ARG ARG A . n A 1 25 MET 25 258 258 MET MET A . n A 1 26 ASP 26 259 259 ASP ASP A . n A 1 27 GLU 27 260 260 GLU GLU A . n A 1 28 LYS 28 261 261 LYS SER A . n A 1 29 HIS 29 262 262 HIS HIS A . n A 1 30 ARG 30 263 263 ARG ARG A . n A 1 31 LYS 31 264 264 LYS SER A . n A 1 32 LYS 32 265 265 LYS SER A . n A 1 33 VAL 33 266 266 VAL VAL A . n A 1 34 ASP 34 267 267 ASP ASP A . n A 1 35 LYS 35 268 268 LYS SER A . n A 1 36 VAL 36 269 269 VAL VAL A . n A 1 37 MET 37 270 270 MET MET A . n A 1 38 LYS 38 271 271 LYS LYS A . n A 1 39 GLU 39 272 272 GLU SER A . n A 1 40 TRP 40 273 273 TRP TRP A . n A 1 41 GLY 41 274 274 GLY GLY A . n A 1 42 ASP 42 275 275 ASP ASP A . n A 1 43 LEU 43 276 276 LEU LEU A . n A 1 44 GLU 44 277 277 GLU GLU A . n A 1 45 THR 45 278 278 THR THR A . n A 1 46 ARG 46 279 279 ARG SER A . n A 1 47 TYR 47 280 280 TYR TYR A . n A 1 48 ASN 48 281 281 ASN ASN A . n A 1 49 GLU 49 282 282 GLU GLU A . n A 1 50 GLN 50 283 283 GLN GLN A . n A 1 51 LYS 51 284 284 LYS LYS A . n A 1 52 ALA 52 285 285 ALA ALA A . n A 1 53 LYS 53 286 286 LYS LYS A . n A 1 54 ASP 54 287 287 ASP ASP A . n A 1 55 PRO 55 288 288 PRO PRO A . n A 1 56 LYS 56 289 289 LYS ALA A . n A 1 57 GLY 57 290 290 GLY GLY A . n A 1 58 ALA 58 291 291 ALA ALA A . n A 1 59 GLU 59 292 292 GLU GLU A . n A 1 60 LYS 60 293 293 LYS SER A . n A 1 61 PHE 61 294 294 PHE PHE A . n A 1 62 LYS 62 295 295 LYS LYS A . n A 1 63 SER 63 296 296 SER SER A . n A 1 64 GLN 64 297 297 GLN ALA A . n A 1 65 MET 65 298 298 MET MET A . n A 1 66 ASN 66 299 299 ASN ASN A . n A 1 67 ALA 67 300 300 ALA ALA A . n A 1 68 ARG 68 301 301 ARG SER A . n A 1 69 PHE 69 302 302 PHE PHE A . n A 1 70 GLN 70 303 303 GLN GLN A . n A 1 71 LYS 71 304 304 LYS SER A . n A 1 72 THR 72 305 305 THR THR A . n A 1 73 VAL 73 306 306 VAL VAL A . n A 1 74 SER 74 307 307 SER SER A . n A 1 75 SER 75 308 308 SER SER A . n A 1 76 LEU 76 309 309 LEU LEU A . n A 1 77 GLU 77 310 310 GLU GLU A . n A 1 78 GLU 78 311 311 GLU GLU A . n A 1 79 GLU 79 312 312 GLU SER A . n A 1 80 HIS 80 313 313 HIS HIS A . n A 1 81 LYS 81 314 314 LYS SER A . n A 1 82 ARG 82 315 315 ARG ARG A . n A 1 83 MET 83 316 316 MET MET A . n A 1 84 ARG 84 317 317 ARG SER A . n A 1 85 LYS 85 318 318 LYS SER A . n A 1 86 GLU 86 319 319 GLU GLU A . n A 1 87 ILE 87 320 320 ILE ILE A . n A 1 88 GLU 88 321 321 GLU GLU A . n A 1 89 ALA 89 322 322 ALA ALA A . n A 1 90 VAL 90 323 323 VAL VAL A . n A 1 91 HIS 91 324 324 HIS HIS A . n A 1 92 GLU 92 325 325 GLU ALA A . n A 1 93 GLU 93 326 326 GLU SER A . n A 1 94 ARG 94 327 327 ARG ARG A . n A 1 95 VAL 95 328 328 VAL VAL A . n A 1 96 GLN 96 329 329 GLN GLN A . n A 1 97 ALA 97 330 330 ALA ALA A . n A 1 98 MET 98 331 331 MET MET A . n A 1 99 LEU 99 332 332 LEU LEU A . n A 1 100 ASN 100 333 333 ASN ASN A . n A 1 101 GLU 101 334 334 GLU GLU A . n A 1 102 LYS 102 335 335 LYS SER A . n A 1 103 LYS 103 336 336 LYS LYS A . n A 1 104 ARG 104 337 337 ARG ARG A . n A 1 105 ASP 105 338 338 ASP ASP A . n A 1 106 ALA 106 339 339 ALA ALA A . n A 1 107 THR 107 340 340 THR THR A . n A 1 108 HIS 108 341 341 HIS HIS A . n A 1 109 ASP 109 342 342 ASP ASP A . n A 1 110 TYR 110 343 343 TYR TYR A . n A 1 111 ARG 111 344 344 ARG ARG A . n A 1 112 GLN 112 345 345 GLN GLN A . n A 1 113 ALA 113 346 346 ALA ALA A . n A 1 114 LEU 114 347 347 LEU LEU A . n A 1 115 ALA 115 348 348 ALA ALA A . n A 1 116 THR 116 349 349 THR THR A . n A 1 117 HIS 117 350 350 HIS HIS A . n A 1 118 VAL 118 351 351 VAL VAL A . n A 1 119 ASN 119 352 352 ASN ASN A . n A 1 120 LYS 120 353 353 LYS LYS A . n A 1 121 PRO 121 354 354 PRO PRO A . n A 1 122 ASN 122 355 355 ASN ASN A . n A 1 123 LYS 123 356 356 LYS LYS A . n A 1 124 HIS 124 357 357 HIS HIS A . n A 1 125 SER 125 358 358 SER SER A . n A 1 126 VAL 126 359 359 VAL VAL A . n A 1 127 LEU 127 360 360 LEU LEU A . n A 1 128 GLN 128 361 361 GLN GLN A . n A 1 129 SER 129 362 362 SER SER A . n A 1 130 LEU 130 363 363 LEU LEU A . n A 1 131 LYS 131 364 364 LYS LYS A . n A 1 132 ALA 132 365 365 ALA ALA A . n A 1 133 TYR 133 366 366 TYR TYR A . n A 1 134 ILE 134 367 367 ILE ILE A . n A 1 135 ARG 135 368 368 ARG ARG A . n A 1 136 ALA 136 369 369 ALA ALA A . n A 1 137 GLU 137 370 370 GLU GLU A . n A 1 138 GLU 138 371 371 GLU GLU A . n A 1 139 LYS 139 372 372 LYS SER A . n A 1 140 ASP 140 373 373 ASP ASP A . n A 1 141 ARG 141 374 374 ARG ARG A . n A 1 142 MET 142 375 375 MET MET A . n A 1 143 HIS 143 376 376 HIS HIS A . n A 1 144 THR 144 377 377 THR THR A . n A 1 145 LEU 145 378 378 LEU LEU A . n A 1 146 ASN 146 379 379 ASN ASN A . n A 1 147 ARG 147 380 380 ARG ARG A . n A 1 148 TYR 148 381 381 TYR TYR A . n A 1 149 ARG 149 382 382 ARG ALA A . n A 1 150 HIS 150 383 383 HIS SER A . n A 1 151 LEU 151 384 384 LEU LEU A . n A 1 152 LEU 152 385 385 LEU LEU A . n A 1 153 LYS 153 386 386 LYS ALA A . n A 1 154 ALA 154 387 387 ALA ALA A . n A 1 155 ASP 155 388 388 ASP SER A . n A 1 156 SER 156 389 389 SER SER A . n A 1 157 LYS 157 390 390 LYS ALA A . n A 1 158 GLU 158 391 391 GLU ALA A . n A 1 159 ALA 159 392 392 ALA ALA A . n A 1 160 ALA 160 393 393 ALA ALA A . n A 1 161 ALA 161 394 394 ALA ALA A . n A 1 162 TYR 162 395 395 TYR TYR A . n A 1 163 LYS 163 396 396 LYS LYS A . n A 1 164 PRO 164 397 397 PRO PRO A . n A 1 165 THR 165 398 398 THR THR A . n A 1 166 VAL 166 399 399 VAL VAL A . n A 1 167 ILE 167 400 400 ILE ILE A . n A 1 168 HIS 168 401 401 HIS HIS A . n A 1 169 ARG 169 402 402 ARG ARG A . n A 1 170 LEU 170 403 403 LEU LEU A . n A 1 171 ARG 171 404 404 ARG ARG A . n A 1 172 TYR 172 405 405 TYR TYR A . n A 1 173 ILE 173 406 406 ILE ILE A . n A 1 174 ASP 174 407 407 ASP ASP A . n A 1 175 LEU 175 408 408 LEU LEU A . n A 1 176 ARG 176 409 409 ARG ARG A . n A 1 177 ILE 177 410 410 ILE ILE A . n A 1 178 ASN 178 411 411 ASN ASN A . n A 1 179 GLY 179 412 412 GLY GLY A . n A 1 180 THR 180 413 413 THR THR A . n A 1 181 LEU 181 414 414 LEU LEU A . n A 1 182 ALA 182 415 415 ALA ALA A . n A 1 183 MET 183 416 416 MET MET A . n A 1 184 LEU 184 417 417 LEU LEU A . n A 1 185 ARG 185 418 418 ARG ARG A . n A 1 186 ASP 186 419 419 ASP ASP A . n A 1 187 PHE 187 420 420 PHE PHE A . n A 1 188 PRO 188 421 421 PRO PRO A . n A 1 189 ASP 189 422 422 ASP ASP A . n A 1 190 LEU 190 423 423 LEU LEU A . n A 1 191 GLU 191 424 424 GLU GLU A . n A 1 192 LYS 192 425 425 LYS SER A . n A 1 193 TYR 193 426 426 TYR TYR A . n A 1 194 VAL 194 427 427 VAL VAL A . n A 1 195 ARG 195 428 428 ARG ARG A . n A 1 196 PRO 196 429 429 PRO PRO A . n A 1 197 ILE 197 430 430 ILE ILE A . n A 1 198 ALA 198 431 431 ALA ALA A . n A 1 199 VAL 199 432 432 VAL VAL A . n A 1 200 THR 200 433 433 THR THR A . n A 1 201 TYR 201 434 434 TYR TYR A . n A 1 202 TRP 202 435 435 TRP TRP A . n A 1 203 LYS 203 436 436 LYS LYS A . n A 1 204 ASP 204 437 437 ASP ASP A . n A 1 205 TYR 205 438 438 TYR TYR A . n A 1 206 ARG 206 439 439 ARG ARG A . n A 1 207 ASP 207 440 440 ASP ASP A . n A 1 208 GLU 208 441 441 GLU GLU A . n A 1 209 VAL 209 442 442 VAL VAL A . n A 1 210 SER 210 443 443 SER SER A . n A 1 211 PRO 211 444 444 PRO PRO A . n A 1 212 ASP 212 445 445 ASP ALA A . n A 1 213 ILE 213 446 446 ILE ILE A . n A 1 214 SER 214 447 447 SER ALA A . n A 1 215 VAL 215 448 448 VAL ALA A . n A 1 216 GLU 216 449 449 GLU ALA A . n A 1 217 ASP 217 450 450 ASP ALA A . n A 1 218 SER 218 451 450 SER ALA A . n A 1 219 GLU 219 452 ? ? ? A . n A 1 220 LEU 220 453 ? ? ? A . n A 1 221 THR 221 454 ? ? ? A . n A 1 222 PRO 222 455 ? ? ? A . n A 1 223 ILE 223 456 ? ? ? A . n A 1 224 ILE 224 457 ? ? ? A . n A 1 225 HIS 225 458 ? ? ? A . n A 1 226 ASP 226 459 ? ? ? A . n A 1 227 ASP 227 460 ? ? ? A . n A 1 228 GLU 228 461 ? ? ? A . n A 1 229 PHE 229 462 ? ? ? A . n A 1 230 SER 230 463 ? ? ? A . n A 1 231 LYS 231 464 ? ? ? A . n A 1 232 ASN 232 465 ? ? ? A . n A 1 233 ALA 233 466 ? ? ? A . n A 1 234 LYS 234 467 ? ? ? A . n A 1 235 LEU 235 468 ? ? ? A . n A 1 236 ASP 236 469 ? ? ? A . n A 1 237 VAL 237 470 ? ? ? A . n A 1 238 LYS 238 471 ? ? ? A . n A 1 239 ALA 239 472 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GU4 1 501 501 GU4 NT2 A . C 3 HOH 1 1 1 HOH TIP A . C 3 HOH 2 2 2 HOH TIP A . C 3 HOH 3 3 3 HOH TIP A . C 3 HOH 4 4 4 HOH TIP A . C 3 HOH 5 5 5 HOH TIP A . C 3 HOH 6 6 6 HOH TIP A . C 3 HOH 7 7 7 HOH TIP A . C 3 HOH 8 8 8 HOH TIP A . C 3 HOH 9 9 9 HOH TIP A . C 3 HOH 10 10 10 HOH TIP A . C 3 HOH 11 11 11 HOH TIP A . C 3 HOH 12 12 12 HOH TIP A . C 3 HOH 13 13 13 HOH TIP A . C 3 HOH 14 14 14 HOH TIP A . C 3 HOH 15 15 15 HOH TIP A . C 3 HOH 16 16 16 HOH TIP A . C 3 HOH 17 17 17 HOH TIP A . C 3 HOH 18 18 18 HOH TIP A . C 3 HOH 19 19 19 HOH TIP A . C 3 HOH 20 20 20 HOH TIP A . C 3 HOH 21 21 21 HOH TIP A . C 3 HOH 22 22 22 HOH TIP A . C 3 HOH 23 23 23 HOH TIP A . C 3 HOH 24 24 24 HOH TIP A . C 3 HOH 25 25 25 HOH TIP A . C 3 HOH 26 26 26 HOH TIP A . C 3 HOH 27 27 27 HOH TIP A . C 3 HOH 28 28 28 HOH TIP A . C 3 HOH 29 29 29 HOH TIP A . C 3 HOH 30 30 30 HOH TIP A . C 3 HOH 31 31 31 HOH TIP A . C 3 HOH 32 32 32 HOH TIP A . C 3 HOH 33 33 33 HOH TIP A . C 3 HOH 34 34 34 HOH TIP A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-11-10 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 2 0 2020-04-22 4 'Structure model' 2 1 2020-07-29 5 'Structure model' 2 2 2023-09-06 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Atomic model' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Non-polymer description' 6 3 'Structure model' 'Structure summary' 7 4 'Structure model' 'Data collection' 8 4 'Structure model' 'Derived calculations' 9 4 'Structure model' 'Structure summary' 10 5 'Structure model' 'Data collection' 11 5 'Structure model' 'Database references' 12 5 'Structure model' 'Refinement description' 13 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' atom_site 2 3 'Structure model' chem_comp 3 3 'Structure model' entity 4 3 'Structure model' pdbx_entity_nonpoly 5 3 'Structure model' pdbx_nonpoly_scheme 6 4 'Structure model' chem_comp 7 4 'Structure model' entity 8 4 'Structure model' pdbx_chem_comp_identifier 9 4 'Structure model' pdbx_entity_nonpoly 10 4 'Structure model' struct_site 11 4 'Structure model' struct_site_gen 12 5 'Structure model' chem_comp 13 5 'Structure model' chem_comp_atom 14 5 'Structure model' chem_comp_bond 15 5 'Structure model' database_2 16 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_atom_site.B_iso_or_equiv' 2 3 'Structure model' '_atom_site.Cartn_x' 3 3 'Structure model' '_atom_site.Cartn_y' 4 3 'Structure model' '_atom_site.Cartn_z' 5 3 'Structure model' '_atom_site.auth_atom_id' 6 3 'Structure model' '_atom_site.auth_comp_id' 7 3 'Structure model' '_atom_site.label_atom_id' 8 3 'Structure model' '_atom_site.label_comp_id' 9 3 'Structure model' '_atom_site.type_symbol' 10 3 'Structure model' '_chem_comp.formula' 11 3 'Structure model' '_chem_comp.formula_weight' 12 3 'Structure model' '_chem_comp.id' 13 3 'Structure model' '_chem_comp.mon_nstd_flag' 14 3 'Structure model' '_chem_comp.name' 15 3 'Structure model' '_chem_comp.type' 16 3 'Structure model' '_entity.pdbx_description' 17 3 'Structure model' '_pdbx_entity_nonpoly.comp_id' 18 3 'Structure model' '_pdbx_entity_nonpoly.name' 19 3 'Structure model' '_pdbx_nonpoly_scheme.mon_id' 20 3 'Structure model' '_pdbx_nonpoly_scheme.pdb_mon_id' 21 4 'Structure model' '_chem_comp.mon_nstd_flag' 22 4 'Structure model' '_chem_comp.name' 23 4 'Structure model' '_chem_comp.type' 24 4 'Structure model' '_entity.pdbx_description' 25 4 'Structure model' '_pdbx_entity_nonpoly.name' 26 5 'Structure model' '_chem_comp.pdbx_synonyms' 27 5 'Structure model' '_database_2.pdbx_DOI' 28 5 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 CNS refinement . ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 CNS phasing . ? 5 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 C _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 LYS _pdbx_validate_rmsd_angle.auth_seq_id_1 353 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 N _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 PRO _pdbx_validate_rmsd_angle.auth_seq_id_2 354 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CA _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 PRO _pdbx_validate_rmsd_angle.auth_seq_id_3 354 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 131.15 _pdbx_validate_rmsd_angle.angle_target_value 119.30 _pdbx_validate_rmsd_angle.angle_deviation 11.85 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.50 _pdbx_validate_rmsd_angle.linker_flag Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 242 ? ? -146.36 10.84 2 1 TRP A 244 ? ? 55.37 -7.82 3 1 PRO A 288 ? ? -38.42 -32.40 4 1 ASN A 352 ? ? -76.56 -80.19 5 1 PRO A 354 ? ? -33.37 77.65 6 1 LYS A 356 ? ? -10.53 -82.96 7 1 SER A 389 ? ? -58.83 -8.70 8 1 LYS A 390 ? ? -96.06 -67.74 9 1 TYR A 395 ? ? -130.28 -37.38 10 1 ARG A 418 ? ? -39.18 -36.60 11 1 PHE A 420 ? ? -104.55 75.87 12 1 PRO A 444 ? ? -47.27 -123.97 13 1 ASP A 445 ? ? -136.55 -58.20 14 1 ILE A 446 ? ? 84.36 145.28 15 1 ASP A 450 ? ? -171.88 91.43 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 240 ? CG ? A LYS 7 CG 2 1 Y 1 A LYS 240 ? CD ? A LYS 7 CD 3 1 Y 1 A LYS 240 ? CE ? A LYS 7 CE 4 1 Y 1 A LYS 240 ? NZ ? A LYS 7 NZ 5 1 Y 1 A LYS 252 ? CD ? A LYS 19 CD 6 1 Y 1 A LYS 252 ? CE ? A LYS 19 CE 7 1 Y 1 A LYS 252 ? NZ ? A LYS 19 NZ 8 1 Y 1 A LYS 253 ? CG ? A LYS 20 CG 9 1 Y 1 A LYS 253 ? CD ? A LYS 20 CD 10 1 Y 1 A LYS 253 ? CE ? A LYS 20 CE 11 1 Y 1 A LYS 253 ? NZ ? A LYS 20 NZ 12 1 Y 1 A LYS 261 ? CD ? A LYS 28 CD 13 1 Y 1 A LYS 261 ? CE ? A LYS 28 CE 14 1 Y 1 A LYS 261 ? NZ ? A LYS 28 NZ 15 1 Y 1 A LYS 264 ? CD ? A LYS 31 CD 16 1 Y 1 A LYS 264 ? CE ? A LYS 31 CE 17 1 Y 1 A LYS 264 ? NZ ? A LYS 31 NZ 18 1 Y 1 A LYS 265 ? CD ? A LYS 32 CD 19 1 Y 1 A LYS 265 ? CE ? A LYS 32 CE 20 1 Y 1 A LYS 265 ? NZ ? A LYS 32 NZ 21 1 Y 1 A LYS 268 ? CD ? A LYS 35 CD 22 1 Y 1 A LYS 268 ? CE ? A LYS 35 CE 23 1 Y 1 A LYS 268 ? NZ ? A LYS 35 NZ 24 1 Y 1 A GLU 272 ? CD ? A GLU 39 CD 25 1 Y 1 A GLU 272 ? OE1 ? A GLU 39 OE1 26 1 Y 1 A GLU 272 ? OE2 ? A GLU 39 OE2 27 1 Y 1 A ARG 279 ? CD ? A ARG 46 CD 28 1 Y 1 A ARG 279 ? NE ? A ARG 46 NE 29 1 Y 1 A ARG 279 ? CZ ? A ARG 46 CZ 30 1 Y 1 A ARG 279 ? NH1 ? A ARG 46 NH1 31 1 Y 1 A ARG 279 ? NH2 ? A ARG 46 NH2 32 1 Y 1 A LYS 289 ? CG ? A LYS 56 CG 33 1 Y 1 A LYS 289 ? CD ? A LYS 56 CD 34 1 Y 1 A LYS 289 ? CE ? A LYS 56 CE 35 1 Y 1 A LYS 289 ? NZ ? A LYS 56 NZ 36 1 Y 1 A LYS 293 ? CD ? A LYS 60 CD 37 1 Y 1 A LYS 293 ? CE ? A LYS 60 CE 38 1 Y 1 A LYS 293 ? NZ ? A LYS 60 NZ 39 1 Y 1 A GLN 297 ? CG ? A GLN 64 CG 40 1 Y 1 A GLN 297 ? CD ? A GLN 64 CD 41 1 Y 1 A GLN 297 ? OE1 ? A GLN 64 OE1 42 1 Y 1 A GLN 297 ? NE2 ? A GLN 64 NE2 43 1 Y 1 A ARG 301 ? CD ? A ARG 68 CD 44 1 Y 1 A ARG 301 ? NE ? A ARG 68 NE 45 1 Y 1 A ARG 301 ? CZ ? A ARG 68 CZ 46 1 Y 1 A ARG 301 ? NH1 ? A ARG 68 NH1 47 1 Y 1 A ARG 301 ? NH2 ? A ARG 68 NH2 48 1 Y 1 A LYS 304 ? CD ? A LYS 71 CD 49 1 Y 1 A LYS 304 ? CE ? A LYS 71 CE 50 1 Y 1 A LYS 304 ? NZ ? A LYS 71 NZ 51 1 Y 1 A GLU 312 ? CD ? A GLU 79 CD 52 1 Y 1 A GLU 312 ? OE1 ? A GLU 79 OE1 53 1 Y 1 A GLU 312 ? OE2 ? A GLU 79 OE2 54 1 Y 1 A LYS 314 ? CD ? A LYS 81 CD 55 1 Y 1 A LYS 314 ? CE ? A LYS 81 CE 56 1 Y 1 A LYS 314 ? NZ ? A LYS 81 NZ 57 1 Y 1 A ARG 317 ? CD ? A ARG 84 CD 58 1 Y 1 A ARG 317 ? NE ? A ARG 84 NE 59 1 Y 1 A ARG 317 ? CZ ? A ARG 84 CZ 60 1 Y 1 A ARG 317 ? NH1 ? A ARG 84 NH1 61 1 Y 1 A ARG 317 ? NH2 ? A ARG 84 NH2 62 1 Y 1 A LYS 318 ? CD ? A LYS 85 CD 63 1 Y 1 A LYS 318 ? CE ? A LYS 85 CE 64 1 Y 1 A LYS 318 ? NZ ? A LYS 85 NZ 65 1 Y 1 A GLU 325 ? CG ? A GLU 92 CG 66 1 Y 1 A GLU 325 ? CD ? A GLU 92 CD 67 1 Y 1 A GLU 325 ? OE1 ? A GLU 92 OE1 68 1 Y 1 A GLU 325 ? OE2 ? A GLU 92 OE2 69 1 Y 1 A GLU 326 ? CD ? A GLU 93 CD 70 1 Y 1 A GLU 326 ? OE1 ? A GLU 93 OE1 71 1 Y 1 A GLU 326 ? OE2 ? A GLU 93 OE2 72 1 Y 1 A LYS 335 ? CD ? A LYS 102 CD 73 1 Y 1 A LYS 335 ? CE ? A LYS 102 CE 74 1 Y 1 A LYS 335 ? NZ ? A LYS 102 NZ 75 1 Y 1 A LYS 372 ? CD ? A LYS 139 CD 76 1 Y 1 A LYS 372 ? CE ? A LYS 139 CE 77 1 Y 1 A LYS 372 ? NZ ? A LYS 139 NZ 78 1 Y 1 A ARG 382 ? CG ? A ARG 149 CG 79 1 Y 1 A ARG 382 ? CD ? A ARG 149 CD 80 1 Y 1 A ARG 382 ? NE ? A ARG 149 NE 81 1 Y 1 A ARG 382 ? CZ ? A ARG 149 CZ 82 1 Y 1 A ARG 382 ? NH1 ? A ARG 149 NH1 83 1 Y 1 A ARG 382 ? NH2 ? A ARG 149 NH2 84 1 Y 1 A HIS 383 ? ND1 ? A HIS 150 ND1 85 1 Y 1 A HIS 383 ? CD2 ? A HIS 150 CD2 86 1 Y 1 A HIS 383 ? CE1 ? A HIS 150 CE1 87 1 Y 1 A HIS 383 ? NE2 ? A HIS 150 NE2 88 1 Y 1 A LYS 386 ? CG ? A LYS 153 CG 89 1 Y 1 A LYS 386 ? CD ? A LYS 153 CD 90 1 Y 1 A LYS 386 ? CE ? A LYS 153 CE 91 1 Y 1 A LYS 386 ? NZ ? A LYS 153 NZ 92 1 Y 1 A ASP 388 ? OD1 ? A ASP 155 OD1 93 1 Y 1 A ASP 388 ? OD2 ? A ASP 155 OD2 94 1 Y 1 A LYS 390 ? CG ? A LYS 157 CG 95 1 Y 1 A LYS 390 ? CD ? A LYS 157 CD 96 1 Y 1 A LYS 390 ? CE ? A LYS 157 CE 97 1 Y 1 A LYS 390 ? NZ ? A LYS 157 NZ 98 1 Y 1 A GLU 391 ? CG ? A GLU 158 CG 99 1 Y 1 A GLU 391 ? CD ? A GLU 158 CD 100 1 Y 1 A GLU 391 ? OE1 ? A GLU 158 OE1 101 1 Y 1 A GLU 391 ? OE2 ? A GLU 158 OE2 102 1 Y 1 A LYS 425 ? CD ? A LYS 192 CD 103 1 Y 1 A LYS 425 ? CE ? A LYS 192 CE 104 1 Y 1 A LYS 425 ? NZ ? A LYS 192 NZ 105 1 Y 1 A ASP 445 ? CG ? A ASP 212 CG 106 1 Y 1 A ASP 445 ? OD1 ? A ASP 212 OD1 107 1 Y 1 A ASP 445 ? OD2 ? A ASP 212 OD2 108 1 Y 1 A SER 447 ? OG ? A SER 214 OG 109 1 Y 1 A VAL 448 ? CG1 ? A VAL 215 CG1 110 1 Y 1 A VAL 448 ? CG2 ? A VAL 215 CG2 111 1 Y 1 A GLU 449 ? CG ? A GLU 216 CG 112 1 Y 1 A GLU 449 ? CD ? A GLU 216 CD 113 1 Y 1 A GLU 449 ? OE1 ? A GLU 216 OE1 114 1 Y 1 A GLU 449 ? OE2 ? A GLU 216 OE2 115 1 Y 1 A ASP 450 ? CG ? A ASP 217 CG 116 1 Y 1 A ASP 450 ? OD1 ? A ASP 217 OD1 117 1 Y 1 A ASP 450 ? OD2 ? A ASP 217 OD2 118 1 Y 1 A SER 451 ? CA ? A SER 218 CA 119 1 Y 1 A SER 451 ? C ? A SER 218 C 120 1 Y 1 A SER 451 ? O ? A SER 218 O 121 1 Y 1 A SER 451 ? CB ? A SER 218 CB 122 1 Y 1 A SER 451 ? OG ? A SER 218 OG # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU 452 ? A GLU 219 2 1 Y 1 A LEU 453 ? A LEU 220 3 1 Y 1 A THR 454 ? A THR 221 4 1 Y 1 A PRO 455 ? A PRO 222 5 1 Y 1 A ILE 456 ? A ILE 223 6 1 Y 1 A ILE 457 ? A ILE 224 7 1 Y 1 A HIS 458 ? A HIS 225 8 1 Y 1 A ASP 459 ? A ASP 226 9 1 Y 1 A ASP 460 ? A ASP 227 10 1 Y 1 A GLU 461 ? A GLU 228 11 1 Y 1 A PHE 462 ? A PHE 229 12 1 Y 1 A SER 463 ? A SER 230 13 1 Y 1 A LYS 464 ? A LYS 231 14 1 Y 1 A ASN 465 ? A ASN 232 15 1 Y 1 A ALA 466 ? A ALA 233 16 1 Y 1 A LYS 467 ? A LYS 234 17 1 Y 1 A LEU 468 ? A LEU 235 18 1 Y 1 A ASP 469 ? A ASP 236 19 1 Y 1 A VAL 470 ? A VAL 237 20 1 Y 1 A LYS 471 ? A LYS 238 21 1 Y 1 A ALA 472 ? A ALA 239 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 GU4 O1 O N N 123 GU4 C1 C N S 124 GU4 O5 O N N 125 GU4 C5 C N R 126 GU4 C6 C N N 127 GU4 O6 O N N 128 GU4 S6 S N N 129 GU4 O22 O N N 130 GU4 O23 O N N 131 GU4 O21 O N N 132 GU4 C4 C N R 133 GU4 O4 O N N 134 GU4 S4 S N N 135 GU4 O25 O N N 136 GU4 O26 O N N 137 GU4 O24 O N N 138 GU4 C3 C N S 139 GU4 O3 O N N 140 GU4 S3 S N N 141 GU4 O28 O N N 142 GU4 O29 O N N 143 GU4 O27 O N N 144 GU4 C2 C N R 145 GU4 O2 O N N 146 GU4 S2 S N N 147 GU4 O11 O N N 148 GU4 O12 O N N 149 GU4 O10 O N N 150 GU4 HO1 H N N 151 GU4 H1 H N N 152 GU4 H5 H N N 153 GU4 H61 H N N 154 GU4 H62 H N N 155 GU4 H4 H N N 156 GU4 H3 H N N 157 GU4 H2 H N N 158 GU4 HO21 H N N 159 GU4 HO24 H N N 160 GU4 HO29 H N N 161 GU4 HO10 H N N 162 HIS N N N N 163 HIS CA C N S 164 HIS C C N N 165 HIS O O N N 166 HIS CB C N N 167 HIS CG C Y N 168 HIS ND1 N Y N 169 HIS CD2 C Y N 170 HIS CE1 C Y N 171 HIS NE2 N Y N 172 HIS OXT O N N 173 HIS H H N N 174 HIS H2 H N N 175 HIS HA H N N 176 HIS HB2 H N N 177 HIS HB3 H N N 178 HIS HD1 H N N 179 HIS HD2 H N N 180 HIS HE1 H N N 181 HIS HE2 H N N 182 HIS HXT H N N 183 HOH O O N N 184 HOH H1 H N N 185 HOH H2 H N N 186 ILE N N N N 187 ILE CA C N S 188 ILE C C N N 189 ILE O O N N 190 ILE CB C N S 191 ILE CG1 C N N 192 ILE CG2 C N N 193 ILE CD1 C N N 194 ILE OXT O N N 195 ILE H H N N 196 ILE H2 H N N 197 ILE HA H N N 198 ILE HB H N N 199 ILE HG12 H N N 200 ILE HG13 H N N 201 ILE HG21 H N N 202 ILE HG22 H N N 203 ILE HG23 H N N 204 ILE HD11 H N N 205 ILE HD12 H N N 206 ILE HD13 H N N 207 ILE HXT H N N 208 LEU N N N N 209 LEU CA C N S 210 LEU C C N N 211 LEU O O N N 212 LEU CB C N N 213 LEU CG C N N 214 LEU CD1 C N N 215 LEU CD2 C N N 216 LEU OXT O N N 217 LEU H H N N 218 LEU H2 H N N 219 LEU HA H N N 220 LEU HB2 H N N 221 LEU HB3 H N N 222 LEU HG H N N 223 LEU HD11 H N N 224 LEU HD12 H N N 225 LEU HD13 H N N 226 LEU HD21 H N N 227 LEU HD22 H N N 228 LEU HD23 H N N 229 LEU HXT H N N 230 LYS N N N N 231 LYS CA C N S 232 LYS C C N N 233 LYS O O N N 234 LYS CB C N N 235 LYS CG C N N 236 LYS CD C N N 237 LYS CE C N N 238 LYS NZ N N N 239 LYS OXT O N N 240 LYS H H N N 241 LYS H2 H N N 242 LYS HA H N N 243 LYS HB2 H N N 244 LYS HB3 H N N 245 LYS HG2 H N N 246 LYS HG3 H N N 247 LYS HD2 H N N 248 LYS HD3 H N N 249 LYS HE2 H N N 250 LYS HE3 H N N 251 LYS HZ1 H N N 252 LYS HZ2 H N N 253 LYS HZ3 H N N 254 LYS HXT H N N 255 MET N N N N 256 MET CA C N S 257 MET C C N N 258 MET O O N N 259 MET CB C N N 260 MET CG C N N 261 MET SD S N N 262 MET CE C N N 263 MET OXT O N N 264 MET H H N N 265 MET H2 H N N 266 MET HA H N N 267 MET HB2 H N N 268 MET HB3 H N N 269 MET HG2 H N N 270 MET HG3 H N N 271 MET HE1 H N N 272 MET HE2 H N N 273 MET HE3 H N N 274 MET HXT H N N 275 PHE N N N N 276 PHE CA C N S 277 PHE C C N N 278 PHE O O N N 279 PHE CB C N N 280 PHE CG C Y N 281 PHE CD1 C Y N 282 PHE CD2 C Y N 283 PHE CE1 C Y N 284 PHE CE2 C Y N 285 PHE CZ C Y N 286 PHE OXT O N N 287 PHE H H N N 288 PHE H2 H N N 289 PHE HA H N N 290 PHE HB2 H N N 291 PHE HB3 H N N 292 PHE HD1 H N N 293 PHE HD2 H N N 294 PHE HE1 H N N 295 PHE HE2 H N N 296 PHE HZ H N N 297 PHE HXT H N N 298 PRO N N N N 299 PRO CA C N S 300 PRO C C N N 301 PRO O O N N 302 PRO CB C N N 303 PRO CG C N N 304 PRO CD C N N 305 PRO OXT O N N 306 PRO H H N N 307 PRO HA H N N 308 PRO HB2 H N N 309 PRO HB3 H N N 310 PRO HG2 H N N 311 PRO HG3 H N N 312 PRO HD2 H N N 313 PRO HD3 H N N 314 PRO HXT H N N 315 SER N N N N 316 SER CA C N S 317 SER C C N N 318 SER O O N N 319 SER CB C N N 320 SER OG O N N 321 SER OXT O N N 322 SER H H N N 323 SER H2 H N N 324 SER HA H N N 325 SER HB2 H N N 326 SER HB3 H N N 327 SER HG H N N 328 SER HXT H N N 329 THR N N N N 330 THR CA C N S 331 THR C C N N 332 THR O O N N 333 THR CB C N R 334 THR OG1 O N N 335 THR CG2 C N N 336 THR OXT O N N 337 THR H H N N 338 THR H2 H N N 339 THR HA H N N 340 THR HB H N N 341 THR HG1 H N N 342 THR HG21 H N N 343 THR HG22 H N N 344 THR HG23 H N N 345 THR HXT H N N 346 TRP N N N N 347 TRP CA C N S 348 TRP C C N N 349 TRP O O N N 350 TRP CB C N N 351 TRP CG C Y N 352 TRP CD1 C Y N 353 TRP CD2 C Y N 354 TRP NE1 N Y N 355 TRP CE2 C Y N 356 TRP CE3 C Y N 357 TRP CZ2 C Y N 358 TRP CZ3 C Y N 359 TRP CH2 C Y N 360 TRP OXT O N N 361 TRP H H N N 362 TRP H2 H N N 363 TRP HA H N N 364 TRP HB2 H N N 365 TRP HB3 H N N 366 TRP HD1 H N N 367 TRP HE1 H N N 368 TRP HE3 H N N 369 TRP HZ2 H N N 370 TRP HZ3 H N N 371 TRP HH2 H N N 372 TRP HXT H N N 373 TYR N N N N 374 TYR CA C N S 375 TYR C C N N 376 TYR O O N N 377 TYR CB C N N 378 TYR CG C Y N 379 TYR CD1 C Y N 380 TYR CD2 C Y N 381 TYR CE1 C Y N 382 TYR CE2 C Y N 383 TYR CZ C Y N 384 TYR OH O N N 385 TYR OXT O N N 386 TYR H H N N 387 TYR H2 H N N 388 TYR HA H N N 389 TYR HB2 H N N 390 TYR HB3 H N N 391 TYR HD1 H N N 392 TYR HD2 H N N 393 TYR HE1 H N N 394 TYR HE2 H N N 395 TYR HH H N N 396 TYR HXT H N N 397 VAL N N N N 398 VAL CA C N S 399 VAL C C N N 400 VAL O O N N 401 VAL CB C N N 402 VAL CG1 C N N 403 VAL CG2 C N N 404 VAL OXT O N N 405 VAL H H N N 406 VAL H2 H N N 407 VAL HA H N N 408 VAL HB H N N 409 VAL HG11 H N N 410 VAL HG12 H N N 411 VAL HG13 H N N 412 VAL HG21 H N N 413 VAL HG22 H N N 414 VAL HG23 H N N 415 VAL HXT H N N 416 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 GU4 O1 C1 sing N N 116 GU4 O1 HO1 sing N N 117 GU4 C1 O5 sing N N 118 GU4 C1 C2 sing N N 119 GU4 C1 H1 sing N N 120 GU4 O5 C5 sing N N 121 GU4 C5 C6 sing N N 122 GU4 C5 C4 sing N N 123 GU4 C5 H5 sing N N 124 GU4 C6 O6 sing N N 125 GU4 C6 H61 sing N N 126 GU4 C6 H62 sing N N 127 GU4 O6 S6 sing N N 128 GU4 S6 O22 doub N N 129 GU4 S6 O23 doub N N 130 GU4 S6 O21 sing N N 131 GU4 C4 O4 sing N N 132 GU4 C4 C3 sing N N 133 GU4 C4 H4 sing N N 134 GU4 O4 S4 sing N N 135 GU4 S4 O25 doub N N 136 GU4 S4 O26 doub N N 137 GU4 S4 O24 sing N N 138 GU4 C3 O3 sing N N 139 GU4 C3 C2 sing N N 140 GU4 C3 H3 sing N N 141 GU4 O3 S3 sing N N 142 GU4 S3 O28 doub N N 143 GU4 S3 O29 sing N N 144 GU4 S3 O27 doub N N 145 GU4 C2 O2 sing N N 146 GU4 C2 H2 sing N N 147 GU4 O2 S2 sing N N 148 GU4 S2 O11 doub N N 149 GU4 S2 O12 doub N N 150 GU4 S2 O10 sing N N 151 GU4 O21 HO21 sing N N 152 GU4 O24 HO24 sing N N 153 GU4 O29 HO29 sing N N 154 GU4 O10 HO10 sing N N 155 HIS N CA sing N N 156 HIS N H sing N N 157 HIS N H2 sing N N 158 HIS CA C sing N N 159 HIS CA CB sing N N 160 HIS CA HA sing N N 161 HIS C O doub N N 162 HIS C OXT sing N N 163 HIS CB CG sing N N 164 HIS CB HB2 sing N N 165 HIS CB HB3 sing N N 166 HIS CG ND1 sing Y N 167 HIS CG CD2 doub Y N 168 HIS ND1 CE1 doub Y N 169 HIS ND1 HD1 sing N N 170 HIS CD2 NE2 sing Y N 171 HIS CD2 HD2 sing N N 172 HIS CE1 NE2 sing Y N 173 HIS CE1 HE1 sing N N 174 HIS NE2 HE2 sing N N 175 HIS OXT HXT sing N N 176 HOH O H1 sing N N 177 HOH O H2 sing N N 178 ILE N CA sing N N 179 ILE N H sing N N 180 ILE N H2 sing N N 181 ILE CA C sing N N 182 ILE CA CB sing N N 183 ILE CA HA sing N N 184 ILE C O doub N N 185 ILE C OXT sing N N 186 ILE CB CG1 sing N N 187 ILE CB CG2 sing N N 188 ILE CB HB sing N N 189 ILE CG1 CD1 sing N N 190 ILE CG1 HG12 sing N N 191 ILE CG1 HG13 sing N N 192 ILE CG2 HG21 sing N N 193 ILE CG2 HG22 sing N N 194 ILE CG2 HG23 sing N N 195 ILE CD1 HD11 sing N N 196 ILE CD1 HD12 sing N N 197 ILE CD1 HD13 sing N N 198 ILE OXT HXT sing N N 199 LEU N CA sing N N 200 LEU N H sing N N 201 LEU N H2 sing N N 202 LEU CA C sing N N 203 LEU CA CB sing N N 204 LEU CA HA sing N N 205 LEU C O doub N N 206 LEU C OXT sing N N 207 LEU CB CG sing N N 208 LEU CB HB2 sing N N 209 LEU CB HB3 sing N N 210 LEU CG CD1 sing N N 211 LEU CG CD2 sing N N 212 LEU CG HG sing N N 213 LEU CD1 HD11 sing N N 214 LEU CD1 HD12 sing N N 215 LEU CD1 HD13 sing N N 216 LEU CD2 HD21 sing N N 217 LEU CD2 HD22 sing N N 218 LEU CD2 HD23 sing N N 219 LEU OXT HXT sing N N 220 LYS N CA sing N N 221 LYS N H sing N N 222 LYS N H2 sing N N 223 LYS CA C sing N N 224 LYS CA CB sing N N 225 LYS CA HA sing N N 226 LYS C O doub N N 227 LYS C OXT sing N N 228 LYS CB CG sing N N 229 LYS CB HB2 sing N N 230 LYS CB HB3 sing N N 231 LYS CG CD sing N N 232 LYS CG HG2 sing N N 233 LYS CG HG3 sing N N 234 LYS CD CE sing N N 235 LYS CD HD2 sing N N 236 LYS CD HD3 sing N N 237 LYS CE NZ sing N N 238 LYS CE HE2 sing N N 239 LYS CE HE3 sing N N 240 LYS NZ HZ1 sing N N 241 LYS NZ HZ2 sing N N 242 LYS NZ HZ3 sing N N 243 LYS OXT HXT sing N N 244 MET N CA sing N N 245 MET N H sing N N 246 MET N H2 sing N N 247 MET CA C sing N N 248 MET CA CB sing N N 249 MET CA HA sing N N 250 MET C O doub N N 251 MET C OXT sing N N 252 MET CB CG sing N N 253 MET CB HB2 sing N N 254 MET CB HB3 sing N N 255 MET CG SD sing N N 256 MET CG HG2 sing N N 257 MET CG HG3 sing N N 258 MET SD CE sing N N 259 MET CE HE1 sing N N 260 MET CE HE2 sing N N 261 MET CE HE3 sing N N 262 MET OXT HXT sing N N 263 PHE N CA sing N N 264 PHE N H sing N N 265 PHE N H2 sing N N 266 PHE CA C sing N N 267 PHE CA CB sing N N 268 PHE CA HA sing N N 269 PHE C O doub N N 270 PHE C OXT sing N N 271 PHE CB CG sing N N 272 PHE CB HB2 sing N N 273 PHE CB HB3 sing N N 274 PHE CG CD1 doub Y N 275 PHE CG CD2 sing Y N 276 PHE CD1 CE1 sing Y N 277 PHE CD1 HD1 sing N N 278 PHE CD2 CE2 doub Y N 279 PHE CD2 HD2 sing N N 280 PHE CE1 CZ doub Y N 281 PHE CE1 HE1 sing N N 282 PHE CE2 CZ sing Y N 283 PHE CE2 HE2 sing N N 284 PHE CZ HZ sing N N 285 PHE OXT HXT sing N N 286 PRO N CA sing N N 287 PRO N CD sing N N 288 PRO N H sing N N 289 PRO CA C sing N N 290 PRO CA CB sing N N 291 PRO CA HA sing N N 292 PRO C O doub N N 293 PRO C OXT sing N N 294 PRO CB CG sing N N 295 PRO CB HB2 sing N N 296 PRO CB HB3 sing N N 297 PRO CG CD sing N N 298 PRO CG HG2 sing N N 299 PRO CG HG3 sing N N 300 PRO CD HD2 sing N N 301 PRO CD HD3 sing N N 302 PRO OXT HXT sing N N 303 SER N CA sing N N 304 SER N H sing N N 305 SER N H2 sing N N 306 SER CA C sing N N 307 SER CA CB sing N N 308 SER CA HA sing N N 309 SER C O doub N N 310 SER C OXT sing N N 311 SER CB OG sing N N 312 SER CB HB2 sing N N 313 SER CB HB3 sing N N 314 SER OG HG sing N N 315 SER OXT HXT sing N N 316 THR N CA sing N N 317 THR N H sing N N 318 THR N H2 sing N N 319 THR CA C sing N N 320 THR CA CB sing N N 321 THR CA HA sing N N 322 THR C O doub N N 323 THR C OXT sing N N 324 THR CB OG1 sing N N 325 THR CB CG2 sing N N 326 THR CB HB sing N N 327 THR OG1 HG1 sing N N 328 THR CG2 HG21 sing N N 329 THR CG2 HG22 sing N N 330 THR CG2 HG23 sing N N 331 THR OXT HXT sing N N 332 TRP N CA sing N N 333 TRP N H sing N N 334 TRP N H2 sing N N 335 TRP CA C sing N N 336 TRP CA CB sing N N 337 TRP CA HA sing N N 338 TRP C O doub N N 339 TRP C OXT sing N N 340 TRP CB CG sing N N 341 TRP CB HB2 sing N N 342 TRP CB HB3 sing N N 343 TRP CG CD1 doub Y N 344 TRP CG CD2 sing Y N 345 TRP CD1 NE1 sing Y N 346 TRP CD1 HD1 sing N N 347 TRP CD2 CE2 doub Y N 348 TRP CD2 CE3 sing Y N 349 TRP NE1 CE2 sing Y N 350 TRP NE1 HE1 sing N N 351 TRP CE2 CZ2 sing Y N 352 TRP CE3 CZ3 doub Y N 353 TRP CE3 HE3 sing N N 354 TRP CZ2 CH2 doub Y N 355 TRP CZ2 HZ2 sing N N 356 TRP CZ3 CH2 sing Y N 357 TRP CZ3 HZ3 sing N N 358 TRP CH2 HH2 sing N N 359 TRP OXT HXT sing N N 360 TYR N CA sing N N 361 TYR N H sing N N 362 TYR N H2 sing N N 363 TYR CA C sing N N 364 TYR CA CB sing N N 365 TYR CA HA sing N N 366 TYR C O doub N N 367 TYR C OXT sing N N 368 TYR CB CG sing N N 369 TYR CB HB2 sing N N 370 TYR CB HB3 sing N N 371 TYR CG CD1 doub Y N 372 TYR CG CD2 sing Y N 373 TYR CD1 CE1 sing Y N 374 TYR CD1 HD1 sing N N 375 TYR CD2 CE2 doub Y N 376 TYR CD2 HD2 sing N N 377 TYR CE1 CZ doub Y N 378 TYR CE1 HE1 sing N N 379 TYR CE2 CZ sing Y N 380 TYR CE2 HE2 sing N N 381 TYR CZ OH sing N N 382 TYR OH HH sing N N 383 TYR OXT HXT sing N N 384 VAL N CA sing N N 385 VAL N H sing N N 386 VAL N H2 sing N N 387 VAL CA C sing N N 388 VAL CA CB sing N N 389 VAL CA HA sing N N 390 VAL C O doub N N 391 VAL C OXT sing N N 392 VAL CB CG1 sing N N 393 VAL CB CG2 sing N N 394 VAL CB HB sing N N 395 VAL CG1 HG11 sing N N 396 VAL CG1 HG12 sing N N 397 VAL CG1 HG13 sing N N 398 VAL CG2 HG21 sing N N 399 VAL CG2 HG22 sing N N 400 VAL CG2 HG23 sing N N 401 VAL OXT HXT sing N N 402 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GU4 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 'DGlcp[2S,3S,4S,6S]a' GU4 'COMMON NAME' GMML 1.0 2-sulfo-3-sulfo-4-sulfo-6-sulfo-a-D-glucopyranose GU4 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Glcp2SO33SO34SO36SO3 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 2,3,4,6-tetra-O-sulfonato-alpha-D-glucopyranose GU4 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3K66 _pdbx_initial_refinement_model.details 'PDB entry 3K66' #