HEADER CELL ADHESION 08-OCT-09 3K6D TITLE CRYSTAL STRUCTURE OF XENOPUS LAEVIS T-CADHERIN EC1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: T-CADHERIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: EC1 DOMAIN: UNP RESIDUES 136-233; COMPND 5 SYNONYM: LOC495024 PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 3 ORGANISM_COMMON: FROG; SOURCE 4 ORGANISM_TAXID: 8355; SOURCE 5 GENE: CDH13, LOC495024; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS T-CADHERIN, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR L.SHAPIRO,C.CIATTO REVDAT 3 21-FEB-24 3K6D 1 REMARK SEQADV REVDAT 2 16-MAR-10 3K6D 1 JRNL REVDAT 1 02-MAR-10 3K6D 0 JRNL AUTH C.CIATTO,F.BAHNA,N.ZAMPIERI,H.C.VANSTEENHOUSE,P.S.KATSAMBA, JRNL AUTH 2 G.AHLSEN,O.J.HARRISON,J.BRASCH,X.JIN,S.POSY,J.VENDOME, JRNL AUTH 3 B.RANSCHT,T.M.JESSELL,B.HONIG,L.SHAPIRO JRNL TITL T-CADHERIN STRUCTURES REVEAL A NOVEL ADHESIVE BINDING JRNL TITL 2 MECHANISM JRNL REF NAT.STRUCT.MOL.BIOL. V. 17 339 2010 JRNL REFN ISSN 1545-9993 JRNL PMID 20190755 JRNL DOI 10.1038/NSMB.1781 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 17486 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.930 REMARK 3 FREE R VALUE TEST SET COUNT : 1736 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.9020 - 5.6990 0.88 486 0 0.2380 0.0000 REMARK 3 2 5.6990 - 4.5300 0.90 497 0 0.2000 0.0000 REMARK 3 3 4.5300 - 3.9590 0.89 488 0 0.1730 0.0000 REMARK 3 4 3.9590 - 3.5980 0.90 484 0 0.2030 0.0000 REMARK 3 5 3.5980 - 3.3410 0.89 497 0 0.2020 0.0000 REMARK 3 6 3.3410 - 3.1440 0.91 486 0 0.2180 0.0000 REMARK 3 7 3.1440 - 2.9870 0.90 502 0 0.2230 0.0000 REMARK 3 8 2.9870 - 2.8570 0.90 485 0 0.2730 0.0000 REMARK 3 9 2.8570 - 2.7470 0.90 495 0 0.2300 0.0000 REMARK 3 10 2.7470 - 2.6520 0.91 493 0 0.2370 0.0000 REMARK 3 11 2.6520 - 2.5690 0.90 504 0 0.2380 0.0000 REMARK 3 12 2.5690 - 2.4960 0.90 492 0 0.2280 0.0000 REMARK 3 13 2.4960 - 2.4300 0.90 484 0 0.2460 0.0000 REMARK 3 14 2.4300 - 2.3710 0.91 495 0 0.2160 0.0000 REMARK 3 15 2.3710 - 2.3170 0.91 502 0 0.2260 0.0000 REMARK 3 16 2.3170 - 2.2680 0.90 483 0 0.2310 0.0000 REMARK 3 17 2.2680 - 2.2220 0.90 500 0 0.2270 0.0000 REMARK 3 18 2.2220 - 2.1810 0.91 488 0 0.2300 0.0000 REMARK 3 19 2.1810 - 2.1420 0.90 473 0 0.2070 0.0000 REMARK 3 20 2.1420 - 2.1050 0.90 511 0 0.2470 0.0000 REMARK 3 21 2.1050 - 2.0710 0.90 497 0 0.2360 0.0000 REMARK 3 22 2.0710 - 2.0390 0.90 496 0 0.2320 0.0000 REMARK 3 23 2.0390 - 2.0100 0.90 485 0 0.2430 0.0000 REMARK 3 24 2.0100 - 1.9810 0.90 482 0 0.2520 0.0000 REMARK 3 25 1.9810 - 1.9540 0.90 503 0 0.2130 0.0000 REMARK 3 26 1.9540 - 1.9290 0.90 492 0 0.2270 0.0000 REMARK 3 27 1.9290 - 1.9050 0.90 498 0 0.2490 0.0000 REMARK 3 28 1.9050 - 1.8820 0.91 474 0 0.2460 0.0000 REMARK 3 29 1.8820 - 1.8600 0.90 512 0 0.2360 0.0000 REMARK 3 30 1.8600 - 1.8390 0.90 473 0 0.2390 0.0000 REMARK 3 31 1.8390 - 1.8190 0.90 499 0 0.2620 0.0000 REMARK 3 32 1.8190 - 1.8000 0.90 494 0 0.2730 0.0000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 68.29 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.52 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.86000 REMARK 3 B22 (A**2) : 0.86000 REMARK 3 B33 (A**2) : -1.72000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 NULL REMARK 3 ANGLE : 1.916 NULL REMARK 3 CHIRALITY : 0.114 NULL REMARK 3 PLANARITY : 0.008 NULL REMARK 3 DIHEDRAL : 18.293 NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3K6D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000055602. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : CRYOGENICALLY COOLED DOUBLE REMARK 200 CRYSTAL SI(111) REMARK 200 OPTICS : HORIZONTAL FOCUSING SAGITALLY REMARK 200 BENT SECOND MONO CRYSTAL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17500 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.40 REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.20900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM ZN ACETATE, 20 % PEG 3350, PH REMARK 280 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.45500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 39.45500 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.28850 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.45500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 15.64425 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.45500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 46.93275 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.45500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 46.93275 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.45500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 15.64425 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 39.45500 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 39.45500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 31.28850 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 39.45500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 39.45500 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 31.28850 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 39.45500 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 46.93275 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 39.45500 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 15.64425 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 39.45500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 15.64425 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 39.45500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 46.93275 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 39.45500 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 39.45500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 31.28850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 ZN ZN A 201 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 101 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 106 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 116 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 138 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 142 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 173 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 79 CG GLU A 88 1.62 REMARK 500 O HOH A 134 O HOH A 177 2.15 REMARK 500 O HOH A 123 O HOH A 146 2.18 REMARK 500 NH2 ARG A 29 O ASN A 55 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 130 O HOH A 130 8556 2.07 REMARK 500 O HOH A 202 O HOH A 202 6555 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 14 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 27 -57.59 77.21 REMARK 500 VAL A 42 -83.33 -122.28 REMARK 500 ILE A 87 -63.56 -106.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 11 OE2 REMARK 620 2 ASP A 99 OD1 88.9 REMARK 620 3 ASP A 99 OXT 94.2 85.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3K6F RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MOUSE T-CADHERIN EC1 REMARK 900 RELATED ID: 3K6I RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CHICKEN T-CADHERIN EC1 DBREF 3K6D A 2 99 UNP Q5XHE3 Q5XHE3_XENLA 136 233 SEQADV 3K6D SER A 1 UNP Q5XHE3 EXPRESSION TAG SEQRES 1 A 99 SER ILE VAL ALA PRO SER ILE SER ILE PRO GLU ASN GLN SEQRES 2 A 99 ARG ILE PRO PHE PRO LYS ILE VAL GLY ARG VAL VAL VAL SEQRES 3 A 99 SER ASP ARG ILE PRO GLY SER LYS ILE LYS LEU TYR GLY SEQRES 4 A 99 LYS GLY VAL ASP GLN GLU PRO LYS GLY ILE PHE LYS ILE SEQRES 5 A 99 ASN GLU ASN SER GLY GLU VAL SER VAL THR LYS ALA LEU SEQRES 6 A 99 ASP ARG GLU ALA ILE PRO SER TYR GLN LEU GLN VAL GLU SEQRES 7 A 99 THR THR ASP GLU ASN GLY LYS THR ILE GLU GLY PRO VAL SEQRES 8 A 99 ASP LEU GLU ILE LEU VAL ILE ASP HET ZN A 201 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ FORMUL 3 HOH *102(H2 O) SHEET 1 A 4 ILE A 7 PRO A 10 0 SHEET 2 A 4 THR A 86 ILE A 98 1 O LEU A 96 N ILE A 7 SHEET 3 A 4 SER A 72 THR A 80 -1 N TYR A 73 O ILE A 95 SHEET 4 A 4 LYS A 34 TYR A 38 -1 N LYS A 36 O GLU A 78 SHEET 1 B 3 LYS A 19 ARG A 23 0 SHEET 2 B 3 GLU A 58 VAL A 61 -1 O VAL A 59 N GLY A 22 SHEET 3 B 3 PHE A 50 ILE A 52 -1 N LYS A 51 O SER A 60 LINK OE2 GLU A 11 ZN ZN A 201 1555 1555 2.36 LINK OD1 ASP A 99 ZN ZN A 201 1555 1555 2.25 LINK OXT ASP A 99 ZN ZN A 201 1555 1555 2.35 CISPEP 1 ILE A 15 PRO A 16 0 9.01 CISPEP 2 PHE A 17 PRO A 18 0 0.90 CISPEP 3 PRO A 31 GLY A 32 0 -13.54 CISPEP 4 GLU A 45 PRO A 46 0 0.84 CISPEP 5 GLY A 89 PRO A 90 0 5.05 SITE 1 AC1 2 GLU A 11 ASP A 99 CRYST1 78.910 78.910 62.577 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012673 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012673 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015980 0.00000