HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 08-OCT-09 3K6E OBSLTE 17-MAR-21 3K6E 7LZG TITLE CRYSTAL STRUCTURE OF CBS DOMAIN PROTEIN FROM STREPTOCOCCUS PNEUMONIAE TITLE 2 TIGR4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CBS DOMAIN PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 1313; SOURCE 4 STRAIN: TIGR4; SOURCE 5 ATCC: BAA-334; SOURCE 6 GENE: SP_1878; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) DERIVATIVE; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS CBS DOMAIN PROTEIN, SP1878, STREPTOCOCCUS PNEUMONIAE TIGR4, KEYWDS 2 STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST KEYWDS 3 CENTER FOR STRUCTURAL GENOMICS, MCSG, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,M.ZHOU,J.ABDULLAH,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 4 17-MAR-21 3K6E 1 OBSLTE REMARK SEQADV LINK REVDAT 3 01-NOV-17 3K6E 1 REMARK REVDAT 2 13-JUL-11 3K6E 1 VERSN REVDAT 1 27-OCT-09 3K6E 0 SPRSDE 27-OCT-09 3K6E 3CTU JRNL AUTH C.CHANG,M.ZHOU,J.ABDULLAH,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF CBS DOMAIN PROTEIN FROM STREPTOCOCCUS JRNL TITL 2 PNEUMONIAE TIGR4 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 10820 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 520 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.81 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.88 REMARK 3 REFLECTION IN BIN (WORKING SET) : 669 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.3010 REMARK 3 BIN FREE R VALUE SET COUNT : 42 REMARK 3 BIN FREE R VALUE : 0.3770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2334 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 13 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 77.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.72000 REMARK 3 B22 (A**2) : -4.60000 REMARK 3 B33 (A**2) : -2.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.056 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.381 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.346 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 39.049 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2375 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3226 ; 1.463 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 295 ; 6.011 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 103 ;35.580 ;25.728 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 424 ;20.849 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;22.309 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 401 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1719 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1485 ; 0.594 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2425 ; 1.216 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 890 ; 2.187 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 801 ; 3.673 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 22 REMARK 3 RESIDUE RANGE : A 123 A 143 REMARK 3 ORIGIN FOR THE GROUP (A): 20.4383 48.1990 82.4195 REMARK 3 T TENSOR REMARK 3 T11: 0.4002 T22: 0.2567 REMARK 3 T33: 0.1167 T12: -0.0156 REMARK 3 T13: 0.0910 T23: 0.0677 REMARK 3 L TENSOR REMARK 3 L11: -0.4796 L22: 15.1615 REMARK 3 L33: 7.7690 L12: -1.2126 REMARK 3 L13: 0.2706 L23: -8.1341 REMARK 3 S TENSOR REMARK 3 S11: -0.1791 S12: -0.2846 S13: 0.0634 REMARK 3 S21: 1.5312 S22: 0.2143 S23: -0.5081 REMARK 3 S31: -1.1909 S32: 0.2262 S33: -0.0351 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 23 A 92 REMARK 3 ORIGIN FOR THE GROUP (A): 14.8651 64.9336 59.9145 REMARK 3 T TENSOR REMARK 3 T11: 0.0804 T22: 0.0606 REMARK 3 T33: 0.1839 T12: -0.0083 REMARK 3 T13: -0.0186 T23: 0.0776 REMARK 3 L TENSOR REMARK 3 L11: 3.8132 L22: 5.3561 REMARK 3 L33: 8.0112 L12: -1.0985 REMARK 3 L13: 0.2827 L23: -1.2813 REMARK 3 S TENSOR REMARK 3 S11: 0.0636 S12: -0.1184 S13: -0.1801 REMARK 3 S21: 0.5046 S22: 0.0788 S23: 0.2306 REMARK 3 S31: -0.4110 S32: -0.1070 S33: -0.1424 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 93 A 122 REMARK 3 ORIGIN FOR THE GROUP (A): 10.7615 53.5882 77.1889 REMARK 3 T TENSOR REMARK 3 T11: 0.3952 T22: 0.2275 REMARK 3 T33: 0.4785 T12: 0.2458 REMARK 3 T13: 0.3717 T23: 0.3887 REMARK 3 L TENSOR REMARK 3 L11: 10.9690 L22: 10.3317 REMARK 3 L33: 9.0657 L12: 0.5046 REMARK 3 L13: 2.0441 L23: -10.6284 REMARK 3 S TENSOR REMARK 3 S11: -0.1721 S12: -0.2979 S13: -0.4575 REMARK 3 S21: 1.3768 S22: 1.2848 S23: 1.4476 REMARK 3 S31: -0.9565 S32: -0.9136 S33: -1.1127 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -1 B 22 REMARK 3 RESIDUE RANGE : B 123 B 143 REMARK 3 ORIGIN FOR THE GROUP (A): 22.1519 35.3410 72.5096 REMARK 3 T TENSOR REMARK 3 T11: 0.1542 T22: 0.0841 REMARK 3 T33: 0.1886 T12: -0.0459 REMARK 3 T13: 0.0166 T23: 0.0569 REMARK 3 L TENSOR REMARK 3 L11: 1.0007 L22: 6.8071 REMARK 3 L33: 12.0367 L12: 0.4005 REMARK 3 L13: -4.0253 L23: -5.2730 REMARK 3 S TENSOR REMARK 3 S11: -0.1514 S12: 0.1096 S13: -0.1772 REMARK 3 S21: -0.4419 S22: -0.2329 S23: -0.2011 REMARK 3 S31: 0.5714 S32: -0.1936 S33: 0.3843 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 23 B 92 REMARK 3 ORIGIN FOR THE GROUP (A): 27.8076 51.7037 49.9967 REMARK 3 T TENSOR REMARK 3 T11: 0.0614 T22: 0.1576 REMARK 3 T33: 0.0410 T12: -0.0664 REMARK 3 T13: -0.0046 T23: 0.0061 REMARK 3 L TENSOR REMARK 3 L11: 5.0621 L22: 8.9650 REMARK 3 L33: 6.5816 L12: 0.9802 REMARK 3 L13: -4.0947 L23: -2.8401 REMARK 3 S TENSOR REMARK 3 S11: -0.3709 S12: 0.0815 S13: 0.0376 REMARK 3 S21: -0.3569 S22: 0.2853 S23: 0.1213 REMARK 3 S31: 0.5375 S32: -0.3109 S33: 0.0856 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 93 B 122 REMARK 3 ORIGIN FOR THE GROUP (A): 32.5995 39.5096 66.7200 REMARK 3 T TENSOR REMARK 3 T11: 0.1188 T22: 0.1249 REMARK 3 T33: 0.2811 T12: 0.0528 REMARK 3 T13: 0.0662 T23: 0.1920 REMARK 3 L TENSOR REMARK 3 L11: 17.6179 L22: 7.3230 REMARK 3 L33: 17.6250 L12: -4.1234 REMARK 3 L13: -5.4238 L23: -1.8180 REMARK 3 S TENSOR REMARK 3 S11: 0.0775 S12: -0.4764 S13: 0.6988 REMARK 3 S21: -0.6991 S22: -0.2266 S23: -0.9106 REMARK 3 S31: 0.7960 S32: 0.8952 S33: 0.1491 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3K6E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000055603. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-FEB-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97933 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10852 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 9.200 REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 35.5200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.1 REMARK 200 DATA REDUNDANCY IN SHELL : 8.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.230 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, SHELXD, MLPHARE, DM, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4 M NA/K PHOSPHATE, PH 5.6, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.60950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.80100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.58750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.80100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.60950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.58750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 54 REMARK 465 PHE A 144 REMARK 465 SER A 145 REMARK 465 LYS A 146 REMARK 465 GLU A 147 REMARK 465 TYR A 148 REMARK 465 GLU A 149 REMARK 465 ILE A 150 REMARK 465 ARG A 151 REMARK 465 CYS A 152 REMARK 465 GLN A 153 REMARK 465 SER B -2 REMARK 465 CYS B 152 REMARK 465 GLN B 153 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 151 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 16 22.26 -75.78 REMARK 500 LEU A 24 121.80 162.93 REMARK 500 THR A 52 -115.93 -109.85 REMARK 500 ASP A 92 41.07 -82.84 REMARK 500 ASP A 99 48.73 -105.53 REMARK 500 ASP A 119 151.05 -41.98 REMARK 500 ALA A 120 15.08 -67.67 REMARK 500 LYS B 22 -37.93 -26.17 REMARK 500 GLU B 54 31.42 -93.38 REMARK 500 PRO B 98 2.97 -66.16 REMARK 500 GLU B 112 -164.25 -117.55 REMARK 500 ALA B 120 -6.45 -57.40 REMARK 500 LYS B 146 146.13 -35.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 154 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC80633 RELATED DB: TARGETDB DBREF 3K6E A 1 153 UNP Q9EUQ9 Q9EUQ9_STRPN 1 153 DBREF 3K6E B 1 153 UNP Q9EUQ9 Q9EUQ9_STRPN 1 153 SEQADV 3K6E SER A -2 UNP Q9EUQ9 EXPRESSION TAG SEQADV 3K6E ASN A -1 UNP Q9EUQ9 EXPRESSION TAG SEQADV 3K6E ALA A 0 UNP Q9EUQ9 EXPRESSION TAG SEQADV 3K6E SER B -2 UNP Q9EUQ9 EXPRESSION TAG SEQADV 3K6E ASN B -1 UNP Q9EUQ9 EXPRESSION TAG SEQADV 3K6E ALA B 0 UNP Q9EUQ9 EXPRESSION TAG SEQRES 1 A 156 SER ASN ALA MSE ILE ALA LYS GLU PHE GLU THR PHE LEU SEQRES 2 A 156 LEU GLY GLN GLU GLU THR PHE LEU THR PRO ALA LYS ASN SEQRES 3 A 156 LEU ALA VAL LEU ILE ASP THR HIS ASN ALA ASP HIS ALA SEQRES 4 A 156 THR LEU LEU LEU SER GLN MSE THR TYR THR ARG VAL PRO SEQRES 5 A 156 VAL VAL THR ASP GLU LYS GLN PHE VAL GLY THR ILE GLY SEQRES 6 A 156 LEU ARG ASP ILE MSE ALA TYR GLN MSE GLU HIS ASP LEU SEQRES 7 A 156 SER GLN GLU ILE MSE ALA ASP THR ASP ILE VAL HIS MSE SEQRES 8 A 156 THR LYS THR ASP VAL ALA VAL VAL SER PRO ASP PHE THR SEQRES 9 A 156 ILE THR GLU VAL LEU HIS LYS LEU VAL ASP GLU SER PHE SEQRES 10 A 156 LEU PRO VAL VAL ASP ALA GLU GLY ILE PHE GLN GLY ILE SEQRES 11 A 156 ILE THR ARG LYS SER ILE LEU LYS ALA VAL ASN ALA LEU SEQRES 12 A 156 LEU HIS ASP PHE SER LYS GLU TYR GLU ILE ARG CYS GLN SEQRES 1 B 156 SER ASN ALA MSE ILE ALA LYS GLU PHE GLU THR PHE LEU SEQRES 2 B 156 LEU GLY GLN GLU GLU THR PHE LEU THR PRO ALA LYS ASN SEQRES 3 B 156 LEU ALA VAL LEU ILE ASP THR HIS ASN ALA ASP HIS ALA SEQRES 4 B 156 THR LEU LEU LEU SER GLN MSE THR TYR THR ARG VAL PRO SEQRES 5 B 156 VAL VAL THR ASP GLU LYS GLN PHE VAL GLY THR ILE GLY SEQRES 6 B 156 LEU ARG ASP ILE MSE ALA TYR GLN MSE GLU HIS ASP LEU SEQRES 7 B 156 SER GLN GLU ILE MSE ALA ASP THR ASP ILE VAL HIS MSE SEQRES 8 B 156 THR LYS THR ASP VAL ALA VAL VAL SER PRO ASP PHE THR SEQRES 9 B 156 ILE THR GLU VAL LEU HIS LYS LEU VAL ASP GLU SER PHE SEQRES 10 B 156 LEU PRO VAL VAL ASP ALA GLU GLY ILE PHE GLN GLY ILE SEQRES 11 B 156 ILE THR ARG LYS SER ILE LEU LYS ALA VAL ASN ALA LEU SEQRES 12 B 156 LEU HIS ASP PHE SER LYS GLU TYR GLU ILE ARG CYS GLN MODRES 3K6E MSE A 1 MET SELENOMETHIONINE MODRES 3K6E MSE A 43 MET SELENOMETHIONINE MODRES 3K6E MSE A 67 MET SELENOMETHIONINE MODRES 3K6E MSE A 71 MET SELENOMETHIONINE MODRES 3K6E MSE A 80 MET SELENOMETHIONINE MODRES 3K6E MSE A 88 MET SELENOMETHIONINE MODRES 3K6E MSE B 1 MET SELENOMETHIONINE MODRES 3K6E MSE B 43 MET SELENOMETHIONINE MODRES 3K6E MSE B 67 MET SELENOMETHIONINE MODRES 3K6E MSE B 71 MET SELENOMETHIONINE MODRES 3K6E MSE B 80 MET SELENOMETHIONINE MODRES 3K6E MSE B 88 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 43 8 HET MSE A 67 8 HET MSE A 71 8 HET MSE A 80 8 HET MSE A 88 8 HET MSE B 1 8 HET MSE B 43 8 HET MSE B 67 8 HET MSE B 71 8 HET MSE B 80 8 HET MSE B 88 8 HET PO4 A 154 5 HETNAM MSE SELENOMETHIONINE HETNAM PO4 PHOSPHATE ION FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 3 PO4 O4 P 3- FORMUL 4 HOH *13(H2 O) HELIX 1 1 ASN A -1 GLY A 12 1 14 HELIX 2 2 GLN A 13 THR A 16 5 4 HELIX 3 3 ASN A 32 SER A 41 1 10 HELIX 4 4 LEU A 63 ASP A 74 1 12 HELIX 5 5 SER A 76 ALA A 81 1 6 HELIX 6 6 ASP A 82 THR A 83 5 2 HELIX 7 7 ASP A 84 MSE A 88 5 5 HELIX 8 8 THR A 101 LEU A 109 1 9 HELIX 9 9 ARG A 130 LEU A 141 1 12 HELIX 10 10 ALA B 0 GLY B 12 1 13 HELIX 11 11 GLN B 13 PHE B 17 1 5 HELIX 12 12 LYS B 22 LEU B 24 5 3 HELIX 13 13 ASN B 32 MSE B 43 1 12 HELIX 14 14 GLY B 62 ASP B 74 1 13 HELIX 15 15 SER B 76 ASP B 82 1 7 HELIX 16 16 THR B 83 THR B 89 5 7 HELIX 17 17 THR B 101 LEU B 109 1 9 HELIX 18 18 ARG B 130 ALA B 139 1 10 HELIX 19 19 LYS B 146 ILE B 150 5 5 SHEET 1 A 3 LEU A 18 PRO A 20 0 SHEET 2 A 3 PHE A 124 THR A 129 -1 O ILE A 127 N THR A 19 SHEET 3 A 3 PHE A 114 VAL A 118 -1 N VAL A 117 O GLY A 126 SHEET 1 B 3 LEU A 27 ILE A 28 0 SHEET 2 B 3 ARG A 47 VAL A 51 1 O VAL A 51 N LEU A 27 SHEET 3 B 3 PHE A 57 GLY A 62 -1 O GLY A 59 N VAL A 50 SHEET 1 C 3 LEU B 18 PRO B 20 0 SHEET 2 C 3 PHE B 124 THR B 129 -1 O ILE B 127 N THR B 19 SHEET 3 C 3 PHE B 114 VAL B 118 -1 N VAL B 117 O GLY B 126 SHEET 1 D 3 LEU B 27 ILE B 28 0 SHEET 2 D 3 VAL B 48 VAL B 51 1 O VAL B 51 N LEU B 27 SHEET 3 D 3 PHE B 57 ILE B 61 -1 O GLY B 59 N VAL B 50 LINK C ALA A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N ILE A 2 1555 1555 1.33 LINK C GLN A 42 N MSE A 43 1555 1555 1.33 LINK C MSE A 43 N THR A 44 1555 1555 1.32 LINK C ILE A 66 N MSE A 67 1555 1555 1.32 LINK C MSE A 67 N ALA A 68 1555 1555 1.33 LINK C GLN A 70 N MSE A 71 1555 1555 1.32 LINK C MSE A 71 N GLU A 72 1555 1555 1.33 LINK C ILE A 79 N MSE A 80 1555 1555 1.33 LINK C MSE A 80 N ALA A 81 1555 1555 1.33 LINK C HIS A 87 N MSE A 88 1555 1555 1.32 LINK C MSE A 88 N THR A 89 1555 1555 1.32 LINK C ALA B 0 N MSE B 1 1555 1555 1.34 LINK C MSE B 1 N ILE B 2 1555 1555 1.33 LINK C GLN B 42 N MSE B 43 1555 1555 1.32 LINK C MSE B 43 N THR B 44 1555 1555 1.32 LINK C ILE B 66 N MSE B 67 1555 1555 1.33 LINK C MSE B 67 N ALA B 68 1555 1555 1.33 LINK C GLN B 70 N MSE B 71 1555 1555 1.32 LINK C MSE B 71 N GLU B 72 1555 1555 1.33 LINK C ILE B 79 N MSE B 80 1555 1555 1.33 LINK C MSE B 80 N ALA B 81 1555 1555 1.33 LINK C HIS B 87 N MSE B 88 1555 1555 1.33 LINK C MSE B 88 N THR B 89 1555 1555 1.32 SITE 1 AC1 4 TYR A 45 LYS A 131 ASP B 111 ARG B 130 CRYST1 55.219 85.175 91.602 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018110 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011741 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010917 0.00000