HEADER OXIDOREDUCTASE 08-OCT-09 3K6H TITLE CRYSTAL STRUCTURE OF A NITROREDUCTASE FAMILY PROTEIN FROM TITLE 2 AGROBACTERIUM TUMEFACIENS STR. C58 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NITROREDUCTASE FAMILY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM TUMEFACIENS STR.; SOURCE 3 ORGANISM_TAXID: 176299; SOURCE 4 STRAIN: C58; SOURCE 5 GENE: AGR_C_3200, ATU1744; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: P15TV LIC KEYWDS APC5990, NITROREDUCTASE FAMILY, AGROBACTERIUM TUMEFACIENS STR. C58, KEYWDS 2 STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST KEYWDS 3 CENTER FOR STRUCTURAL GENOMICS, MCSG, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,X.XU,H.CUI,A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK,MIDWEST CENTER AUTHOR 2 FOR STRUCTURAL GENOMICS (MCSG) REVDAT 3 20-NOV-24 3K6H 1 REMARK SEQADV LINK REVDAT 2 13-JUL-11 3K6H 1 VERSN REVDAT 1 27-OCT-09 3K6H 0 JRNL AUTH K.TAN,X.XU,H.CUI,A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF A NITROREDUCTASE FAMILY PROTEIN FROM JRNL TITL 2 AGROBACTERIUM TUMEFACIENS STR. C58 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.5_2) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.900 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 22613 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.840 REMARK 3 FREE R VALUE TEST SET COUNT : 1094 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.7059 - 6.0973 1.00 2705 136 0.1947 0.2256 REMARK 3 2 6.0973 - 4.8410 1.00 2701 135 0.1565 0.2264 REMARK 3 3 4.8410 - 4.2294 1.00 2682 147 0.1234 0.2049 REMARK 3 4 4.2294 - 3.8429 1.00 2695 123 0.1473 0.2035 REMARK 3 5 3.8429 - 3.5676 1.00 2705 124 0.1711 0.2206 REMARK 3 6 3.5676 - 3.3573 0.99 2654 148 0.1966 0.2336 REMARK 3 7 3.3573 - 3.1892 1.00 2665 157 0.2360 0.3393 REMARK 3 8 3.1892 - 3.0504 0.98 2712 124 0.3250 0.4574 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.31 REMARK 3 B_SOL : 48.11 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.500 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 75.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 11.87920 REMARK 3 B22 (A**2) : 11.87920 REMARK 3 B33 (A**2) : -23.75850 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3174 REMARK 3 ANGLE : 1.258 4342 REMARK 3 CHIRALITY : 0.079 474 REMARK 3 PLANARITY : 0.011 550 REMARK 3 DIHEDRAL : 20.139 1158 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN B RESID 174:195 REMARK 3 ORIGIN FOR THE GROUP (A): 36.2125 36.2587 68.0701 REMARK 3 T TENSOR REMARK 3 T11: 0.5851 T22: 0.3397 REMARK 3 T33: 0.5045 T12: -0.0457 REMARK 3 T13: -0.1004 T23: -0.0792 REMARK 3 L TENSOR REMARK 3 L11: 2.4841 L22: 1.1900 REMARK 3 L33: 3.3212 L12: -0.4210 REMARK 3 L13: 0.5006 L23: 0.0384 REMARK 3 S TENSOR REMARK 3 S11: 0.2608 S12: 0.0428 S13: -0.3763 REMARK 3 S21: 0.1167 S22: -0.0081 S23: 0.2004 REMARK 3 S31: 0.9043 S32: 0.0757 S33: -0.2331 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3K6H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000055606. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97940, 0.97951 REMARK 200 MONOCHROMATOR : SI 111 CRYSTAL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12188 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.050 REMARK 200 RESOLUTION RANGE LOW (A) : 49.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.200 REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.40 REMARK 200 R MERGE FOR SHELL (I) : 0.81400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.860 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELXD, MLPHARE, HKL-3000, DM, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS, 1.5M AMMONIUM SULPHATE, REMARK 280 1/80 TRPSIN, PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 63.73500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 63.73500 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 75.49150 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 63.73500 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 63.73500 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 75.49150 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 63.73500 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 63.73500 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 75.49150 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 63.73500 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 63.73500 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 75.49150 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 63.73500 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 63.73500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 75.49150 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 63.73500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 63.73500 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 75.49150 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 63.73500 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 63.73500 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 75.49150 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 63.73500 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 63.73500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 75.49150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -165.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A -1 REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 ILE A 2 REMARK 465 MSE A 3 REMARK 465 VAL A 195 REMARK 465 GLN B -1 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 ILE B 2 REMARK 465 MSE B 3 REMARK 465 THR B 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 15 -18.05 -145.59 REMARK 500 PRO A 52 40.71 -79.74 REMARK 500 PRO A 79 -76.21 -25.41 REMARK 500 ASP A 82 125.96 -5.72 REMARK 500 LYS A 111 -25.34 -143.38 REMARK 500 SER A 159 -160.91 -77.26 REMARK 500 ARG B 16 115.97 -38.76 REMARK 500 ASP B 46 78.47 -177.84 REMARK 500 LYS B 49 53.75 31.37 REMARK 500 ALA B 51 69.66 34.85 REMARK 500 PRO B 52 43.67 -79.10 REMARK 500 LYS B 111 -33.90 -137.74 REMARK 500 GLU B 144 -147.18 -108.05 REMARK 500 SER B 159 -172.44 -55.19 REMARK 500 GLU B 161 1.37 -67.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 196 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 196 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 197 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 197 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 198 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 198 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 199 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN B 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 199 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC5990 RELATED DB: TARGETDB DBREF 3K6H A 3 195 UNP A9CIP6 A9CIP6_AGRT5 1 193 DBREF 3K6H B 3 195 UNP A9CIP6 A9CIP6_AGRT5 1 193 SEQADV 3K6H GLN A -1 UNP A9CIP6 EXPRESSION TAG SEQADV 3K6H GLY A 0 UNP A9CIP6 EXPRESSION TAG SEQADV 3K6H MSE A 1 UNP A9CIP6 EXPRESSION TAG SEQADV 3K6H ILE A 2 UNP A9CIP6 EXPRESSION TAG SEQADV 3K6H GLN B -1 UNP A9CIP6 EXPRESSION TAG SEQADV 3K6H GLY B 0 UNP A9CIP6 EXPRESSION TAG SEQADV 3K6H MSE B 1 UNP A9CIP6 EXPRESSION TAG SEQADV 3K6H ILE B 2 UNP A9CIP6 EXPRESSION TAG SEQRES 1 A 197 GLN GLY MSE ILE MSE THR SER ASP ILE LYS LEU LEU ASP SEQRES 2 A 197 TYR LEU ARG VAL ARG ARG SER THR PRO ALA LEU GLN LEU SEQRES 3 A 197 SER GLU PRO GLY PRO SER LYS GLY GLU ILE GLU GLU ILE SEQRES 4 A 197 LEU ARG LEU ALA VAL ARG VAL PRO ASP HIS GLY LYS LEU SEQRES 5 A 197 ALA PRO TRP ARG PHE VAL VAL TYR ARG GLY GLU GLU ARG SEQRES 6 A 197 VAL ARG LEU SER GLU ALA ALA LEU ARG ILE ALA LEU GLU SEQRES 7 A 197 LYS ASN PRO ASP LEU ASP LEU GLN GLN GLN GLU ALA GLU SEQRES 8 A 197 ARG THR ARG PHE THR ARG ALA PRO VAL VAL ILE ALA VAL SEQRES 9 A 197 ILE SER THR ALA LYS PRO HIS PHE LYS ILE PRO GLU TRP SEQRES 10 A 197 GLU GLN VAL MSE SER ALA GLY ALA VAL CYS LEU ASN VAL SEQRES 11 A 197 ILE PHE ALA ALA ASN ALA SER GLY PHE ALA ALA ASN TRP SEQRES 12 A 197 LEU THR GLU TRP LEU ALA PHE ASP PRO ALA PHE LEU ALA SEQRES 13 A 197 GLU ILE GLY VAL SER ALA GLU GLU LYS VAL ALA GLY TYR SEQRES 14 A 197 ILE HIS ILE GLY SER THR THR PHE PRO PRO VAL GLU ARG SEQRES 15 A 197 PRO ARG PRO GLU LEU ALA ASP VAL VAL THR TRP VAL GLY SEQRES 16 A 197 ASP VAL SEQRES 1 B 197 GLN GLY MSE ILE MSE THR SER ASP ILE LYS LEU LEU ASP SEQRES 2 B 197 TYR LEU ARG VAL ARG ARG SER THR PRO ALA LEU GLN LEU SEQRES 3 B 197 SER GLU PRO GLY PRO SER LYS GLY GLU ILE GLU GLU ILE SEQRES 4 B 197 LEU ARG LEU ALA VAL ARG VAL PRO ASP HIS GLY LYS LEU SEQRES 5 B 197 ALA PRO TRP ARG PHE VAL VAL TYR ARG GLY GLU GLU ARG SEQRES 6 B 197 VAL ARG LEU SER GLU ALA ALA LEU ARG ILE ALA LEU GLU SEQRES 7 B 197 LYS ASN PRO ASP LEU ASP LEU GLN GLN GLN GLU ALA GLU SEQRES 8 B 197 ARG THR ARG PHE THR ARG ALA PRO VAL VAL ILE ALA VAL SEQRES 9 B 197 ILE SER THR ALA LYS PRO HIS PHE LYS ILE PRO GLU TRP SEQRES 10 B 197 GLU GLN VAL MSE SER ALA GLY ALA VAL CYS LEU ASN VAL SEQRES 11 B 197 ILE PHE ALA ALA ASN ALA SER GLY PHE ALA ALA ASN TRP SEQRES 12 B 197 LEU THR GLU TRP LEU ALA PHE ASP PRO ALA PHE LEU ALA SEQRES 13 B 197 GLU ILE GLY VAL SER ALA GLU GLU LYS VAL ALA GLY TYR SEQRES 14 B 197 ILE HIS ILE GLY SER THR THR PHE PRO PRO VAL GLU ARG SEQRES 15 B 197 PRO ARG PRO GLU LEU ALA ASP VAL VAL THR TRP VAL GLY SEQRES 16 B 197 ASP VAL MODRES 3K6H MSE A 119 MET SELENOMETHIONINE MODRES 3K6H MSE B 119 MET SELENOMETHIONINE HET MSE A 119 8 HET MSE B 119 8 HET SO4 A 196 5 HET SO4 A 197 5 HET SO4 A 198 5 HET FMN A 199 31 HET SO4 B 196 5 HET SO4 B 197 5 HET SO4 B 198 5 HET SO4 B 199 5 HET FMN B 200 31 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM FMN FLAVIN MONONUCLEOTIDE HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 3 SO4 7(O4 S 2-) FORMUL 6 FMN 2(C17 H21 N4 O9 P) HELIX 1 1 LYS A 8 ARG A 14 1 7 HELIX 2 2 SER A 30 VAL A 42 1 13 HELIX 3 3 GLY A 60 ASN A 78 1 19 HELIX 4 4 ASP A 82 THR A 91 1 10 HELIX 5 5 PRO A 113 SER A 135 1 23 HELIX 6 6 GLU A 144 PHE A 148 5 5 HELIX 7 7 ASP A 149 GLY A 157 1 9 HELIX 8 8 GLU A 184 VAL A 188 1 5 HELIX 9 9 LYS B 8 ARG B 16 1 9 HELIX 10 10 PRO B 20 LEU B 24 5 5 HELIX 11 11 SER B 30 VAL B 42 1 13 HELIX 12 12 ASP B 46 LEU B 50 5 5 HELIX 13 13 ARG B 59 ASN B 78 1 20 HELIX 14 14 ASP B 82 ARG B 90 1 9 HELIX 15 15 PRO B 113 ALA B 134 1 22 HELIX 16 16 GLU B 144 PHE B 148 5 5 HELIX 17 17 ASP B 149 GLY B 157 1 9 HELIX 18 18 GLU B 184 VAL B 188 1 5 SHEET 1 A 5 ALA A 138 LEU A 142 0 SHEET 2 A 5 LYS A 163 GLY A 171 -1 O TYR A 167 N LEU A 142 SHEET 3 A 5 VAL A 98 SER A 104 -1 N SER A 104 O LYS A 163 SHEET 4 A 5 TRP A 53 ARG A 59 -1 N VAL A 56 O ALA A 101 SHEET 5 A 5 VAL B 189 VAL B 192 1 O VAL B 192 N VAL A 57 SHEET 1 B 5 VAL A 189 VAL A 192 0 SHEET 2 B 5 TRP B 53 TYR B 58 1 O VAL B 57 N THR A 190 SHEET 3 B 5 VAL B 98 SER B 104 -1 O ALA B 101 N VAL B 56 SHEET 4 B 5 LYS B 163 GLY B 171 -1 O LYS B 163 N SER B 104 SHEET 5 B 5 ALA B 138 LEU B 142 -1 N LEU B 142 O TYR B 167 LINK C VAL A 118 N MSE A 119 1555 1555 1.33 LINK C MSE A 119 N SER A 120 1555 1555 1.33 LINK C VAL B 118 N MSE B 119 1555 1555 1.33 LINK C MSE B 119 N SER B 120 1555 1555 1.33 CISPEP 1 GLU A 26 PRO A 27 0 10.05 CISPEP 2 GLU B 26 PRO B 27 0 3.88 SITE 1 AC1 2 ARG B 17 FMN B 200 SITE 1 AC2 3 SER A 30 LYS A 31 ARG A 59 SITE 1 AC3 1 ARG B 92 SITE 1 AC4 4 ARG A 17 PRO A 20 FMN A 199 SO4 B 199 SITE 1 AC5 2 ARG A 92 GLU A 144 SITE 1 AC6 3 SER B 30 LYS B 31 ARG B 59 SITE 1 AC7 5 SO4 A 197 FMN A 199 HIS B 47 GLY B 48 SITE 2 AC7 5 LYS B 49 SITE 1 AC8 15 VAL A 44 PRO A 45 ASP A 46 HIS A 47 SITE 2 AC8 15 MSE A 119 ARG B 16 ARG B 17 SER B 18 SITE 3 AC8 15 ASN B 140 TRP B 141 THR B 143 GLU B 144 SITE 4 AC8 15 ARG B 180 ARG B 182 SO4 B 196 SITE 1 AC9 17 ARG A 16 ARG A 17 SER A 18 ASN A 140 SITE 2 AC9 17 TRP A 141 LEU A 142 THR A 143 GLU A 144 SITE 3 AC9 17 ARG A 180 ARG A 182 SO4 A 197 VAL B 44 SITE 4 AC9 17 PRO B 45 ASP B 46 HIS B 47 MSE B 119 SITE 5 AC9 17 SO4 B 199 CRYST1 127.470 127.470 150.983 90.00 90.00 90.00 I 4 2 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007845 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007845 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006623 0.00000 CONECT 929 934 CONECT 934 929 935 CONECT 935 934 936 938 CONECT 936 935 937 942 CONECT 937 936 CONECT 938 935 939 CONECT 939 938 940 CONECT 940 939 941 CONECT 941 940 CONECT 942 936 CONECT 2426 2431 CONECT 2431 2426 2432 CONECT 2432 2431 2433 2435 CONECT 2433 2432 2434 2439 CONECT 2434 2433 CONECT 2435 2432 2436 CONECT 2436 2435 2437 CONECT 2437 2436 2438 CONECT 2438 2437 CONECT 2439 2433 CONECT 3009 3010 3011 3012 3013 CONECT 3010 3009 CONECT 3011 3009 CONECT 3012 3009 CONECT 3013 3009 CONECT 3014 3015 3016 3017 3018 CONECT 3015 3014 CONECT 3016 3014 CONECT 3017 3014 CONECT 3018 3014 CONECT 3019 3020 3021 3022 3023 CONECT 3020 3019 CONECT 3021 3019 CONECT 3022 3019 CONECT 3023 3019 CONECT 3024 3025 3041 CONECT 3025 3024 3026 3027 CONECT 3026 3025 CONECT 3027 3025 3028 CONECT 3028 3027 3029 3030 CONECT 3029 3028 CONECT 3030 3028 3031 3041 CONECT 3031 3030 3032 CONECT 3032 3031 3033 3039 CONECT 3033 3032 3034 CONECT 3034 3033 3035 3036 CONECT 3035 3034 CONECT 3036 3034 3037 3038 CONECT 3037 3036 CONECT 3038 3036 3039 CONECT 3039 3032 3038 3040 CONECT 3040 3039 3041 3042 CONECT 3041 3024 3030 3040 CONECT 3042 3040 3043 CONECT 3043 3042 3044 3045 CONECT 3044 3043 CONECT 3045 3043 3046 3047 CONECT 3046 3045 CONECT 3047 3045 3048 3049 CONECT 3048 3047 CONECT 3049 3047 3050 CONECT 3050 3049 3051 CONECT 3051 3050 3052 3053 3054 CONECT 3052 3051 CONECT 3053 3051 CONECT 3054 3051 CONECT 3055 3056 3057 3058 3059 CONECT 3056 3055 CONECT 3057 3055 CONECT 3058 3055 CONECT 3059 3055 CONECT 3060 3061 3062 3063 3064 CONECT 3061 3060 CONECT 3062 3060 CONECT 3063 3060 CONECT 3064 3060 CONECT 3065 3066 3067 3068 3069 CONECT 3066 3065 CONECT 3067 3065 CONECT 3068 3065 CONECT 3069 3065 CONECT 3070 3071 3072 3073 3074 CONECT 3071 3070 CONECT 3072 3070 CONECT 3073 3070 CONECT 3074 3070 CONECT 3075 3076 3092 CONECT 3076 3075 3077 3078 CONECT 3077 3076 CONECT 3078 3076 3079 CONECT 3079 3078 3080 3081 CONECT 3080 3079 CONECT 3081 3079 3082 3092 CONECT 3082 3081 3083 CONECT 3083 3082 3084 3090 CONECT 3084 3083 3085 CONECT 3085 3084 3086 3087 CONECT 3086 3085 CONECT 3087 3085 3088 3089 CONECT 3088 3087 CONECT 3089 3087 3090 CONECT 3090 3083 3089 3091 CONECT 3091 3090 3092 3093 CONECT 3092 3075 3081 3091 CONECT 3093 3091 3094 CONECT 3094 3093 3095 3096 CONECT 3095 3094 CONECT 3096 3094 3097 3098 CONECT 3097 3096 CONECT 3098 3096 3099 3100 CONECT 3099 3098 CONECT 3100 3098 3101 CONECT 3101 3100 3102 CONECT 3102 3101 3103 3104 3105 CONECT 3103 3102 CONECT 3104 3102 CONECT 3105 3102 MASTER 354 0 11 18 10 0 17 6 3103 2 117 32 END