HEADER LIGAND BINDING PROTEIN 09-OCT-09 3K6Q TITLE CRYSTAL STRUCTURE OF AN ANTITOXIN PART OF A PUTATIVE TOXIN/ANTITOXIN TITLE 2 SYSTEM (SWOL_0700) FROM SYNTROPHOMONAS WOLFEI SUBSP. WOLFEI AT 1.80 A TITLE 3 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE LIGAND BINDING PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTROPHOMONAS WOLFEI SUBSP. WOLFEI; SOURCE 3 ORGANISM_TAXID: 335541; SOURCE 4 STRAIN: GOETTINGEN; SOURCE 5 GENE: SWOL_0700; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, LIGAND BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 01-FEB-23 3K6Q 1 REMARK SEQADV LINK REVDAT 5 17-JUL-19 3K6Q 1 REMARK LINK REVDAT 4 01-NOV-17 3K6Q 1 REMARK REVDAT 3 13-JUL-11 3K6Q 1 VERSN REVDAT 2 28-JUL-10 3K6Q 1 TITLE KEYWDS REVDAT 1 27-OCT-09 3K6Q 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE LIGAND BINDING PROTEIN JRNL TITL 2 (YP_753395.1) FROM SYNTROPHOMONAS WOLFEI STR. GOETTINGEN AT JRNL TITL 3 1.80 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 46885 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2379 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3278 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.2360 REMARK 3 BIN FREE R VALUE SET COUNT : 178 REMARK 3 BIN FREE R VALUE : 0.2790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4509 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 330 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 24.57 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.09000 REMARK 3 B22 (A**2) : -0.45000 REMARK 3 B33 (A**2) : -0.29000 REMARK 3 B12 (A**2) : -1.45000 REMARK 3 B13 (A**2) : 0.35000 REMARK 3 B23 (A**2) : -0.82000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.160 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.154 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.108 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.637 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4741 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3168 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6436 ; 1.545 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7814 ; 0.937 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 589 ; 6.459 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 241 ;37.441 ;25.685 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 896 ;15.085 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;19.699 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 733 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5263 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 915 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2836 ; 0.925 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1137 ; 0.255 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4634 ; 1.627 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1905 ; 2.452 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1785 ; 3.901 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 138 REMARK 3 ORIGIN FOR THE GROUP (A): 8.7290 0.7120 35.4570 REMARK 3 T TENSOR REMARK 3 T11: 0.0615 T22: 0.0712 REMARK 3 T33: 0.0724 T12: 0.0035 REMARK 3 T13: -0.0361 T23: -0.0096 REMARK 3 L TENSOR REMARK 3 L11: 2.9209 L22: 1.2757 REMARK 3 L33: 2.1582 L12: -1.3636 REMARK 3 L13: -1.7130 L23: 0.6888 REMARK 3 S TENSOR REMARK 3 S11: -0.0152 S12: -0.2695 S13: 0.0944 REMARK 3 S21: 0.0187 S22: 0.1078 S23: -0.0501 REMARK 3 S31: -0.1418 S32: 0.1995 S33: -0.0926 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 138 REMARK 3 ORIGIN FOR THE GROUP (A): 8.2750 -15.7300 29.9190 REMARK 3 T TENSOR REMARK 3 T11: 0.0994 T22: 0.0722 REMARK 3 T33: 0.0792 T12: 0.0798 REMARK 3 T13: -0.0005 T23: 0.0175 REMARK 3 L TENSOR REMARK 3 L11: 2.5807 L22: 1.9179 REMARK 3 L33: 1.1440 L12: 1.7233 REMARK 3 L13: -0.0628 L23: -0.0947 REMARK 3 S TENSOR REMARK 3 S11: 0.0203 S12: -0.0496 S13: -0.0569 REMARK 3 S21: -0.0129 S22: -0.0413 S23: 0.0130 REMARK 3 S31: 0.0800 S32: 0.0200 S33: 0.0210 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 138 REMARK 3 ORIGIN FOR THE GROUP (A): 35.0910 12.5090 8.5360 REMARK 3 T TENSOR REMARK 3 T11: 0.1058 T22: 0.0510 REMARK 3 T33: 0.0829 T12: 0.0167 REMARK 3 T13: -0.0509 T23: 0.0391 REMARK 3 L TENSOR REMARK 3 L11: 2.3523 L22: 0.7443 REMARK 3 L33: 1.4376 L12: -0.2633 REMARK 3 L13: -0.9440 L23: 0.3337 REMARK 3 S TENSOR REMARK 3 S11: -0.0313 S12: 0.1687 S13: 0.0779 REMARK 3 S21: -0.0687 S22: -0.0188 S23: 0.0520 REMARK 3 S31: -0.0908 S32: -0.0321 S33: 0.0501 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 138 REMARK 3 ORIGIN FOR THE GROUP (A): 36.2200 -3.8950 1.2420 REMARK 3 T TENSOR REMARK 3 T11: 0.0698 T22: 0.0718 REMARK 3 T33: 0.0397 T12: 0.0513 REMARK 3 T13: -0.0168 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 2.7603 L22: 2.4386 REMARK 3 L33: 0.9254 L12: 1.6180 REMARK 3 L13: 0.7414 L23: 0.2919 REMARK 3 S TENSOR REMARK 3 S11: -0.0724 S12: 0.0974 S13: -0.0656 REMARK 3 S21: -0.0888 S22: 0.0432 S23: 0.0200 REMARK 3 S31: 0.0838 S32: 0.0544 S33: 0.0291 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS REMARK 3 ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE REMARK 3 ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED REMARK 3 SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. REMARK 3 MAGNESIUM ION (MG), CHLORIDE ION (CL), AND ETHYLENE GLYCOL (EDO) REMARK 3 FROM THE CRYSTALLIZATION/CRYOPROTECTION SOLUTION ARE MODELED. REMARK 4 REMARK 4 3K6Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000055615. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97905,0.97860 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.5 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46885 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 29.828 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : 0.04800 REMARK 200 FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.34400 REMARK 200 R SYM FOR SHELL (I) : 0.34400 REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2000M MGCL2, 20.0000% PEG-3350, NO REMARK 280 BUFFER PH 5.8, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A REMARK 300 DIMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 0 REMARK 465 GLY C 0 REMARK 465 GLY D 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 32 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 68 CG OD1 OD2 REMARK 470 LYS A 102 CG CD CE NZ REMARK 470 GLU A 136 CG CD OE1 OE2 REMARK 470 ARG C 22 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 23 -105.07 -132.69 REMARK 500 ASP A 23 -78.15 -113.67 REMARK 500 ASN A 31 -120.98 53.61 REMARK 500 ASP A 68 98.87 -68.39 REMARK 500 ASN A 99 -18.19 -49.94 REMARK 500 ASP B 23 -66.23 -125.97 REMARK 500 ASN B 31 -115.35 62.30 REMARK 500 ASP B 60 51.16 73.84 REMARK 500 ASP C 23 -129.99 -145.37 REMARK 500 ASN C 31 -108.52 49.05 REMARK 500 ASN C 31 -106.21 45.91 REMARK 500 ASP C 60 73.95 33.76 REMARK 500 ASP D 23 -65.66 -123.13 REMARK 500 ASN D 31 -105.98 42.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 MSE D 1 GLN D 2 144.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 139 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 140 O REMARK 620 2 HOH B 141 O 96.5 REMARK 620 3 HOH B 142 O 77.5 173.9 REMARK 620 4 HOH B 145 O 92.2 101.0 78.3 REMARK 620 5 HOH B 146 O 166.3 94.7 91.4 93.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 139 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 139 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 140 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO D 139 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 391895 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3K6Q A 1 138 UNP Q0AZ30 Q0AZ30_SYNWW 1 138 DBREF 3K6Q B 1 138 UNP Q0AZ30 Q0AZ30_SYNWW 1 138 DBREF 3K6Q C 1 138 UNP Q0AZ30 Q0AZ30_SYNWW 1 138 DBREF 3K6Q D 1 138 UNP Q0AZ30 Q0AZ30_SYNWW 1 138 SEQADV 3K6Q GLY A 0 UNP Q0AZ30 EXPRESSION TAG SEQADV 3K6Q GLY B 0 UNP Q0AZ30 EXPRESSION TAG SEQADV 3K6Q GLY C 0 UNP Q0AZ30 EXPRESSION TAG SEQADV 3K6Q GLY D 0 UNP Q0AZ30 EXPRESSION TAG SEQRES 1 A 139 GLY MSE GLN THR ILE ASN ALA THR GLU ILE ARG ASN ASN SEQRES 2 A 139 PHE SER TYR TYR ILE ASP THR VAL VAL ARG ASP LYS PRO SEQRES 3 A 139 ILE ALA VAL LYS ARG ASN ARG ASP VAL LEU LEU PHE PHE SEQRES 4 A 139 SER GLU GLN ILE ILE LYS ASP LEU LEU GLN ASP LEU LYS SEQRES 5 A 139 ILE HIS ALA GLU LEU SER LYS GLU ASP GLY ILE ILE ILE SEQRES 6 A 139 GLY THR ILE ASP GLY PHE ASP LEU VAL VAL SER GLY GLU SEQRES 7 A 139 SER GLU GLN GLU VAL ILE GLN LYS LEU ALA GLU ASP LEU SEQRES 8 A 139 LEU GLU TYR ALA GLN ASP TYR MSE ASN ASP PHE LYS LEU SEQRES 9 A 139 PHE TYR ASN ALA PRO ASN ARG LYS THR HIS TYR PRO TYR SEQRES 10 A 139 ILE LEU LYS VAL LEU LEU SER SER ASN ILE ASP GLU VAL SEQRES 11 A 139 LYS GLY TYR ILE TYR ALA GLU MSE VAL SEQRES 1 B 139 GLY MSE GLN THR ILE ASN ALA THR GLU ILE ARG ASN ASN SEQRES 2 B 139 PHE SER TYR TYR ILE ASP THR VAL VAL ARG ASP LYS PRO SEQRES 3 B 139 ILE ALA VAL LYS ARG ASN ARG ASP VAL LEU LEU PHE PHE SEQRES 4 B 139 SER GLU GLN ILE ILE LYS ASP LEU LEU GLN ASP LEU LYS SEQRES 5 B 139 ILE HIS ALA GLU LEU SER LYS GLU ASP GLY ILE ILE ILE SEQRES 6 B 139 GLY THR ILE ASP GLY PHE ASP LEU VAL VAL SER GLY GLU SEQRES 7 B 139 SER GLU GLN GLU VAL ILE GLN LYS LEU ALA GLU ASP LEU SEQRES 8 B 139 LEU GLU TYR ALA GLN ASP TYR MSE ASN ASP PHE LYS LEU SEQRES 9 B 139 PHE TYR ASN ALA PRO ASN ARG LYS THR HIS TYR PRO TYR SEQRES 10 B 139 ILE LEU LYS VAL LEU LEU SER SER ASN ILE ASP GLU VAL SEQRES 11 B 139 LYS GLY TYR ILE TYR ALA GLU MSE VAL SEQRES 1 C 139 GLY MSE GLN THR ILE ASN ALA THR GLU ILE ARG ASN ASN SEQRES 2 C 139 PHE SER TYR TYR ILE ASP THR VAL VAL ARG ASP LYS PRO SEQRES 3 C 139 ILE ALA VAL LYS ARG ASN ARG ASP VAL LEU LEU PHE PHE SEQRES 4 C 139 SER GLU GLN ILE ILE LYS ASP LEU LEU GLN ASP LEU LYS SEQRES 5 C 139 ILE HIS ALA GLU LEU SER LYS GLU ASP GLY ILE ILE ILE SEQRES 6 C 139 GLY THR ILE ASP GLY PHE ASP LEU VAL VAL SER GLY GLU SEQRES 7 C 139 SER GLU GLN GLU VAL ILE GLN LYS LEU ALA GLU ASP LEU SEQRES 8 C 139 LEU GLU TYR ALA GLN ASP TYR MSE ASN ASP PHE LYS LEU SEQRES 9 C 139 PHE TYR ASN ALA PRO ASN ARG LYS THR HIS TYR PRO TYR SEQRES 10 C 139 ILE LEU LYS VAL LEU LEU SER SER ASN ILE ASP GLU VAL SEQRES 11 C 139 LYS GLY TYR ILE TYR ALA GLU MSE VAL SEQRES 1 D 139 GLY MSE GLN THR ILE ASN ALA THR GLU ILE ARG ASN ASN SEQRES 2 D 139 PHE SER TYR TYR ILE ASP THR VAL VAL ARG ASP LYS PRO SEQRES 3 D 139 ILE ALA VAL LYS ARG ASN ARG ASP VAL LEU LEU PHE PHE SEQRES 4 D 139 SER GLU GLN ILE ILE LYS ASP LEU LEU GLN ASP LEU LYS SEQRES 5 D 139 ILE HIS ALA GLU LEU SER LYS GLU ASP GLY ILE ILE ILE SEQRES 6 D 139 GLY THR ILE ASP GLY PHE ASP LEU VAL VAL SER GLY GLU SEQRES 7 D 139 SER GLU GLN GLU VAL ILE GLN LYS LEU ALA GLU ASP LEU SEQRES 8 D 139 LEU GLU TYR ALA GLN ASP TYR MSE ASN ASP PHE LYS LEU SEQRES 9 D 139 PHE TYR ASN ALA PRO ASN ARG LYS THR HIS TYR PRO TYR SEQRES 10 D 139 ILE LEU LYS VAL LEU LEU SER SER ASN ILE ASP GLU VAL SEQRES 11 D 139 LYS GLY TYR ILE TYR ALA GLU MSE VAL MODRES 3K6Q MSE A 1 MET SELENOMETHIONINE MODRES 3K6Q MSE A 98 MET SELENOMETHIONINE MODRES 3K6Q MSE A 137 MET SELENOMETHIONINE MODRES 3K6Q MSE B 1 MET SELENOMETHIONINE MODRES 3K6Q MSE B 98 MET SELENOMETHIONINE MODRES 3K6Q MSE B 137 MET SELENOMETHIONINE MODRES 3K6Q MSE C 1 MET SELENOMETHIONINE MODRES 3K6Q MSE C 98 MET SELENOMETHIONINE MODRES 3K6Q MSE C 137 MET SELENOMETHIONINE MODRES 3K6Q MSE D 1 MET SELENOMETHIONINE MODRES 3K6Q MSE D 98 MET SELENOMETHIONINE MODRES 3K6Q MSE D 137 MET SELENOMETHIONINE HET MSE A 1 16 HET MSE A 98 8 HET MSE A 137 8 HET MSE B 1 8 HET MSE B 98 8 HET MSE B 137 13 HET MSE C 1 8 HET MSE C 98 8 HET MSE C 137 16 HET MSE D 1 16 HET MSE D 98 8 HET MSE D 137 16 HET MG B 139 1 HET CL C 139 1 HET EDO C 140 4 HET EDO D 139 4 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 5 MG MG 2+ FORMUL 6 CL CL 1- FORMUL 7 EDO 2(C2 H6 O2) FORMUL 9 HOH *330(H2 O) HELIX 1 1 ALA A 6 ASN A 12 1 7 HELIX 2 2 ASN A 12 ASP A 23 1 12 HELIX 3 3 GLU A 40 LEU A 47 1 8 HELIX 4 4 SER A 78 ASP A 100 1 23 HELIX 5 5 ASP A 100 ALA A 107 1 8 HELIX 6 6 ARG A 110 THR A 112 5 3 HELIX 7 7 HIS A 113 SER A 123 1 11 HELIX 8 8 ASN A 125 GLY A 131 1 7 HELIX 9 9 ALA B 6 ASN B 12 1 7 HELIX 10 10 ASN B 12 ASP B 23 1 12 HELIX 11 11 GLU B 40 LEU B 47 1 8 HELIX 12 12 ASP B 68 ASP B 71 5 4 HELIX 13 13 SER B 78 ASP B 100 1 23 HELIX 14 14 ASP B 100 ASN B 106 1 7 HELIX 15 15 HIS B 113 SER B 123 1 11 HELIX 16 16 ASN B 125 GLY B 131 1 7 HELIX 17 17 ALA C 6 ASN C 12 1 7 HELIX 18 18 ASN C 12 ASP C 23 1 12 HELIX 19 19 GLU C 40 LEU C 47 1 8 HELIX 20 20 ASP C 68 ASP C 71 5 4 HELIX 21 21 SER C 78 ASP C 100 1 23 HELIX 22 22 ASP C 100 ASN C 106 1 7 HELIX 23 23 ARG C 110 THR C 112 5 3 HELIX 24 24 HIS C 113 SER C 123 1 11 HELIX 25 25 ASN C 125 GLY C 131 1 7 HELIX 26 26 ALA D 6 ASN D 11 1 6 HELIX 27 27 ASN D 12 ASP D 23 1 12 HELIX 28 28 GLU D 40 LEU D 47 1 8 HELIX 29 29 SER D 78 ASP D 100 1 23 HELIX 30 30 ASP D 100 ASN D 106 1 7 HELIX 31 31 ARG D 110 THR D 112 5 3 HELIX 32 32 HIS D 113 SER D 123 1 11 HELIX 33 33 ASN D 125 GLY D 131 1 7 SHEET 1 A 6 THR A 3 ASN A 5 0 SHEET 2 A 6 ILE A 26 ARG A 30 1 O LYS A 29 N ILE A 4 SHEET 3 A 6 ASP A 33 SER A 39 -1 O ASP A 33 N ARG A 30 SHEET 4 A 6 ASP B 33 SER B 39 -1 O LEU B 36 N PHE A 38 SHEET 5 A 6 ILE B 26 ARG B 30 -1 N ARG B 30 O ASP B 33 SHEET 6 A 6 THR B 3 ASN B 5 1 N ILE B 4 O LYS B 29 SHEET 1 B 4 VAL A 73 GLY A 76 0 SHEET 2 B 4 ILE A 62 ILE A 67 -1 N ILE A 63 O GLY A 76 SHEET 3 B 4 ILE A 52 GLU A 59 -1 N SER A 57 O ILE A 64 SHEET 4 B 4 ILE A 133 MSE A 137 1 O TYR A 134 N ILE A 52 SHEET 1 C 4 LEU B 72 GLY B 76 0 SHEET 2 C 4 ILE B 62 ILE B 67 -1 N ILE B 63 O GLY B 76 SHEET 3 C 4 ILE B 52 GLU B 59 -1 N SER B 57 O ILE B 64 SHEET 4 C 4 ILE B 133 MSE B 137 1 O TYR B 134 N ILE B 52 SHEET 1 D 6 THR C 3 ASN C 5 0 SHEET 2 D 6 ILE C 26 ARG C 30 1 O ALA C 27 N ILE C 4 SHEET 3 D 6 ASP C 33 SER C 39 -1 O LEU C 35 N VAL C 28 SHEET 4 D 6 ASP D 33 SER D 39 -1 O PHE D 38 N LEU C 36 SHEET 5 D 6 ILE D 26 ARG D 30 -1 N VAL D 28 O LEU D 35 SHEET 6 D 6 ILE D 4 ASN D 5 1 N ILE D 4 O LYS D 29 SHEET 1 E 4 LEU C 72 GLY C 76 0 SHEET 2 E 4 ILE C 62 ILE C 67 -1 N ILE C 63 O GLY C 76 SHEET 3 E 4 ILE C 52 GLU C 59 -1 N GLU C 55 O THR C 66 SHEET 4 E 4 ILE C 133 VAL C 138 1 O TYR C 134 N ILE C 52 SHEET 1 F 4 LEU D 72 GLY D 76 0 SHEET 2 F 4 ILE D 62 ILE D 67 -1 N ILE D 63 O GLY D 76 SHEET 3 F 4 ILE D 52 GLU D 59 -1 N GLU D 55 O THR D 66 SHEET 4 F 4 ILE D 133 VAL D 138 1 O VAL D 138 N LEU D 56 LINK C GLY A 0 N AMSE A 1 1555 1555 1.34 LINK C GLY A 0 N BMSE A 1 1555 1555 1.33 LINK C AMSE A 1 N GLN A 2 1555 1555 1.34 LINK C BMSE A 1 N GLN A 2 1555 1555 1.32 LINK C TYR A 97 N MSE A 98 1555 1555 1.31 LINK C MSE A 98 N ASN A 99 1555 1555 1.34 LINK C GLU A 136 N MSE A 137 1555 1555 1.33 LINK C MSE A 137 N VAL A 138 1555 1555 1.34 LINK C MSE B 1 N GLN B 2 1555 1555 1.34 LINK C TYR B 97 N MSE B 98 1555 1555 1.34 LINK C MSE B 98 N ASN B 99 1555 1555 1.34 LINK C GLU B 136 N MSE B 137 1555 1555 1.34 LINK C MSE B 137 N VAL B 138 1555 1555 1.34 LINK C MSE C 1 N GLN C 2 1555 1555 1.33 LINK C TYR C 97 N MSE C 98 1555 1555 1.34 LINK C MSE C 98 N ASN C 99 1555 1555 1.33 LINK C GLU C 136 N AMSE C 137 1555 1555 1.34 LINK C GLU C 136 N BMSE C 137 1555 1555 1.34 LINK C AMSE C 137 N VAL C 138 1555 1555 1.33 LINK C BMSE C 137 N VAL C 138 1555 1555 1.33 LINK C AMSE D 1 N GLN D 2 1555 1555 1.34 LINK C BMSE D 1 N GLN D 2 1555 1555 1.35 LINK C TYR D 97 N MSE D 98 1555 1555 1.33 LINK C MSE D 98 N ASN D 99 1555 1555 1.34 LINK C GLU D 136 N AMSE D 137 1555 1555 1.34 LINK C GLU D 136 N BMSE D 137 1555 1555 1.34 LINK C AMSE D 137 N VAL D 138 1555 1555 1.33 LINK C BMSE D 137 N VAL D 138 1555 1555 1.33 LINK MG MG B 139 O HOH B 140 1555 1555 2.05 LINK MG MG B 139 O HOH B 141 1555 1555 1.99 LINK MG MG B 139 O HOH B 142 1555 1555 2.22 LINK MG MG B 139 O HOH B 145 1555 1555 1.92 LINK MG MG B 139 O HOH B 146 1555 1555 2.01 SITE 1 AC1 6 HOH B 140 HOH B 141 HOH B 142 HOH B 145 SITE 2 AC1 6 HOH B 146 GLU C 92 SITE 1 AC2 5 ASN B 11 ASN C 109 LYS C 111 THR C 112 SITE 2 AC2 5 HOH C 172 SITE 1 AC3 6 ASN B 31 LYS C 51 ILE C 52 HIS C 53 SITE 2 AC3 6 ILE C 67 HOH C 257 SITE 1 AC4 3 GLY C 131 GLU D 8 ASN D 12 CRYST1 41.974 56.943 62.561 107.00 103.03 100.21 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023824 0.004289 0.007463 0.00000 SCALE2 0.000000 0.017844 0.006594 0.00000 SCALE3 0.000000 0.000000 0.017491 0.00000