HEADER TRANSFERASE 09-OCT-09 3K6R TITLE CRYSTAL STRUCTURE OF PUTATIVE TRANSFERASE PH0793 FROM PYROCOCCUS TITLE 2 HORIKOSHII COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE TRANSFERASE PH0793; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_TAXID: 53953; SOURCE 4 STRAIN: OT3; SOURCE 5 GENE: PH0793; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) DERIVATIVES KEYWDS STRUCTURAL GENOMICS, PYROCOCCUS HORIKOSHII, TRANSFERASE, PSI, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, KEYWDS 3 UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,T.SKARINA,A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK,MIDWEST CENTER AUTHOR 2 FOR STRUCTURAL GENOMICS (MCSG) REVDAT 2 13-JUL-11 3K6R 1 VERSN REVDAT 1 20-OCT-09 3K6R 0 SPRSDE 20-OCT-09 3K6R 2FRN JRNL AUTH C.CHANG,T.SKARINA,A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF PROTEIN PH0793 FROM PYROCOCCUS JRNL TITL 2 HORIKOSHII JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 18174 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 932 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1078 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.99 REMARK 3 BIN R VALUE (WORKING SET) : 0.2290 REMARK 3 BIN FREE R VALUE SET COUNT : 51 REMARK 3 BIN FREE R VALUE : 0.2770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2116 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 93 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 35.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.18000 REMARK 3 B22 (A**2) : -1.71000 REMARK 3 B33 (A**2) : -1.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.23000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.233 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.198 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.144 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.682 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2162 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2921 ; 1.407 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 259 ; 6.004 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 91 ;29.759 ;23.077 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 403 ;15.128 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;13.666 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 332 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1579 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1310 ; 0.728 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2131 ; 1.277 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 852 ; 2.046 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 790 ; 3.207 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 191 A 278 REMARK 3 ORIGIN FOR THE GROUP (A): 20.3084 6.2093 -2.5071 REMARK 3 T TENSOR REMARK 3 T11: 0.0422 T22: 0.0472 REMARK 3 T33: 0.0812 T12: 0.0043 REMARK 3 T13: 0.0297 T23: 0.0262 REMARK 3 L TENSOR REMARK 3 L11: 2.8629 L22: 4.0972 REMARK 3 L33: 2.0359 L12: 0.9133 REMARK 3 L13: -0.2598 L23: 1.0289 REMARK 3 S TENSOR REMARK 3 S11: 0.0068 S12: -0.0024 S13: -0.0276 REMARK 3 S21: -0.1489 S22: 0.0428 S23: -0.4568 REMARK 3 S31: -0.0198 S32: 0.1763 S33: -0.0497 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 111 A 190 REMARK 3 ORIGIN FOR THE GROUP (A): 3.0826 3.4453 2.8430 REMARK 3 T TENSOR REMARK 3 T11: 0.0334 T22: 0.0562 REMARK 3 T33: 0.0617 T12: -0.0116 REMARK 3 T13: -0.0243 T23: -0.0104 REMARK 3 L TENSOR REMARK 3 L11: 1.2639 L22: 3.1975 REMARK 3 L33: 2.8636 L12: 0.3293 REMARK 3 L13: -0.9304 L23: 0.6588 REMARK 3 S TENSOR REMARK 3 S11: 0.0844 S12: 0.0789 S13: -0.0256 REMARK 3 S21: 0.0266 S22: -0.1479 S23: 0.1883 REMARK 3 S31: 0.0395 S32: -0.2122 S33: 0.0635 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 19 A 110 REMARK 3 ORIGIN FOR THE GROUP (A): 6.4694 14.0508 27.2207 REMARK 3 T TENSOR REMARK 3 T11: 0.3832 T22: 0.1728 REMARK 3 T33: 0.0283 T12: -0.1927 REMARK 3 T13: 0.0315 T23: 0.0180 REMARK 3 L TENSOR REMARK 3 L11: 1.6385 L22: 0.3285 REMARK 3 L33: 8.4662 L12: 0.1698 REMARK 3 L13: 1.9701 L23: 1.5154 REMARK 3 S TENSOR REMARK 3 S11: -0.1587 S12: 0.0046 S13: 0.0801 REMARK 3 S21: -0.0076 S22: 0.0209 S23: 0.0245 REMARK 3 S31: -0.5620 S32: 0.4778 S33: 0.1379 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3K6R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-OCT-09. REMARK 100 THE RCSB ID CODE IS RCSB055616. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97940 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18186 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 40.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.19200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.560 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, SHELXE, SOLVE/RESOLVE, ARP/WARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 10K, 0.1M MES PH 6, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 27.11550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 ARG A 2 REMARK 465 THR A 3 REMARK 465 GLN A 4 REMARK 465 GLY A 5 REMARK 465 ARG A 42 REMARK 465 HIS A 70 REMARK 465 ILE A 71 REMARK 465 HIS A 72 REMARK 465 GLY A 73 REMARK 465 GLU A 74 REMARK 465 THR A 75 REMARK 465 ARG A 76 REMARK 465 LYS A 77 REMARK 465 PRO A 78 REMARK 465 ASP A 79 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 28 CG CD CE NZ REMARK 470 GLU A 44 CG CD OE1 OE2 REMARK 470 LYS A 68 CG CD CE NZ REMARK 470 TYR A 80 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 225 O HOH A 314 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 17 -25.82 -144.69 REMARK 500 MSE A 198 67.02 -116.50 REMARK 500 LYS A 277 -173.50 -68.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 345 DISTANCE = 8.62 ANGSTROMS REMARK 525 HOH A 367 DISTANCE = 5.60 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC5737 RELATED DB: TARGETDB DBREF 3K6R A 1 278 UNP O58523 O58523_PYRHO 1 278 SEQRES 1 A 278 MSE ARG THR GLN GLY ILE LYS PRO ARG ILE ARG GLU ILE SEQRES 2 A 278 LEU SER LYS GLU LEU PRO GLU GLU LEU VAL LYS LEU LEU SEQRES 3 A 278 PRO LYS ARG TRP VAL ARG ILE GLY ASP VAL LEU LEU LEU SEQRES 4 A 278 PRO LEU ARG PRO GLU LEU GLU PRO TYR LYS HIS ARG ILE SEQRES 5 A 278 ALA GLU VAL TYR ALA GLU VAL LEU GLY VAL LYS THR VAL SEQRES 6 A 278 LEU ARG LYS GLY HIS ILE HIS GLY GLU THR ARG LYS PRO SEQRES 7 A 278 ASP TYR GLU LEU LEU TYR GLY SER ASP THR VAL THR VAL SEQRES 8 A 278 HIS VAL GLU ASN GLY ILE LYS TYR LYS LEU ASP VAL ALA SEQRES 9 A 278 LYS ILE MSE PHE SER PRO ALA ASN VAL LYS GLU ARG VAL SEQRES 10 A 278 ARG MSE ALA LYS VAL ALA LYS PRO ASP GLU LEU VAL VAL SEQRES 11 A 278 ASP MSE PHE ALA GLY ILE GLY HIS LEU SER LEU PRO ILE SEQRES 12 A 278 ALA VAL TYR GLY LYS ALA LYS VAL ILE ALA ILE GLU LYS SEQRES 13 A 278 ASP PRO TYR THR PHE LYS PHE LEU VAL GLU ASN ILE HIS SEQRES 14 A 278 LEU ASN LYS VAL GLU ASP ARG MSE SER ALA TYR ASN MSE SEQRES 15 A 278 ASP ASN ARG ASP PHE PRO GLY GLU ASN ILE ALA ASP ARG SEQRES 16 A 278 ILE LEU MSE GLY TYR VAL VAL ARG THR HIS GLU PHE ILE SEQRES 17 A 278 PRO LYS ALA LEU SER ILE ALA LYS ASP GLY ALA ILE ILE SEQRES 18 A 278 HIS TYR HIS ASN THR VAL PRO GLU LYS LEU MSE PRO ARG SEQRES 19 A 278 GLU PRO PHE GLU THR PHE LYS ARG ILE THR LYS GLU TYR SEQRES 20 A 278 GLY TYR ASP VAL GLU LYS LEU ASN GLU LEU LYS ILE LYS SEQRES 21 A 278 ARG TYR ALA PRO GLY VAL TRP HIS VAL VAL LEU ASP LEU SEQRES 22 A 278 ARG VAL PHE LYS SER MODRES 3K6R MSE A 107 MET SELENOMETHIONINE MODRES 3K6R MSE A 119 MET SELENOMETHIONINE MODRES 3K6R MSE A 132 MET SELENOMETHIONINE MODRES 3K6R MSE A 177 MET SELENOMETHIONINE MODRES 3K6R MSE A 182 MET SELENOMETHIONINE MODRES 3K6R MSE A 198 MET SELENOMETHIONINE MODRES 3K6R MSE A 232 MET SELENOMETHIONINE HET MSE A 107 8 HET MSE A 119 8 HET MSE A 132 8 HET MSE A 177 8 HET MSE A 182 8 HET MSE A 198 8 HET MSE A 232 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 2 HOH *93(H2 O) HELIX 1 1 ILE A 6 SER A 15 1 10 HELIX 2 2 PRO A 19 LEU A 26 5 8 HELIX 3 3 LEU A 45 PRO A 47 5 3 HELIX 4 4 TYR A 48 GLY A 61 1 14 HELIX 5 5 SER A 109 ALA A 111 5 3 HELIX 6 6 ASN A 112 ALA A 123 1 12 HELIX 7 7 LEU A 139 TYR A 146 1 8 HELIX 8 8 ASP A 157 ASN A 171 1 15 HELIX 9 9 ARG A 203 GLU A 206 5 4 HELIX 10 10 PHE A 207 ILE A 214 1 8 HELIX 11 11 LYS A 230 MSE A 232 5 3 HELIX 12 12 PRO A 236 TYR A 247 1 12 SHEET 1 A 4 VAL A 31 ILE A 33 0 SHEET 2 A 4 VAL A 36 LEU A 39 -1 O LEU A 38 N VAL A 31 SHEET 3 A 4 THR A 64 ARG A 67 1 O LEU A 66 N LEU A 39 SHEET 4 A 4 GLU A 81 TYR A 84 -1 O LEU A 83 N VAL A 65 SHEET 1 B 2 VAL A 89 GLU A 94 0 SHEET 2 B 2 ILE A 97 ASP A 102 -1 O TYR A 99 N HIS A 92 SHEET 1 C 7 MSE A 177 TYR A 180 0 SHEET 2 C 7 LYS A 150 ILE A 154 1 N ALA A 153 O SER A 178 SHEET 3 C 7 LEU A 128 ASP A 131 1 N ASP A 131 O ILE A 152 SHEET 4 C 7 ALA A 193 MSE A 198 1 O LEU A 197 N VAL A 130 SHEET 5 C 7 ALA A 215 PRO A 228 1 O HIS A 222 N ILE A 196 SHEET 6 C 7 VAL A 266 PHE A 276 -1 O TRP A 267 N VAL A 227 SHEET 7 C 7 ASP A 250 TYR A 262 -1 N GLU A 252 O ARG A 274 LINK C ILE A 106 N MSE A 107 1555 1555 1.33 LINK C MSE A 107 N PHE A 108 1555 1555 1.33 LINK C ARG A 118 N MSE A 119 1555 1555 1.33 LINK C MSE A 119 N ALA A 120 1555 1555 1.33 LINK C ASP A 131 N MSE A 132 1555 1555 1.34 LINK C MSE A 132 N PHE A 133 1555 1555 1.32 LINK C ARG A 176 N MSE A 177 1555 1555 1.33 LINK C MSE A 177 N SER A 178 1555 1555 1.34 LINK C ASN A 181 N MSE A 182 1555 1555 1.33 LINK C MSE A 182 N ASP A 183 1555 1555 1.33 LINK C LEU A 197 N MSE A 198 1555 1555 1.33 LINK C MSE A 198 N GLY A 199 1555 1555 1.33 LINK C LEU A 231 N MSE A 232 1555 1555 1.33 LINK C MSE A 232 N PRO A 233 1555 1555 1.35 CISPEP 1 MSE A 232 PRO A 233 0 2.75 CISPEP 2 GLU A 235 PRO A 236 0 4.88 CISPEP 3 ALA A 263 PRO A 264 0 -2.04 CRYST1 51.308 54.231 58.613 90.00 100.02 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019490 0.000000 0.003445 0.00000 SCALE2 0.000000 0.018440 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017325 0.00000