HEADER IMMUNE SYSTEM, RNA BINDING PROTEIN 13-OCT-09 3K7U TITLE STRUCTURE OF ESSENTIAL PROTEIN FROM TRYPANOSOMA BRUCEI COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTIBODY; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: MP18 RNA EDITING COMPLEX PROTEIN; COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 3 ORGANISM_TAXID: 9844; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI; SOURCE 8 ORGANISM_TAXID: 5691; SOURCE 9 GENE: TB10.70.2090; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RNA-EDITING, OB-FOLD, RNA-EDITING PROTEINS, KINETOPLASTIDS, IMMUNE KEYWDS 2 SYSTEM, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.WU REVDAT 3 06-SEP-23 3K7U 1 SEQADV REVDAT 2 06-APR-11 3K7U 1 JRNL REVDAT 1 17-NOV-10 3K7U 0 JRNL AUTH M.WU,Y.J.PARK,E.PARDON,S.TURLEY,A.HAYHURST,J.DENG, JRNL AUTH 2 J.STEYAERT,W.G.HOL JRNL TITL STRUCTURES OF A KEY INTERACTION PROTEIN FROM THE TRYPANOSOMA JRNL TITL 2 BRUCEI EDITOSOME IN COMPLEX WITH SINGLE DOMAIN ANTIBODIES. JRNL REF J.STRUCT.BIOL. V. 174 124 2011 JRNL REFN ISSN 1047-8477 JRNL PMID 20969962 JRNL DOI 10.1016/J.JSB.2010.10.007 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0095 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 14154 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 752 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1023 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.64 REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE SET COUNT : 52 REMARK 3 BIN FREE R VALUE : 0.3840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1668 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 70 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.06000 REMARK 3 B22 (A**2) : 0.18000 REMARK 3 B33 (A**2) : -0.29000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.07000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.215 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.200 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.154 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.041 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1717 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1137 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2333 ; 1.842 ; 1.929 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2760 ; 1.000 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 217 ; 6.892 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 82 ;34.048 ;24.024 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 267 ;16.406 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;18.746 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 259 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1948 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 360 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1075 ; 1.107 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 447 ; 0.279 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1729 ; 1.965 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 642 ; 2.729 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 602 ; 4.152 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 29 REMARK 3 ORIGIN FOR THE GROUP (A): 21.9075 -47.5693 8.3052 REMARK 3 T TENSOR REMARK 3 T11: 0.2963 T22: 0.3002 REMARK 3 T33: 0.3058 T12: 0.0130 REMARK 3 T13: 0.0411 T23: 0.0335 REMARK 3 L TENSOR REMARK 3 L11: 1.9653 L22: 2.4545 REMARK 3 L33: 2.2530 L12: -0.2031 REMARK 3 L13: 0.1239 L23: 0.2053 REMARK 3 S TENSOR REMARK 3 S11: 0.0705 S12: -0.0321 S13: -0.0488 REMARK 3 S21: 0.2251 S22: 0.0740 S23: -0.2377 REMARK 3 S31: 0.0662 S32: 0.2410 S33: -0.1445 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 30 A 42 REMARK 3 ORIGIN FOR THE GROUP (A): 25.9768 -41.0861 2.9623 REMARK 3 T TENSOR REMARK 3 T11: 0.2100 T22: 0.2185 REMARK 3 T33: 0.2453 T12: 0.0004 REMARK 3 T13: -0.0100 T23: 0.0417 REMARK 3 L TENSOR REMARK 3 L11: 2.4967 L22: 3.3259 REMARK 3 L33: 2.4682 L12: -0.1305 REMARK 3 L13: -0.2983 L23: 1.1907 REMARK 3 S TENSOR REMARK 3 S11: -0.0067 S12: -0.0346 S13: 0.0251 REMARK 3 S21: 0.1405 S22: 0.0158 S23: -0.0127 REMARK 3 S31: 0.1667 S32: 0.0208 S33: -0.0090 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 43 A 46 REMARK 3 ORIGIN FOR THE GROUP (A): 31.1757 -43.0350 -6.0552 REMARK 3 T TENSOR REMARK 3 T11: 0.2780 T22: 0.2360 REMARK 3 T33: 0.2753 T12: -0.0080 REMARK 3 T13: -0.0213 T23: 0.0142 REMARK 3 L TENSOR REMARK 3 L11: 7.6884 L22: 9.0989 REMARK 3 L33: 3.8397 L12: -1.4155 REMARK 3 L13: -5.2920 L23: 0.6825 REMARK 3 S TENSOR REMARK 3 S11: 0.0367 S12: -0.0926 S13: -0.2068 REMARK 3 S21: 0.1030 S22: -0.0379 S23: -0.0379 REMARK 3 S31: 0.1538 S32: 0.0295 S33: 0.0012 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 47 A 62 REMARK 3 ORIGIN FOR THE GROUP (A): 19.5581 -33.1213 3.9473 REMARK 3 T TENSOR REMARK 3 T11: 0.1526 T22: 0.1567 REMARK 3 T33: 0.1815 T12: -0.0038 REMARK 3 T13: -0.0034 T23: 0.0132 REMARK 3 L TENSOR REMARK 3 L11: 2.8878 L22: 3.4675 REMARK 3 L33: 1.0138 L12: -0.5459 REMARK 3 L13: -1.0163 L23: 0.8402 REMARK 3 S TENSOR REMARK 3 S11: 0.0099 S12: -0.0833 S13: 0.0740 REMARK 3 S21: 0.0803 S22: -0.0042 S23: 0.0132 REMARK 3 S31: -0.0418 S32: -0.0163 S33: -0.0057 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 63 A 75 REMARK 3 ORIGIN FOR THE GROUP (A): 15.6873 -39.2912 3.5769 REMARK 3 T TENSOR REMARK 3 T11: 0.1875 T22: 0.1798 REMARK 3 T33: 0.2461 T12: 0.0072 REMARK 3 T13: 0.0055 T23: 0.0109 REMARK 3 L TENSOR REMARK 3 L11: 2.5681 L22: 2.3961 REMARK 3 L33: 2.5320 L12: 0.1560 REMARK 3 L13: -0.3504 L23: 0.2164 REMARK 3 S TENSOR REMARK 3 S11: 0.0073 S12: -0.0087 S13: -0.0086 REMARK 3 S21: 0.0230 S22: -0.0086 S23: 0.0052 REMARK 3 S31: 0.0928 S32: -0.0959 S33: 0.0013 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 76 A 94 REMARK 3 ORIGIN FOR THE GROUP (A): 18.0800 -46.1096 1.7935 REMARK 3 T TENSOR REMARK 3 T11: 0.2260 T22: 0.1945 REMARK 3 T33: 0.2861 T12: -0.0116 REMARK 3 T13: 0.0091 T23: 0.0344 REMARK 3 L TENSOR REMARK 3 L11: 3.2253 L22: 2.6496 REMARK 3 L33: 1.9333 L12: -0.4195 REMARK 3 L13: -0.3499 L23: 0.3115 REMARK 3 S TENSOR REMARK 3 S11: 0.0066 S12: 0.0043 S13: 0.0703 REMARK 3 S21: 0.0142 S22: -0.0740 S23: 0.0927 REMARK 3 S31: -0.0511 S32: -0.2033 S33: 0.0674 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 95 A 108 REMARK 3 ORIGIN FOR THE GROUP (A): 30.0308 -34.5801 4.5625 REMARK 3 T TENSOR REMARK 3 T11: 0.1964 T22: 0.2131 REMARK 3 T33: 0.1978 T12: -0.0010 REMARK 3 T13: -0.0043 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 2.9432 L22: 3.3639 REMARK 3 L33: 2.3895 L12: -0.6795 REMARK 3 L13: -0.7294 L23: -1.5087 REMARK 3 S TENSOR REMARK 3 S11: 0.0233 S12: -0.2427 S13: 0.1457 REMARK 3 S21: 0.2664 S22: -0.0085 S23: -0.0868 REMARK 3 S31: -0.1329 S32: 0.0729 S33: -0.0148 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 109 A 121 REMARK 3 ORIGIN FOR THE GROUP (A): 27.9294 -46.2128 3.8932 REMARK 3 T TENSOR REMARK 3 T11: 0.2162 T22: 0.2401 REMARK 3 T33: 0.2167 T12: 0.0172 REMARK 3 T13: 0.0243 T23: 0.0160 REMARK 3 L TENSOR REMARK 3 L11: 2.2625 L22: 6.0279 REMARK 3 L33: 0.9775 L12: 2.1413 REMARK 3 L13: 0.3034 L23: 1.5728 REMARK 3 S TENSOR REMARK 3 S11: 0.0829 S12: -0.0708 S13: -0.1489 REMARK 3 S21: 0.1580 S22: -0.0382 S23: -0.1361 REMARK 3 S31: 0.1371 S32: -0.0710 S33: -0.0446 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 16 REMARK 3 ORIGIN FOR THE GROUP (A): 9.0772 -21.3104 -0.4151 REMARK 3 T TENSOR REMARK 3 T11: 0.2232 T22: 0.2019 REMARK 3 T33: 0.1846 T12: 0.0240 REMARK 3 T13: -0.0278 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 2.4474 L22: 1.8309 REMARK 3 L33: 1.7274 L12: -0.4968 REMARK 3 L13: -0.0290 L23: 0.8700 REMARK 3 S TENSOR REMARK 3 S11: 0.0920 S12: -0.1785 S13: 0.0524 REMARK 3 S21: 0.0724 S22: -0.0999 S23: -0.1502 REMARK 3 S31: -0.2256 S32: 0.2296 S33: 0.0078 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 17 C 23 REMARK 3 ORIGIN FOR THE GROUP (A): 13.4544 -10.9691 14.5528 REMARK 3 T TENSOR REMARK 3 T11: 0.5155 T22: 0.5151 REMARK 3 T33: 0.5419 T12: 0.0170 REMARK 3 T13: 0.0420 T23: -0.0369 REMARK 3 L TENSOR REMARK 3 L11: 1.9483 L22: 0.5479 REMARK 3 L33: 5.1560 L12: -0.6945 REMARK 3 L13: -2.9044 L23: 1.2292 REMARK 3 S TENSOR REMARK 3 S11: 0.0976 S12: -0.2120 S13: 0.2670 REMARK 3 S21: 0.1959 S22: 0.0016 S23: 0.2213 REMARK 3 S31: -0.3215 S32: -0.2311 S33: -0.0992 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 24 C 47 REMARK 3 ORIGIN FOR THE GROUP (A): 10.1534 -18.4615 -4.0218 REMARK 3 T TENSOR REMARK 3 T11: 0.1701 T22: 0.1755 REMARK 3 T33: 0.2472 T12: 0.0078 REMARK 3 T13: 0.0484 T23: 0.0239 REMARK 3 L TENSOR REMARK 3 L11: 3.5384 L22: 4.3392 REMARK 3 L33: 8.2069 L12: 0.7463 REMARK 3 L13: 1.8821 L23: 2.0261 REMARK 3 S TENSOR REMARK 3 S11: -0.1241 S12: -0.0634 S13: 0.1237 REMARK 3 S21: -0.1673 S22: -0.0942 S23: 0.1988 REMARK 3 S31: -0.1854 S32: -0.3831 S33: 0.2183 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 48 C 68 REMARK 3 ORIGIN FOR THE GROUP (A): 14.9875 -19.3439 4.6877 REMARK 3 T TENSOR REMARK 3 T11: 0.1644 T22: 0.1265 REMARK 3 T33: 0.1782 T12: -0.0202 REMARK 3 T13: 0.0196 T23: -0.0101 REMARK 3 L TENSOR REMARK 3 L11: 4.1749 L22: 2.2356 REMARK 3 L33: 3.2080 L12: -1.0771 REMARK 3 L13: 2.1377 L23: -0.9979 REMARK 3 S TENSOR REMARK 3 S11: -0.0414 S12: -0.0671 S13: 0.1104 REMARK 3 S21: 0.0747 S22: 0.0042 S23: -0.0408 REMARK 3 S31: -0.1055 S32: 0.0350 S33: 0.0373 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 69 C 82 REMARK 3 ORIGIN FOR THE GROUP (A): 9.4386 -22.0069 1.5748 REMARK 3 T TENSOR REMARK 3 T11: 0.2196 T22: 0.1644 REMARK 3 T33: 0.1567 T12: -0.0135 REMARK 3 T13: -0.0553 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 4.7185 L22: 4.0541 REMARK 3 L33: 3.2488 L12: -0.4854 REMARK 3 L13: -0.3896 L23: 0.0116 REMARK 3 S TENSOR REMARK 3 S11: 0.0791 S12: -0.2890 S13: 0.1583 REMARK 3 S21: 0.1446 S22: -0.0094 S23: 0.1440 REMARK 3 S31: -0.2051 S32: -0.0154 S33: -0.0696 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 83 C 95 REMARK 3 ORIGIN FOR THE GROUP (A): 1.1917 -3.4837 8.3665 REMARK 3 T TENSOR REMARK 3 T11: 0.7548 T22: 0.5822 REMARK 3 T33: 0.7314 T12: 0.0451 REMARK 3 T13: 0.0102 T23: -0.1133 REMARK 3 L TENSOR REMARK 3 L11: 0.4605 L22: 0.0142 REMARK 3 L33: 0.4328 L12: 0.0599 REMARK 3 L13: 0.0229 L23: -0.0484 REMARK 3 S TENSOR REMARK 3 S11: 0.0150 S12: -0.2808 S13: 0.5342 REMARK 3 S21: 0.0670 S22: -0.0146 S23: 0.0785 REMARK 3 S31: -0.5636 S32: -0.1165 S33: -0.0004 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 96 C 111 REMARK 3 ORIGIN FOR THE GROUP (A): 8.2661 -22.5866 5.9872 REMARK 3 T TENSOR REMARK 3 T11: 0.1622 T22: 0.2033 REMARK 3 T33: 0.2058 T12: -0.0533 REMARK 3 T13: -0.0241 T23: -0.0171 REMARK 3 L TENSOR REMARK 3 L11: 3.4088 L22: 3.8164 REMARK 3 L33: 4.4536 L12: -1.3666 REMARK 3 L13: -0.8044 L23: -0.1840 REMARK 3 S TENSOR REMARK 3 S11: -0.1476 S12: -0.2478 S13: -0.0270 REMARK 3 S21: 0.3630 S22: 0.1398 S23: 0.3559 REMARK 3 S31: -0.1128 S32: -0.2685 S33: 0.0078 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 112 C 115 REMARK 3 ORIGIN FOR THE GROUP (A): 24.7459 -31.1455 -10.3334 REMARK 3 T TENSOR REMARK 3 T11: 0.6799 T22: 0.7277 REMARK 3 T33: 0.6895 T12: -0.1186 REMARK 3 T13: 0.2299 T23: 0.1694 REMARK 3 L TENSOR REMARK 3 L11: 3.1749 L22: 0.7997 REMARK 3 L33: 11.8106 L12: 0.4669 REMARK 3 L13: -5.3007 L23: -1.0991 REMARK 3 S TENSOR REMARK 3 S11: 0.2310 S12: 0.4143 S13: 0.4979 REMARK 3 S21: -0.5025 S22: 0.0047 S23: -0.4849 REMARK 3 S31: -0.7740 S32: 0.6317 S33: -0.2357 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3K7U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000055655. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15229 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04500 REMARK 200 FOR THE DATA SET : 30.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 76.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.50400 REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: PDB ENTRY 3K80 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG2000, 0.1 M BIS-TRIS, PH 6.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 61.68100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.17950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 61.68100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.17950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 1 REMARK 465 VAL A 2 REMARK 465 SER A 122 REMARK 465 HIS A 123 REMARK 465 HIS A 124 REMARK 465 HIS A 125 REMARK 465 HIS A 126 REMARK 465 HIS A 127 REMARK 465 HIS A 128 REMARK 465 GLY C 17 REMARK 465 MET C 18 REMARK 465 SER C 19 REMARK 465 LYS C 20 REMARK 465 ASP C 55 REMARK 465 THR C 56 REMARK 465 THR C 57 REMARK 465 HIS C 58 REMARK 465 PRO C 59 REMARK 465 THR C 60 REMARK 465 GLN C 61 REMARK 465 GLU C 62 REMARK 465 VAL C 63 REMARK 465 VAL C 64 REMARK 465 VAL C 65 REMARK 465 CYS C 109 REMARK 465 ASN C 110 REMARK 465 LYS C 111 REMARK 465 HIS C 112 REMARK 465 PHE C 113 REMARK 465 ARG C 135 REMARK 465 THR C 136 REMARK 465 VAL C 137 REMARK 465 PRO C 138 REMARK 465 ALA C 139 REMARK 465 ALA C 140 REMARK 465 VAL C 141 REMARK 465 ASN C 142 REMARK 465 PRO C 143 REMARK 465 ALA C 144 REMARK 465 VAL C 145 REMARK 465 GLU C 146 REMARK 465 ASP C 147 REMARK 465 ILE C 148 REMARK 465 LYS C 149 REMARK 465 SER C 150 REMARK 465 GLU C 151 REMARK 465 LYS C 152 REMARK 465 GLU C 153 REMARK 465 GLY C 154 REMARK 465 SER C 155 REMARK 465 GLY C 156 REMARK 465 GLY C 157 REMARK 465 ASP C 158 REMARK 465 GLN C 159 REMARK 465 SER C 160 REMARK 465 GLY C 161 REMARK 465 VAL C 162 REMARK 465 PRO C 163 REMARK 465 SER C 164 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR C 114 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD21 ASN C 96 O HOH C 175 1.55 REMARK 500 CG2 ILE A 70 O HOH A 169 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 67 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 67 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG A 99 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ASP C 33 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 31 11.54 57.54 REMARK 500 ARG A 99 76.12 74.85 REMARK 500 VAL C 39 -72.07 -75.41 REMARK 500 TYR C 40 -92.69 -101.24 REMARK 500 GLN C 104 -123.80 43.97 REMARK 500 LEU C 105 18.81 47.26 REMARK 500 GLU C 106 -15.48 -158.67 REMARK 500 PHE C 115 -75.53 -15.08 REMARK 500 ASP C 133 -170.18 81.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3K80 RELATED DB: PDB REMARK 900 RELATED ID: 3K81 RELATED DB: PDB DBREF 3K7U A 1 128 PDB 3K7U 3K7U 1 128 DBREF 3K7U C 20 164 UNP Q38B90 Q38B90_9TRYP 20 164 SEQADV 3K7U GLY C 17 UNP Q38B90 EXPRESSION TAG SEQADV 3K7U MET C 18 UNP Q38B90 EXPRESSION TAG SEQADV 3K7U SER C 19 UNP Q38B90 EXPRESSION TAG SEQRES 1 A 128 GLN VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 A 128 ALA GLY GLY SER LEU THR LEU SER CYS ALA ALA SER GLY SEQRES 3 A 128 ARG THR PHE SER ASN ASN ALA MET GLY TRP PHE ARG GLN SEQRES 4 A 128 ALA PRO GLY LYS GLU ARG GLU PHE VAL ALA ALA ILE SER SEQRES 5 A 128 TRP THR GLY GLY LEU LEU PHE TYR ALA ASP SER VAL ASN SEQRES 6 A 128 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ARG THR SEQRES 7 A 128 VAL THR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR SEQRES 8 A 128 ALA VAL TYR TYR CYS ALA ALA ARG PRO GLN GLY ASP TYR SEQRES 9 A 128 VAL THR ALA HIS TYR ASP TYR TRP GLY GLN GLY THR GLN SEQRES 10 A 128 VAL THR VAL SER SER HIS HIS HIS HIS HIS HIS SEQRES 1 C 148 GLY MET SER LYS SER VAL ASN SER VAL THR LEU VAL GLY SEQRES 2 C 148 VAL VAL HIS ASP ILE GLN SER GLY PHE VAL TYR GLU ASP SEQRES 3 C 148 ALA VAL THR GLN PHE THR LEU THR THR THR SER ILE ASP SEQRES 4 C 148 THR THR HIS PRO THR GLN GLU VAL VAL VAL GLU LYS ASP SEQRES 5 C 148 HIS HIS THR ILE ARG CYS PHE GLY GLU LEU PHE SER ALA SEQRES 6 C 148 GLU VAL LYS GLN LYS VAL LYS GLU GLY ASN VAL VAL CYS SEQRES 7 C 148 VAL ASN GLY ARG LEU ARG LEU SER PRO GLN LEU GLU PRO SEQRES 8 C 148 SER CYS ASN LYS HIS PHE TYR PHE PRO TYR ILE GLN VAL SEQRES 9 C 148 GLN PRO PRO HIS GLY GLN VAL ALA VAL ILE HIS GLY ASP SEQRES 10 C 148 ARG ARG THR VAL PRO ALA ALA VAL ASN PRO ALA VAL GLU SEQRES 11 C 148 ASP ILE LYS SER GLU LYS GLU GLY SER GLY GLY ASP GLN SEQRES 12 C 148 SER GLY VAL PRO SER FORMUL 3 HOH *70(H2 O) HELIX 1 1 SER A 25 SER A 30 1 6 HELIX 2 2 LYS A 87 THR A 91 5 5 HELIX 3 3 GLY C 76 VAL C 87 1 12 SHEET 1 A 4 LEU A 4 SER A 7 0 SHEET 2 A 4 LEU A 18 ALA A 24 -1 O ALA A 23 N GLN A 5 SHEET 3 A 4 THR A 78 MET A 83 -1 O MET A 83 N LEU A 18 SHEET 4 A 4 PHE A 68 ASP A 73 -1 N THR A 69 O GLN A 82 SHEET 1 B 9 GLY A 10 GLN A 13 0 SHEET 2 B 9 THR A 116 SER A 121 1 O THR A 119 N GLY A 10 SHEET 3 B 9 ALA A 92 PRO A 100 -1 N TYR A 94 O THR A 116 SHEET 4 B 9 MET A 34 GLN A 39 -1 N GLY A 35 O ALA A 97 SHEET 5 B 9 GLU A 46 ILE A 51 -1 O ALA A 49 N TRP A 36 SHEET 6 B 9 LEU A 57 ALA A 61 -1 O ALA A 61 N VAL A 48 SHEET 7 B 9 GLN C 126 HIS C 131 1 O HIS C 131 N TYR A 60 SHEET 8 B 9 VAL C 92 LEU C 101 -1 N CYS C 94 O ALA C 128 SHEET 9 B 9 TYR A 109 TRP A 112 0 SHEET 1 C 9 GLY A 10 GLN A 13 0 SHEET 2 C 9 THR A 116 SER A 121 1 O THR A 119 N GLY A 10 SHEET 3 C 9 ALA A 92 PRO A 100 -1 N TYR A 94 O THR A 116 SHEET 4 C 9 PRO C 116 VAL C 120 0 SHEET 5 C 9 LYS C 67 PHE C 75 1 N ARG C 73 O VAL C 120 SHEET 6 C 9 ALA C 43 THR C 52 -1 N PHE C 47 O ILE C 72 SHEET 7 C 9 VAL C 25 PHE C 38 -1 N GLN C 35 O GLN C 46 SHEET 8 C 9 VAL C 92 LEU C 101 -1 O VAL C 95 N LEU C 27 SHEET 9 C 9 TYR A 109 TRP A 112 0 SSBOND 1 CYS A 22 CYS A 96 1555 1555 2.07 CISPEP 1 PRO C 107 SER C 108 0 -7.74 CISPEP 2 PRO C 122 PRO C 123 0 0.22 CRYST1 123.362 50.359 44.150 90.00 108.97 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008106 0.000000 0.002786 0.00000 SCALE2 0.000000 0.019857 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023950 0.00000