HEADER TRANSFERASE 13-OCT-09 3K85 TITLE CRYSTAL STRUCTURE OF A D-GLYCERO-D-MANNO-HEPTOSE 1-PHOSPHATE KINASE TITLE 2 FROM BACTERIODES THETAIOTAOMICRON COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-GLYCERO-D-MANNO-HEPTOSE 1-PHOSPHATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON; SOURCE 3 ORGANISM_TAXID: 818; SOURCE 4 GENE: BT-0704, BT_0474; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: BC-PSGX3 (BC) KEYWDS KINASE, BACTERIODES THETAIOTAOMICRON, PROTEIN STRUCTURE INITIATIVE KEYWDS 2 II(PSI II), NYSGXRC, 11277B, STRUCTURAL GENOMICS, NEW YORK SGX KEYWDS 3 RESEARCH CENTER FOR STRUCTURAL GENOMICS, ATP-BINDING, NUCLEOTIDE- KEYWDS 4 BINDING, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.PALANI,D.KUMARAN,S.K.BURLEY,S.SWAMINATHAN,NEW YORK SGX RESEARCH AUTHOR 2 CENTER FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 2 10-FEB-21 3K85 1 AUTHOR JRNL LINK REVDAT 1 08-DEC-09 3K85 0 JRNL AUTH K.PALANI,D.KUMARAN,S.K.BURLEY,S.SWAMINATHAN JRNL TITL CRYSTAL STRUCTURE OF A D-GLYCERO-D-MANNO-HEPTOSE 1-PHOSPHATE JRNL TITL 2 KINASE FROM BACTERIODES THETAIOTAOMICRON JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 98691.740 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.1 REMARK 3 NUMBER OF REFLECTIONS : 33035 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.254 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1677 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.28 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.42 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4651 REMARK 3 BIN R VALUE (WORKING SET) : 0.3210 REMARK 3 BIN FREE R VALUE : 0.3700 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 269 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.023 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4742 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 137 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.91000 REMARK 3 B22 (A**2) : 15.49000 REMARK 3 B33 (A**2) : -11.58000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.34 REMARK 3 ESD FROM SIGMAA (A) : 0.36 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.40 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.41 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.750 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.31 REMARK 3 BSOL : 33.76 REMARK 3 REMARK 3 NCS MODEL : NONE REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3K85 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000055666. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI(III) CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38392 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.280 REMARK 200 RESOLUTION RANGE LOW (A) : 40.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 24.30 REMARK 200 R MERGE (I) : 0.11600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : 21.60 REMARK 200 R MERGE FOR SHELL (I) : 0.56900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD, SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM SULFATE, 0.1M HEPES, 25% REMARK 280 PEG 3350, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.54400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.54400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.94450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 74.73450 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.94450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 74.73450 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 70.54400 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.94450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 74.73450 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 70.54400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.94450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 74.73450 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 49590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 211.63200 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 0 REMARK 465 SER A 1 REMARK 465 GLY A 204 REMARK 465 ARG A 205 REMARK 465 SER A 206 REMARK 465 ARG A 207 REMARK 465 SER A 208 REMARK 465 SER A 209 REMARK 465 ALA A 210 REMARK 465 ALA A 211 REMARK 465 ILE A 212 REMARK 465 ILE A 213 REMARK 465 ASN A 214 REMARK 465 GLU A 215 REMARK 465 GLN A 216 REMARK 465 LYS A 217 REMARK 465 LYS A 218 REMARK 465 ASN A 219 REMARK 465 THR A 220 REMARK 465 SER A 221 REMARK 465 GLU A 222 REMARK 465 GLY A 223 REMARK 465 ASN A 224 REMARK 465 MSE A 267 REMARK 465 ALA A 268 REMARK 465 GLY A 269 REMARK 465 ALA A 270 REMARK 465 ILE A 271 REMARK 465 THR A 272 REMARK 465 ASN A 273 REMARK 465 PRO A 274 REMARK 465 MSE A 275 REMARK 465 ILE A 276 REMARK 465 GLN A 277 REMARK 465 GLY A 297 REMARK 465 GLY A 298 REMARK 465 GLY A 299 REMARK 465 THR A 343 REMARK 465 ASP A 344 REMARK 465 LYS A 345 REMARK 465 VAL A 346 REMARK 465 GLN A 347 REMARK 465 LYS A 348 REMARK 465 GLU A 349 REMARK 465 GLY A 350 REMARK 465 HIS A 351 REMARK 465 HIS A 352 REMARK 465 HIS A 353 REMARK 465 HIS A 354 REMARK 465 HIS A 355 REMARK 465 HIS A 356 REMARK 465 MSE B 0 REMARK 465 SER B 1 REMARK 465 GLY B 204 REMARK 465 ARG B 205 REMARK 465 SER B 206 REMARK 465 ARG B 207 REMARK 465 SER B 208 REMARK 465 SER B 209 REMARK 465 ALA B 210 REMARK 465 ALA B 211 REMARK 465 ILE B 212 REMARK 465 ILE B 213 REMARK 465 ASN B 214 REMARK 465 GLU B 215 REMARK 465 GLN B 216 REMARK 465 LYS B 217 REMARK 465 LYS B 218 REMARK 465 ASN B 219 REMARK 465 THR B 220 REMARK 465 SER B 221 REMARK 465 GLU B 222 REMARK 465 GLY B 223 REMARK 465 ASN B 224 REMARK 465 MSE B 267 REMARK 465 ALA B 268 REMARK 465 GLY B 269 REMARK 465 ALA B 270 REMARK 465 ILE B 271 REMARK 465 THR B 272 REMARK 465 ASN B 273 REMARK 465 PRO B 274 REMARK 465 MSE B 275 REMARK 465 ILE B 276 REMARK 465 GLN B 277 REMARK 465 GLY B 297 REMARK 465 GLY B 298 REMARK 465 GLY B 299 REMARK 465 THR B 343 REMARK 465 ASP B 344 REMARK 465 LYS B 345 REMARK 465 VAL B 346 REMARK 465 GLN B 347 REMARK 465 LYS B 348 REMARK 465 GLU B 349 REMARK 465 GLY B 350 REMARK 465 HIS B 351 REMARK 465 HIS B 352 REMARK 465 HIS B 353 REMARK 465 HIS B 354 REMARK 465 HIS B 355 REMARK 465 HIS B 356 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 37 31.23 -67.87 REMARK 500 SER A 110 -82.07 44.54 REMARK 500 LYS A 149 -71.45 -97.05 REMARK 500 ASP A 177 65.31 16.58 REMARK 500 ALA A 227 -177.04 -58.83 REMARK 500 ILE A 228 -47.11 73.04 REMARK 500 ALA A 279 -130.67 -67.25 REMARK 500 ALA A 288 -152.69 -159.11 REMARK 500 PHE A 301 104.54 179.20 REMARK 500 ALA B 14 148.54 -177.30 REMARK 500 ASN B 37 39.91 -67.86 REMARK 500 ASN B 55 77.11 -118.12 REMARK 500 GLN B 60 61.42 30.53 REMARK 500 SER B 67 90.67 -66.45 REMARK 500 SER B 110 -33.13 57.38 REMARK 500 LYS B 149 -72.98 -121.22 REMARK 500 ASP B 177 42.92 20.81 REMARK 500 ALA B 227 -75.81 -57.11 REMARK 500 ILE B 228 -63.39 -18.83 REMARK 500 LYS B 264 31.47 -93.98 REMARK 500 ALA B 279 -85.33 -60.64 REMARK 500 ALA B 288 -121.69 -124.34 REMARK 500 PHE B 301 119.64 -171.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-11277B RELATED DB: TARGETDB DBREF 3K85 A 3 348 UNP Q8AAJ0 Q8AAJ0_BACTN 3 348 DBREF 3K85 B 3 348 UNP Q8AAJ0 Q8AAJ0_BACTN 3 348 SEQADV 3K85 MSE A 0 UNP Q8AAJ0 EXPRESSION TAG SEQADV 3K85 SER A 1 UNP Q8AAJ0 EXPRESSION TAG SEQADV 3K85 LEU A 2 UNP Q8AAJ0 EXPRESSION TAG SEQADV 3K85 GLU A 349 UNP Q8AAJ0 EXPRESSION TAG SEQADV 3K85 GLY A 350 UNP Q8AAJ0 EXPRESSION TAG SEQADV 3K85 HIS A 351 UNP Q8AAJ0 EXPRESSION TAG SEQADV 3K85 HIS A 352 UNP Q8AAJ0 EXPRESSION TAG SEQADV 3K85 HIS A 353 UNP Q8AAJ0 EXPRESSION TAG SEQADV 3K85 HIS A 354 UNP Q8AAJ0 EXPRESSION TAG SEQADV 3K85 HIS A 355 UNP Q8AAJ0 EXPRESSION TAG SEQADV 3K85 HIS A 356 UNP Q8AAJ0 EXPRESSION TAG SEQADV 3K85 MSE B 0 UNP Q8AAJ0 EXPRESSION TAG SEQADV 3K85 SER B 1 UNP Q8AAJ0 EXPRESSION TAG SEQADV 3K85 LEU B 2 UNP Q8AAJ0 EXPRESSION TAG SEQADV 3K85 GLU B 349 UNP Q8AAJ0 EXPRESSION TAG SEQADV 3K85 GLY B 350 UNP Q8AAJ0 EXPRESSION TAG SEQADV 3K85 HIS B 351 UNP Q8AAJ0 EXPRESSION TAG SEQADV 3K85 HIS B 352 UNP Q8AAJ0 EXPRESSION TAG SEQADV 3K85 HIS B 353 UNP Q8AAJ0 EXPRESSION TAG SEQADV 3K85 HIS B 354 UNP Q8AAJ0 EXPRESSION TAG SEQADV 3K85 HIS B 355 UNP Q8AAJ0 EXPRESSION TAG SEQADV 3K85 HIS B 356 UNP Q8AAJ0 EXPRESSION TAG SEQRES 1 A 357 MSE SER LEU VAL ARG SER LYS ALA PRO LEU ARG LEU GLY SEQRES 2 A 357 LEU ALA GLY GLY GLY SER ASP VAL SER PRO TYR SER ASP SEQRES 3 A 357 ILE TYR GLY GLY LEU ILE LEU ASN ALA THR ILE ASN LEU SEQRES 4 A 357 TYR ALA TYR CYS THR ILE GLU GLU THR ASN SER GLY ARG SEQRES 5 A 357 ILE GLU ILE ASN ALA TYR ASP ALA GLN CYS CYS LYS SER SEQRES 6 A 357 TYR LEU SER MSE SER GLN LEU GLU ILE ASP GLY GLU ALA SEQRES 7 A 357 SER LEU ILE LYS GLY VAL TYR ASN ARG ILE ILE ARG ASP SEQRES 8 A 357 TYR ARG LEU GLU PRO LYS SER PHE LYS ILE THR THR TYR SEQRES 9 A 357 ASN ASP ALA PRO ALA GLY SER GLY LEU GLY THR SER SER SEQRES 10 A 357 THR MSE VAL VAL CYS ILE LEU LYS ALA PHE ILE GLU TRP SEQRES 11 A 357 LEU SER LEU PRO LEU GLY ASP TYR GLU THR SER ARG LEU SEQRES 12 A 357 ALA TYR GLU ILE GLU ARG LYS ASP LEU GLY LEU SER GLY SEQRES 13 A 357 GLY LYS GLN ASP GLN TYR ALA ALA ALA PHE GLY GLY PHE SEQRES 14 A 357 ASN TYR MSE GLU PHE LEU GLN ASN ASP LEU VAL ILE VAL SEQRES 15 A 357 ASN PRO LEU LYS MSE LYS ARG TRP ILE VAL ASP GLU LEU SEQRES 16 A 357 GLU SER SER MSE VAL LEU TYR PHE THR GLY ARG SER ARG SEQRES 17 A 357 SER SER ALA ALA ILE ILE ASN GLU GLN LYS LYS ASN THR SEQRES 18 A 357 SER GLU GLY ASN GLN THR ALA ILE GLU ALA MSE HIS LYS SEQRES 19 A 357 ILE LYS GLN SER ALA ILE ASP THR LYS LEU ALA LEU LEU SEQRES 20 A 357 LYS GLY ASP VAL GLY GLU PHE ALA ARG ILE LEU GLY GLU SEQRES 21 A 357 GLY TRP GLU ASN LYS LYS LYS MSE ALA GLY ALA ILE THR SEQRES 22 A 357 ASN PRO MSE ILE GLN GLU ALA PHE ASP VAL ALA THR GLY SEQRES 23 A 357 ALA GLY ALA MSE ALA GLY LYS VAL SER GLY ALA GLY GLY SEQRES 24 A 357 GLY GLY PHE ILE MSE PHE VAL VAL GLU PRO THR ARG LYS SEQRES 25 A 357 GLU GLU VAL VAL ARG ALA LEU ASN ASN LEU ASN GLY PHE SEQRES 26 A 357 VAL MSE PRO PHE GLN PHE ILE ASP ASP GLY ALA HIS GLY SEQRES 27 A 357 TRP LYS ILE TYR SER THR ASP LYS VAL GLN LYS GLU GLY SEQRES 28 A 357 HIS HIS HIS HIS HIS HIS SEQRES 1 B 357 MSE SER LEU VAL ARG SER LYS ALA PRO LEU ARG LEU GLY SEQRES 2 B 357 LEU ALA GLY GLY GLY SER ASP VAL SER PRO TYR SER ASP SEQRES 3 B 357 ILE TYR GLY GLY LEU ILE LEU ASN ALA THR ILE ASN LEU SEQRES 4 B 357 TYR ALA TYR CYS THR ILE GLU GLU THR ASN SER GLY ARG SEQRES 5 B 357 ILE GLU ILE ASN ALA TYR ASP ALA GLN CYS CYS LYS SER SEQRES 6 B 357 TYR LEU SER MSE SER GLN LEU GLU ILE ASP GLY GLU ALA SEQRES 7 B 357 SER LEU ILE LYS GLY VAL TYR ASN ARG ILE ILE ARG ASP SEQRES 8 B 357 TYR ARG LEU GLU PRO LYS SER PHE LYS ILE THR THR TYR SEQRES 9 B 357 ASN ASP ALA PRO ALA GLY SER GLY LEU GLY THR SER SER SEQRES 10 B 357 THR MSE VAL VAL CYS ILE LEU LYS ALA PHE ILE GLU TRP SEQRES 11 B 357 LEU SER LEU PRO LEU GLY ASP TYR GLU THR SER ARG LEU SEQRES 12 B 357 ALA TYR GLU ILE GLU ARG LYS ASP LEU GLY LEU SER GLY SEQRES 13 B 357 GLY LYS GLN ASP GLN TYR ALA ALA ALA PHE GLY GLY PHE SEQRES 14 B 357 ASN TYR MSE GLU PHE LEU GLN ASN ASP LEU VAL ILE VAL SEQRES 15 B 357 ASN PRO LEU LYS MSE LYS ARG TRP ILE VAL ASP GLU LEU SEQRES 16 B 357 GLU SER SER MSE VAL LEU TYR PHE THR GLY ARG SER ARG SEQRES 17 B 357 SER SER ALA ALA ILE ILE ASN GLU GLN LYS LYS ASN THR SEQRES 18 B 357 SER GLU GLY ASN GLN THR ALA ILE GLU ALA MSE HIS LYS SEQRES 19 B 357 ILE LYS GLN SER ALA ILE ASP THR LYS LEU ALA LEU LEU SEQRES 20 B 357 LYS GLY ASP VAL GLY GLU PHE ALA ARG ILE LEU GLY GLU SEQRES 21 B 357 GLY TRP GLU ASN LYS LYS LYS MSE ALA GLY ALA ILE THR SEQRES 22 B 357 ASN PRO MSE ILE GLN GLU ALA PHE ASP VAL ALA THR GLY SEQRES 23 B 357 ALA GLY ALA MSE ALA GLY LYS VAL SER GLY ALA GLY GLY SEQRES 24 B 357 GLY GLY PHE ILE MSE PHE VAL VAL GLU PRO THR ARG LYS SEQRES 25 B 357 GLU GLU VAL VAL ARG ALA LEU ASN ASN LEU ASN GLY PHE SEQRES 26 B 357 VAL MSE PRO PHE GLN PHE ILE ASP ASP GLY ALA HIS GLY SEQRES 27 B 357 TRP LYS ILE TYR SER THR ASP LYS VAL GLN LYS GLU GLY SEQRES 28 B 357 HIS HIS HIS HIS HIS HIS MODRES 3K85 MSE A 68 MET SELENOMETHIONINE MODRES 3K85 MSE A 118 MET SELENOMETHIONINE MODRES 3K85 MSE A 171 MET SELENOMETHIONINE MODRES 3K85 MSE A 186 MET SELENOMETHIONINE MODRES 3K85 MSE A 198 MET SELENOMETHIONINE MODRES 3K85 MSE A 231 MET SELENOMETHIONINE MODRES 3K85 MSE A 289 MET SELENOMETHIONINE MODRES 3K85 MSE A 303 MET SELENOMETHIONINE MODRES 3K85 MSE A 326 MET SELENOMETHIONINE MODRES 3K85 MSE B 68 MET SELENOMETHIONINE MODRES 3K85 MSE B 118 MET SELENOMETHIONINE MODRES 3K85 MSE B 171 MET SELENOMETHIONINE MODRES 3K85 MSE B 186 MET SELENOMETHIONINE MODRES 3K85 MSE B 198 MET SELENOMETHIONINE MODRES 3K85 MSE B 231 MET SELENOMETHIONINE MODRES 3K85 MSE B 289 MET SELENOMETHIONINE MODRES 3K85 MSE B 303 MET SELENOMETHIONINE MODRES 3K85 MSE B 326 MET SELENOMETHIONINE HET MSE A 68 8 HET MSE A 118 8 HET MSE A 171 8 HET MSE A 186 8 HET MSE A 198 8 HET MSE A 231 8 HET MSE A 289 8 HET MSE A 303 8 HET MSE A 326 8 HET MSE B 68 8 HET MSE B 118 8 HET MSE B 171 8 HET MSE B 186 8 HET MSE B 198 8 HET MSE B 231 8 HET MSE B 289 8 HET MSE B 303 8 HET MSE B 326 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 18(C5 H11 N O2 SE) FORMUL 3 HOH *137(H2 O) HELIX 1 1 PRO A 22 TYR A 27 1 6 HELIX 2 2 ALA A 77 TYR A 91 1 15 HELIX 3 3 GLY A 113 SER A 131 1 19 HELIX 4 4 GLY A 135 LYS A 149 1 15 HELIX 5 5 LYS A 157 GLY A 166 1 10 HELIX 6 6 LYS A 187 SER A 197 1 11 HELIX 7 7 ILE A 228 LEU A 246 1 19 HELIX 8 8 ASP A 249 LYS A 264 1 16 HELIX 9 9 GLU A 307 ASN A 320 1 14 HELIX 10 10 PRO B 22 GLY B 28 1 7 HELIX 11 11 ASP B 58 GLN B 60 5 3 HELIX 12 12 ALA B 77 ARG B 92 1 16 HELIX 13 13 GLY B 113 SER B 131 1 19 HELIX 14 14 GLY B 135 LYS B 149 1 15 HELIX 15 15 LYS B 157 GLY B 166 1 10 HELIX 16 16 LYS B 187 SER B 197 1 11 HELIX 17 17 THR B 226 LYS B 247 1 22 HELIX 18 18 ASP B 249 LYS B 264 1 16 HELIX 19 19 ASP B 281 ALA B 286 1 6 HELIX 20 20 GLU B 307 LEU B 321 1 15 SHEET 1 A 6 CYS A 61 LEU A 66 0 SHEET 2 A 6 ARG A 51 ALA A 56 -1 N ILE A 54 O LYS A 63 SHEET 3 A 6 PHE A 98 ASN A 104 1 O THR A 102 N ASN A 55 SHEET 4 A 6 GLY A 29 GLU A 46 -1 N TYR A 41 O TYR A 103 SHEET 5 A 6 PHE A 168 LEU A 174 -1 O PHE A 173 N GLY A 29 SHEET 6 A 6 LEU A 178 LEU A 184 -1 O ILE A 180 N GLU A 172 SHEET 1 B 6 CYS A 61 LEU A 66 0 SHEET 2 B 6 ARG A 51 ALA A 56 -1 N ILE A 54 O LYS A 63 SHEET 3 B 6 PHE A 98 ASN A 104 1 O THR A 102 N ASN A 55 SHEET 4 B 6 GLY A 29 GLU A 46 -1 N TYR A 41 O TYR A 103 SHEET 5 B 6 VAL A 3 ALA A 14 -1 N VAL A 3 O ILE A 44 SHEET 6 B 6 HIS A 336 LYS A 339 -1 O TRP A 338 N ARG A 4 SHEET 1 C 3 MSE A 198 TYR A 201 0 SHEET 2 C 3 ILE A 302 VAL A 305 -1 O ILE A 302 N TYR A 201 SHEET 3 C 3 ALA A 290 VAL A 293 -1 N LYS A 292 O MSE A 303 SHEET 1 D 6 CYS B 61 LEU B 66 0 SHEET 2 D 6 ARG B 51 ALA B 56 -1 N ILE B 54 O LYS B 63 SHEET 3 D 6 PHE B 98 ASN B 104 1 O ILE B 100 N GLU B 53 SHEET 4 D 6 GLY B 29 GLU B 46 -1 N GLU B 45 O LYS B 99 SHEET 5 D 6 PHE B 168 LEU B 174 -1 O MSE B 171 N ILE B 31 SHEET 6 D 6 LEU B 178 LEU B 184 -1 O ASN B 182 N TYR B 170 SHEET 1 E 6 CYS B 61 LEU B 66 0 SHEET 2 E 6 ARG B 51 ALA B 56 -1 N ILE B 54 O LYS B 63 SHEET 3 E 6 PHE B 98 ASN B 104 1 O ILE B 100 N GLU B 53 SHEET 4 E 6 GLY B 29 GLU B 46 -1 N GLU B 45 O LYS B 99 SHEET 5 E 6 VAL B 3 ALA B 14 -1 N VAL B 3 O ILE B 44 SHEET 6 E 6 HIS B 336 LYS B 339 -1 O TRP B 338 N ARG B 4 SHEET 1 F 4 ALA B 290 VAL B 293 0 SHEET 2 F 4 ILE B 302 VAL B 305 -1 O MSE B 303 N LYS B 292 SHEET 3 F 4 MSE B 198 PHE B 202 -1 N TYR B 201 O ILE B 302 SHEET 4 F 4 PHE B 324 MSE B 326 -1 O MSE B 326 N LEU B 200 LINK C MSE A 68 N SER A 69 1555 1555 1.33 LINK C MSE A 118 N VAL A 119 1555 1555 1.33 LINK C MSE A 171 N GLU A 172 1555 1555 1.33 LINK C MSE A 186 N LYS A 187 1555 1555 1.33 LINK C MSE A 198 N VAL A 199 1555 1555 1.33 LINK C MSE A 231 N HIS A 232 1555 1555 1.33 LINK C MSE A 289 N ALA A 290 1555 1555 1.33 LINK C MSE A 303 N PHE A 304 1555 1555 1.33 LINK C MSE A 326 N PRO A 327 1555 1555 1.34 LINK C MSE B 68 N SER B 69 1555 1555 1.33 LINK C MSE B 118 N VAL B 119 1555 1555 1.33 LINK C MSE B 171 N GLU B 172 1555 1555 1.33 LINK C MSE B 186 N LYS B 187 1555 1555 1.33 LINK C MSE B 198 N VAL B 199 1555 1555 1.33 LINK C MSE B 231 N HIS B 232 1555 1555 1.33 LINK C MSE B 289 N ALA B 290 1555 1555 1.33 LINK C MSE B 303 N PHE B 304 1555 1555 1.33 LINK C MSE B 326 N PRO B 327 1555 1555 1.34 CISPEP 1 SER A 21 PRO A 22 0 0.02 CISPEP 2 SER B 21 PRO B 22 0 0.24 CRYST1 71.889 149.469 141.088 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013910 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006690 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007088 0.00000