HEADER TRANSPORT PROTEIN/TRANSPORT PROTEIN 14-OCT-09 3K8P TITLE STRUCTURAL BASIS FOR VESICLE TETHERING BY THE DSL1 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DSL1; COMPND 3 CHAIN: C; COMPND 4 FRAGMENT: UNP RESIDUES 332-686; COMPND 5 SYNONYM: KLLA0C02695P; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PROTEIN TRANSPORT PROTEIN SEC39; COMPND 9 CHAIN: D; COMPND 10 SYNONYM: DEPENDENT ON SLY1-20 PROTEIN 3; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLUYVEROMYCES LACTIS; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 28985; SOURCE 5 GENE: KLLA0C02695G; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 10 ORGANISM_COMMON: BREWER'S YEAST,LAGER BEER YEAST,YEAST; SOURCE 11 ORGANISM_TAXID: 4932; SOURCE 12 GENE: SEC39, DSL3, YLR440C; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INTRACELLULAR TRAFFICKING, DSL1 COMPLEX, MULTISUBUNIT KEYWDS 2 TETHERING COMPLEX, SNARE PROTEINS, ENDOPLASMIC RETICULUM, KEYWDS 3 ER-GOLGI TRANSPORT, MEMBRANE, PROTEIN TRANSPORT, TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR Y.REN,P.D.JEFFREY,F.M.HUGHSON REVDAT 2 29-DEC-09 3K8P 1 JRNL REVDAT 1 10-NOV-09 3K8P 0 JRNL AUTH Y.REN,C.K.YIP,A.TRIPATHI,D.HUIE,P.D.JEFFREY,T.WALZ, JRNL AUTH 2 F.M.HUGHSON JRNL TITL A STRUCTURE-BASED MECHANISM FOR VESICLE CAPTURE BY JRNL TITL 2 THE MULTISUBUNIT TETHERING COMPLEX DSL1. JRNL REF CELL(CAMBRIDGE,MASS.) V. 139 1119 2009 JRNL REFN ISSN 0092-8674 JRNL PMID 20005805 JRNL DOI 10.1016/J.CELL.2009.11.002 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.5_2) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.030 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 3 NUMBER OF REFLECTIONS : 78583 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 3943 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.1988 - 7.8604 0.93 2603 154 0.1918 0.2151 REMARK 3 2 7.8604 - 6.2556 0.94 2661 140 0.1982 0.2320 REMARK 3 3 6.2556 - 5.4696 0.96 2679 148 0.1920 0.2753 REMARK 3 4 5.4696 - 4.9717 0.98 2766 144 0.1652 0.2124 REMARK 3 5 4.9717 - 4.6166 0.99 2800 133 0.1460 0.2095 REMARK 3 6 4.6166 - 4.3452 0.99 2769 149 0.1540 0.2211 REMARK 3 7 4.3452 - 4.1281 0.98 2782 131 0.1596 0.2354 REMARK 3 8 4.1281 - 3.9487 0.99 2795 143 0.1752 0.2225 REMARK 3 9 3.9487 - 3.7970 0.98 2772 143 0.1812 0.2339 REMARK 3 10 3.7970 - 3.6662 0.99 2810 149 0.1842 0.2631 REMARK 3 11 3.6662 - 3.5517 0.98 2754 161 0.1885 0.2566 REMARK 3 12 3.5517 - 3.4503 0.98 2802 114 0.1854 0.2316 REMARK 3 13 3.4503 - 3.3596 0.98 2727 153 0.2085 0.3047 REMARK 3 14 3.3596 - 3.2777 0.97 2712 169 0.2204 0.3229 REMARK 3 15 3.2777 - 3.2033 0.97 2714 157 0.2304 0.3151 REMARK 3 16 3.2033 - 3.1352 0.95 2660 119 0.2244 0.2750 REMARK 3 17 3.1352 - 3.0725 0.95 2733 155 0.2248 0.3418 REMARK 3 18 3.0725 - 3.0146 0.94 2636 134 0.2321 0.2904 REMARK 3 19 3.0146 - 2.9608 0.94 2652 168 0.2483 0.3518 REMARK 3 20 2.9608 - 2.9106 0.93 2638 122 0.2602 0.3767 REMARK 3 21 2.9106 - 2.8637 0.92 2619 127 0.2610 0.3836 REMARK 3 22 2.8637 - 2.8197 0.92 2560 138 0.2548 0.3256 REMARK 3 23 2.8197 - 2.7782 0.92 2588 169 0.2515 0.2764 REMARK 3 24 2.7782 - 2.7391 0.90 2511 130 0.2544 0.2985 REMARK 3 25 2.7391 - 2.7021 0.89 2500 127 0.2523 0.3384 REMARK 3 26 2.7021 - 2.6671 0.89 2479 125 0.2732 0.3639 REMARK 3 27 2.6671 - 2.6337 0.88 2525 114 0.2617 0.3715 REMARK 3 28 2.6337 - 2.6000 0.85 2393 127 0.2408 0.2883 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 40.90 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 7521 REMARK 3 ANGLE : 1.141 10160 REMARK 3 CHIRALITY : 0.079 1156 REMARK 3 PLANARITY : 0.004 1272 REMARK 3 DIHEDRAL : 19.235 2792 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN D AND RESID 512:684 REMARK 3 ORIGIN FOR THE GROUP (A): 15.2196 21.8237 116.9740 REMARK 3 T TENSOR REMARK 3 T11: 0.5963 T22: 0.1866 REMARK 3 T33: 0.3012 T12: 0.0145 REMARK 3 T13: 0.1540 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 1.2929 L22: 0.6986 REMARK 3 L33: 1.4345 L12: 0.1467 REMARK 3 L13: -0.6098 L23: -0.0487 REMARK 3 S TENSOR REMARK 3 S11: -0.1183 S12: 0.3350 S13: -0.2964 REMARK 3 S21: -0.4820 S22: -0.2195 S23: -0.2043 REMARK 3 S31: 0.7054 S32: 0.0156 S33: 0.2515 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3K8P COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-OCT-09. REMARK 100 THE RCSB ID CODE IS RCSB055686. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793, 0.9795, 0.9641 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 82563 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06000 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.42100 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, PH 7.5, 10% PEG REMARK 280 MONOMETHYL ETHER 5000, 0.1 M MGCL2, 5% DIMETHYL SULFOXIDE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.01000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 106.94000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.41000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 106.94000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.01000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.41000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY C 330 REMARK 465 SER C 331 REMARK 465 GLU C 332 REMARK 465 PHE C 367 REMARK 465 LYS C 368 REMARK 465 THR C 369 REMARK 465 ASP C 370 REMARK 465 GLY C 371 REMARK 465 GLY C 372 REMARK 465 LYS C 373 REMARK 465 TYR C 374 REMARK 465 GLU C 375 REMARK 465 LYS C 376 REMARK 465 GLY C 377 REMARK 465 GLU C 378 REMARK 465 LYS C 379 REMARK 465 GLN C 380 REMARK 465 ASP C 381 REMARK 465 LEU C 382 REMARK 465 GLU C 383 REMARK 465 LEU C 384 REMARK 465 SER C 385 REMARK 465 GLU C 386 REMARK 465 LYS C 387 REMARK 465 LYS C 388 REMARK 465 THR C 389 REMARK 465 GLU C 390 REMARK 465 ASN C 391 REMARK 465 GLY C 392 REMARK 465 LYS C 393 REMARK 465 ASP C 394 REMARK 465 THR C 395 REMARK 465 GLU C 396 REMARK 465 SER C 397 REMARK 465 TRP C 398 REMARK 465 GLY C 399 REMARK 465 TRP C 400 REMARK 465 ASN C 401 REMARK 465 GLU C 402 REMARK 465 ASN C 403 REMARK 465 GLN C 404 REMARK 465 ASP C 405 REMARK 465 SER C 406 REMARK 465 ASP C 407 REMARK 465 GLU C 408 REMARK 465 HIS C 409 REMARK 465 ASP C 410 REMARK 465 GLY C 411 REMARK 465 TRP C 412 REMARK 465 ASP C 413 REMARK 465 GLU C 414 REMARK 465 GLU C 415 REMARK 465 LEU C 416 REMARK 465 ASP C 417 REMARK 465 ILE C 418 REMARK 465 ASP C 419 REMARK 465 VAL C 420 REMARK 465 ASP C 421 REMARK 465 ASN C 422 REMARK 465 VAL C 423 REMARK 465 THR C 685 REMARK 465 ASP C 686 REMARK 465 MSE D 1 REMARK 465 LEU D 2 REMARK 465 GLU D 3 REMARK 465 GLU D 4 REMARK 465 GLN D 5 REMARK 465 LEU D 6 REMARK 465 TYR D 7 REMARK 465 LEU D 8 REMARK 465 LEU D 9 REMARK 465 ALA D 10 REMARK 465 CYS D 11 REMARK 465 ILE D 12 REMARK 465 PHE D 13 REMARK 465 ALA D 14 REMARK 465 SER D 15 REMARK 465 ARG D 16 REMARK 465 ALA D 17 REMARK 465 ASP D 18 REMARK 465 THR D 19 REMARK 465 ARG D 20 REMARK 465 ASN D 21 REMARK 465 ILE D 22 REMARK 465 LYS D 23 REMARK 465 LYS D 24 REMARK 465 LEU D 25 REMARK 465 SER D 26 REMARK 465 THR D 27 REMARK 465 ARG D 28 REMARK 465 LEU D 29 REMARK 465 GLN D 63 REMARK 465 SER D 64 REMARK 465 PRO D 65 REMARK 465 GLU D 66 REMARK 465 GLY D 67 REMARK 465 GLU D 68 REMARK 465 GLU D 69 REMARK 465 THR D 70 REMARK 465 THR D 71 REMARK 465 ASP D 72 REMARK 465 GLU D 73 REMARK 465 ASP D 74 REMARK 465 VAL D 75 REMARK 465 ILE D 76 REMARK 465 VAL D 77 REMARK 465 GLU D 78 REMARK 465 LEU D 79 REMARK 465 LEU D 80 REMARK 465 GLU D 81 REMARK 465 SER D 82 REMARK 465 ASP D 83 REMARK 465 SER D 84 REMARK 465 SER D 85 REMARK 465 LEU D 86 REMARK 465 ILE D 87 REMARK 465 PRO D 88 REMARK 465 LEU D 89 REMARK 465 ILE D 90 REMARK 465 GLU D 91 REMARK 465 SER D 92 REMARK 465 ASP D 93 REMARK 465 THR D 94 REMARK 465 THR D 95 REMARK 465 THR D 96 REMARK 465 ARG D 97 REMARK 465 SER D 98 REMARK 465 ASN D 99 REMARK 465 ARG D 100 REMARK 465 GLY D 200 REMARK 465 VAL D 201 REMARK 465 GLU D 202 REMARK 465 ASP D 203 REMARK 465 MSE D 204 REMARK 465 GLN D 205 REMARK 465 GLY D 206 REMARK 465 TYR D 207 REMARK 465 ILE D 208 REMARK 465 GLY D 209 REMARK 465 ILE D 210 REMARK 465 ASP D 265 REMARK 465 ASN D 266 REMARK 465 SER D 267 REMARK 465 LYS D 503 REMARK 465 SER D 504 REMARK 465 HIS D 505 REMARK 465 ASN D 506 REMARK 465 GLY D 507 REMARK 465 ALA D 508 REMARK 465 ARG D 509 REMARK 465 ASP D 510 REMARK 465 THR D 511 REMARK 465 LEU D 685 REMARK 465 ASP D 686 REMARK 465 GLY D 687 REMARK 465 GLN D 688 REMARK 465 ASN D 689 REMARK 465 ASP D 690 REMARK 465 ASN D 691 REMARK 465 LYS D 692 REMARK 465 SER D 693 REMARK 465 LYS D 694 REMARK 465 VAL D 695 REMARK 465 GLY D 696 REMARK 465 GLY D 697 REMARK 465 ILE D 698 REMARK 465 ALA D 699 REMARK 465 ARG D 700 REMARK 465 GLU D 701 REMARK 465 ILE D 702 REMARK 465 PHE D 703 REMARK 465 HIS D 704 REMARK 465 ASN D 705 REMARK 465 VAL D 706 REMARK 465 THR D 707 REMARK 465 ASN D 708 REMARK 465 PHE D 709 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR C 644 OE2 GLU C 676 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR C 447 22.25 -75.38 REMARK 500 ILE C 448 15.74 -169.84 REMARK 500 ARG C 450 -178.59 128.16 REMARK 500 SER C 451 -56.74 60.54 REMARK 500 THR C 535 67.06 -151.46 REMARK 500 THR C 552 -67.55 -123.52 REMARK 500 LEU C 577 -80.66 -106.20 REMARK 500 SER D 31 123.22 69.26 REMARK 500 LEU D 58 -0.87 -58.51 REMARK 500 GLU D 61 127.08 174.72 REMARK 500 THR D 148 40.59 -102.39 REMARK 500 SER D 151 103.99 -39.00 REMARK 500 VAL D 165 -71.87 -124.18 REMARK 500 ILE D 179 55.74 -140.77 REMARK 500 PHE D 241 72.78 -117.84 REMARK 500 GLU D 315 -125.77 41.62 REMARK 500 GLU D 316 -86.81 -59.13 REMARK 500 GLN D 317 36.68 -151.61 REMARK 500 THR D 383 -89.79 -126.65 REMARK 500 ILE D 393 -65.27 -103.75 REMARK 500 MSE D 473 19.52 -145.74 REMARK 500 CYS D 524 59.04 -144.48 REMARK 500 ASP D 542 59.95 -113.67 REMARK 500 ASP D 585 76.32 -118.78 REMARK 500 ASN D 633 19.27 56.60 REMARK 500 LYS D 680 71.38 -117.35 REMARK 500 LYS D 682 1.04 -69.74 REMARK 500 REMARK 500 REMARK: NULL DBREF 3K8P C 332 686 UNP Q6CUS2 Q6CUS2_KLULA 332 686 DBREF 3K8P D 1 709 UNP Q12745 SEC39_YEAST 1 709 SEQADV 3K8P GLY C 330 UNP Q6CUS2 EXPRESSION TAG SEQADV 3K8P SER C 331 UNP Q6CUS2 EXPRESSION TAG SEQRES 1 C 357 GLY SER GLU ASN ILE TYR THR THR LEU LYS PHE GLU SER SEQRES 2 C 357 MSE MSE GLN GLN ARG VAL ILE GLN ILE ARG SER ILE PRO SEQRES 3 C 357 GLU GLU GLU TYR HIS GLU LEU VAL SER VAL GLN PHE LYS SEQRES 4 C 357 THR ASP GLY GLY LYS TYR GLU LYS GLY GLU LYS GLN ASP SEQRES 5 C 357 LEU GLU LEU SER GLU LYS LYS THR GLU ASN GLY LYS ASP SEQRES 6 C 357 THR GLU SER TRP GLY TRP ASN GLU ASN GLN ASP SER ASP SEQRES 7 C 357 GLU HIS ASP GLY TRP ASP GLU GLU LEU ASP ILE ASP VAL SEQRES 8 C 357 ASP ASN VAL PRO ILE GLN VAL SER VAL PHE VAL GLN SER SEQRES 9 C 357 ALA ALA LYS VAL PHE THR GLU PHE GLU GLN GLY CYS ASP SEQRES 10 C 357 THR ILE GLY ARG SER LYS VAL GLU SER ILE TYR LEU TYR SEQRES 11 C 357 LYS PHE ASN LEU LEU GLN THR ALA PHE PHE ALA MSE VAL SEQRES 12 C 357 SER GLU LYS VAL ASN ASP TRP THR GLN LEU TYR LYS ASP SEQRES 13 C 357 VAL ARG TYR LEU TYR THR GLU ASN PRO LYS LEU LEU GLN SEQRES 14 C 357 LEU MSE GLU LEU ASN SER ARG ARG LEU ASP LEU ASN LEU SEQRES 15 C 357 ASN LEU ILE LYS LYS THR ILE TYR LYS LEU VAL ASN ASP SEQRES 16 C 357 GLN LEU GLN GLU LEU LYS ASP ASN GLU ARG THR PRO ASP SEQRES 17 C 357 TRP ASP ILE THR ILE SER SER LEU LEU PRO TYR LEU LYS SEQRES 18 C 357 LYS THR ALA LEU PRO THR LEU TYR LYS LEU GLU ASP ASN SEQRES 19 C 357 THR ILE LEU VAL ALA LEU ILE ARG TYR ILE VAL HIS ASP SEQRES 20 C 357 LEU VAL ILE ASP ASN ILE LEU HIS TRP ARG VAL ILE SER SEQRES 21 C 357 GLU LYS SER SER GLU ASN LEU SER GLU PHE ILE MSE LEU SEQRES 22 C 357 LEU LEU SER GLY LEU GLU ILE PRO ARG LEU ASN LEU ILE SEQRES 23 C 357 GLU THR TYR ARG HIS SER ARG GLU LYS LEU GLY ILE LEU SEQRES 24 C 357 SER LYS ILE LEU THR ALA HIS LEU LYS ASP ILE LEU GLU SEQRES 25 C 357 MSE PHE TYR GLU GLY GLU PHE PHE LEU PHE GLU THR ASP SEQRES 26 C 357 GLU ILE VAL GLN TRP ILE ILE LEU LEU PHE ALA ASP THR SEQRES 27 C 357 PRO THR ARG ARG ASP CYS ILE ASP GLU ILE ARG ARG VAL SEQRES 28 C 357 ARG GLU GLU ALA THR ASP SEQRES 1 D 709 MSE LEU GLU GLU GLN LEU TYR LEU LEU ALA CYS ILE PHE SEQRES 2 D 709 ALA SER ARG ALA ASP THR ARG ASN ILE LYS LYS LEU SER SEQRES 3 D 709 THR ARG LEU GLY SER GLN SER LYS TYR LEU GLU ILE LEU SEQRES 4 D 709 CYS VAL LEU TRP PRO GLU LEU ASP ASP PRO LYS ASN LEU SEQRES 5 D 709 LEU PHE LEU ARG GLU LEU GLU GLU GLU VAL GLN SER PRO SEQRES 6 D 709 GLU GLY GLU GLU THR THR ASP GLU ASP VAL ILE VAL GLU SEQRES 7 D 709 LEU LEU GLU SER ASP SER SER LEU ILE PRO LEU ILE GLU SEQRES 8 D 709 SER ASP THR THR THR ARG SER ASN ARG TYR HIS GLU LEU SEQRES 9 D 709 GLN GLU PHE ILE SER LYS LYS LEU ASN ASN LYS THR LEU SEQRES 10 D 709 GLU ASN PHE GLU GLU TRP LEU ARG GLU ARG ILE LEU ILE SEQRES 11 D 709 CYS ASN GLU MSE ILE PRO GLU THR PRO LEU LEU TYR SER SEQRES 12 D 709 VAL LEU TRP GLU THR ALA LYS SER LYS VAL LEU SER THR SEQRES 13 D 709 LYS PHE ILE GLY TRP VAL GLU GLY VAL LEU LYS PRO LEU SEQRES 14 D 709 ASP HIS LEU ASN LYS ARG LEU HIS LEU ILE PHE LYS ILE SEQRES 15 D 709 ASN GLU TRP GLU LYS MSE PRO ASP SER GLU LEU PHE LYS SEQRES 16 D 709 ILE ILE PHE ASP GLY VAL GLU ASP MSE GLN GLY TYR ILE SEQRES 17 D 709 GLY ILE ALA ASP VAL ILE GLU ASP GLU LEU ALA PRO THR SEQRES 18 D 709 LEU SER TYR GLY LYS LYS TRP GLU THR PHE ILE THR GLU SEQRES 19 D 709 PHE PHE ASN LYS GLN GLN PHE SER LEU LYS SER ASP THR SEQRES 20 D 709 ASN TYR GLN LEU PHE ILE LYS LEU TYR TYR SER LEU GLU SEQRES 21 D 709 LYS GLY VAL LYS ASP ASN SER GLU ALA SER ARG LYS LEU SEQRES 22 D 709 GLN SER ASN VAL VAL ASP ILE LEU PHE HIS ASN SER GLU SEQRES 23 D 709 ASN LEU PHE ASN LEU SER SER LEU THR HIS LYS LEU ASP SEQRES 24 D 709 GLU LEU TRP SER ILE LEU SER GLY PHE PRO ASP GLU ILE SEQRES 25 D 709 THR ILE GLU GLU GLN LYS THR ILE THR ALA LEU GLU MSE SEQRES 26 D 709 LYS GLN PHE MSE GLU PHE PHE ILE LYS CYS SER THR LYS SEQRES 27 D 709 PHE SER PHE LYS GLU ILE PHE ALA ILE THR GLN GLU GLU SEQRES 28 D 709 GLU SER ALA GLN LEU ALA HIS PHE SER SER LEU CYS HIS SEQRES 29 D 709 GLU GLU PHE ASN LYS ALA ASN GLU ILE SER SER PHE LEU SEQRES 30 D 709 GLN ALA MSE TYR GLU THR VAL LEU ASP ILE SER LYS ASP SEQRES 31 D 709 ASP LYS ILE PHE THR ARG ILE SER MSE ASP GLU LYS LEU SEQRES 32 D 709 TYR SER ILE LEU GLU ILE LEU LEU GLN MSE ASN GLU PHE SEQRES 33 D 709 ALA TYR ILE GLU ALA ILE ILE GLU ARG PHE ASP TYR SER SEQRES 34 D 709 ASN ASN THR GLN ILE TYR GLU LEU LEU VAL LYS PHE PHE SEQRES 35 D 709 TRP HIS PHE PHE ASN ASN ALA SER ASN GLY LEU ARG LYS SEQRES 36 D 709 GLU PRO GLU MSE LYS LYS ALA SER GLN THR LEU GLN ILE SEQRES 37 D 709 ILE GLN LYS HIS MSE SER GLN ARG ALA GLY THR ASN LEU SEQRES 38 D 709 THR LYS LEU GLU VAL LEU LEU GLU ILE SER ASP LYS LEU SEQRES 39 D 709 SER HIS TYR SER ILE ASN LEU ASN LYS SER HIS ASN GLY SEQRES 40 D 709 ALA ARG ASP THR ALA PHE LYS PRO SER ASN ILE LEU GLU SEQRES 41 D 709 TYR ARG ASP CYS PRO LEU ASP ILE ILE SER ASN LEU LEU SEQRES 42 D 709 GLU LEU ASN PRO ARG LEU TYR LYS ASP LEU PRO THR THR SEQRES 43 D 709 LYS SER LEU LEU PHE GLY ILE TYR ASP SER LEU SER ILE SEQRES 44 D 709 ASN ARG GLU GLY GLN THR GLY LYS VAL GLU VAL ASP LEU SEQRES 45 D 709 MSE VAL LEU HIS ILE ASP TYR ALA LEU VAL ASN LEU ASP SEQRES 46 D 709 PHE GLY THR ALA TYR GLU LEU GLY LYS GLN VAL PHE GLU SEQRES 47 D 709 ILE CYS GLN GLU ALA GLY GLN HIS MSE MSE LYS ALA LEU SEQRES 48 D 709 GLY ASP GLU HIS TRP LEU THR PHE TYR GLN MSE GLY LYS SEQRES 49 D 709 PHE VAL ASP PRO ASN TRP VAL ASP ASN GLU ILE PRO THR SEQRES 50 D 709 GLU ILE ILE VAL LEU GLN MSE SER ILE LEU GLY ARG LEU SEQRES 51 D 709 LEU GLU VAL CYS PRO LEU GLU GLU VAL GLU ILE VAL THR SEQRES 52 D 709 SER GLN TRP SER THR LEU GLU LEU GLU LEU SER ALA ARG SEQRES 53 D 709 ASP LEU VAL LYS ASP LYS TYR ALA LEU ASP GLY GLN ASN SEQRES 54 D 709 ASP ASN LYS SER LYS VAL GLY GLY ILE ALA ARG GLU ILE SEQRES 55 D 709 PHE HIS ASN VAL THR ASN PHE MODRES 3K8P MSE C 343 MET SELENOMETHIONINE MODRES 3K8P MSE C 344 MET SELENOMETHIONINE MODRES 3K8P MSE C 471 MET SELENOMETHIONINE MODRES 3K8P MSE C 500 MET SELENOMETHIONINE MODRES 3K8P MSE C 601 MET SELENOMETHIONINE MODRES 3K8P MSE C 642 MET SELENOMETHIONINE MODRES 3K8P MSE D 134 MET SELENOMETHIONINE MODRES 3K8P MSE D 188 MET SELENOMETHIONINE MODRES 3K8P MSE D 325 MET SELENOMETHIONINE MODRES 3K8P MSE D 329 MET SELENOMETHIONINE MODRES 3K8P MSE D 380 MET SELENOMETHIONINE MODRES 3K8P MSE D 399 MET SELENOMETHIONINE MODRES 3K8P MSE D 413 MET SELENOMETHIONINE MODRES 3K8P MSE D 459 MET SELENOMETHIONINE MODRES 3K8P MSE D 473 MET SELENOMETHIONINE MODRES 3K8P MSE D 573 MET SELENOMETHIONINE MODRES 3K8P MSE D 607 MET SELENOMETHIONINE MODRES 3K8P MSE D 608 MET SELENOMETHIONINE MODRES 3K8P MSE D 622 MET SELENOMETHIONINE MODRES 3K8P MSE D 644 MET SELENOMETHIONINE HET MSE C 343 8 HET MSE C 344 8 HET MSE C 471 8 HET MSE C 500 8 HET MSE C 601 8 HET MSE C 642 8 HET MSE D 134 8 HET MSE D 188 8 HET MSE D 325 8 HET MSE D 329 8 HET MSE D 380 8 HET MSE D 399 8 HET MSE D 413 8 HET MSE D 459 8 HET MSE D 473 8 HET MSE D 573 8 HET MSE D 607 8 HET MSE D 608 8 HET MSE D 622 8 HET MSE D 644 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 20(C5 H11 N O2 SE) FORMUL 3 HOH *3(H2 O) HELIX 1 1 ILE C 334 SER C 353 1 20 HELIX 2 2 PRO C 355 TYR C 359 5 5 HELIX 3 3 VAL C 429 THR C 447 1 19 HELIX 4 4 VAL C 453 VAL C 476 1 24 HELIX 5 5 ASP C 478 ASN C 493 1 16 HELIX 6 6 LEU C 496 ASN C 532 1 37 HELIX 7 7 TRP C 538 SER C 544 1 7 HELIX 8 8 SER C 544 THR C 552 1 9 HELIX 9 9 THR C 552 LYS C 559 1 8 HELIX 10 10 ASP C 562 ASP C 576 1 15 HELIX 11 11 LEU C 577 HIS C 584 1 8 HELIX 12 12 SER C 589 LEU C 607 1 19 HELIX 13 13 GLU C 608 ASN C 613 5 6 HELIX 14 14 ILE C 615 THR C 633 1 19 HELIX 15 15 HIS C 635 GLU C 645 1 11 HELIX 16 16 GLY C 646 PHE C 651 5 6 HELIX 17 17 GLU C 652 PHE C 664 1 13 HELIX 18 18 THR C 667 ALA C 684 1 18 HELIX 19 19 GLN D 32 TRP D 43 1 12 HELIX 20 20 ASP D 48 LEU D 52 5 5 HELIX 21 21 LEU D 53 GLU D 61 1 9 HELIX 22 22 TYR D 101 GLU D 103 5 3 HELIX 23 23 LEU D 104 LEU D 112 1 9 HELIX 24 24 ASN D 119 GLU D 133 1 15 HELIX 25 25 TYR D 142 THR D 148 1 7 HELIX 26 26 SER D 155 VAL D 165 1 11 HELIX 27 27 VAL D 165 LEU D 176 1 12 HELIX 28 28 LYS D 181 MSE D 188 1 8 HELIX 29 29 PRO D 189 PHE D 198 1 10 HELIX 30 30 ALA D 211 GLU D 217 1 7 HELIX 31 31 GLU D 217 LYS D 226 1 10 HELIX 32 32 LYS D 227 PHE D 236 1 10 HELIX 33 33 SER D 245 GLY D 262 1 18 HELIX 34 34 ALA D 269 ASN D 290 1 22 HELIX 35 35 SER D 293 SER D 306 1 14 HELIX 36 36 ALA D 322 CYS D 335 1 14 HELIX 37 37 SER D 340 GLN D 349 1 10 HELIX 38 38 GLU D 351 ASN D 368 1 18 HELIX 39 39 GLU D 372 THR D 383 1 12 HELIX 40 40 SER D 398 MSE D 413 1 16 HELIX 41 41 GLU D 415 PHE D 426 1 12 HELIX 42 42 ASN D 431 ALA D 449 1 19 HELIX 43 43 GLU D 456 GLY D 478 1 23 HELIX 44 44 GLY D 478 SER D 495 1 18 HELIX 45 45 LYS D 514 TYR D 521 1 8 HELIX 46 46 PRO D 525 ASN D 536 1 12 HELIX 47 47 ARG D 538 LYS D 541 5 4 HELIX 48 48 ASP D 542 LEU D 557 1 16 HELIX 49 49 GLN D 564 ASN D 583 1 20 HELIX 50 50 ASP D 585 GLY D 604 1 20 HELIX 51 51 GLY D 604 PHE D 625 1 22 HELIX 52 52 TRP D 630 GLU D 634 5 5 HELIX 53 53 PRO D 636 CYS D 654 1 19 HELIX 54 54 PRO D 655 GLU D 657 5 3 HELIX 55 55 GLU D 658 SER D 674 1 17 SHEET 1 A 2 LEU C 362 VAL C 365 0 SHEET 2 A 2 ILE C 425 SER C 428 -1 O ILE C 425 N VAL C 365 SHEET 1 B 2 GLU D 311 ILE D 314 0 SHEET 2 B 2 LYS D 318 THR D 321 -1 O LYS D 318 N ILE D 314 LINK C SER C 342 N MSE C 343 1555 1555 1.33 LINK C MSE C 343 N MSE C 344 1555 1555 1.33 LINK C MSE C 344 N GLN C 345 1555 1555 1.32 LINK C ALA C 470 N MSE C 471 1555 1555 1.33 LINK C MSE C 471 N VAL C 472 1555 1555 1.32 LINK C LEU C 499 N MSE C 500 1555 1555 1.32 LINK C MSE C 500 N GLU C 501 1555 1555 1.32 LINK C ILE C 600 N MSE C 601 1555 1555 1.33 LINK C MSE C 601 N LEU C 602 1555 1555 1.33 LINK C GLU C 641 N MSE C 642 1555 1555 1.33 LINK C MSE C 642 N PHE C 643 1555 1555 1.33 LINK C GLU D 133 N MSE D 134 1555 1555 1.34 LINK C MSE D 134 N ILE D 135 1555 1555 1.33 LINK C LYS D 187 N MSE D 188 1555 1555 1.33 LINK C MSE D 188 N PRO D 189 1555 1555 1.34 LINK C GLU D 324 N MSE D 325 1555 1555 1.32 LINK C MSE D 325 N LYS D 326 1555 1555 1.33 LINK C PHE D 328 N MSE D 329 1555 1555 1.34 LINK C MSE D 329 N GLU D 330 1555 1555 1.33 LINK C ALA D 379 N MSE D 380 1555 1555 1.33 LINK C MSE D 380 N TYR D 381 1555 1555 1.33 LINK C SER D 398 N MSE D 399 1555 1555 1.33 LINK C MSE D 399 N ASP D 400 1555 1555 1.33 LINK C GLN D 412 N MSE D 413 1555 1555 1.32 LINK C MSE D 413 N ASN D 414 1555 1555 1.33 LINK C GLU D 458 N MSE D 459 1555 1555 1.32 LINK C MSE D 459 N LYS D 460 1555 1555 1.33 LINK C HIS D 472 N MSE D 473 1555 1555 1.33 LINK C MSE D 473 N SER D 474 1555 1555 1.33 LINK C LEU D 572 N MSE D 573 1555 1555 1.33 LINK C MSE D 573 N VAL D 574 1555 1555 1.33 LINK C HIS D 606 N MSE D 607 1555 1555 1.33 LINK C MSE D 607 N MSE D 608 1555 1555 1.34 LINK C MSE D 608 N LYS D 609 1555 1555 1.33 LINK C GLN D 621 N MSE D 622 1555 1555 1.32 LINK C MSE D 622 N GLY D 623 1555 1555 1.33 LINK C GLN D 643 N MSE D 644 1555 1555 1.33 LINK C MSE D 644 N SER D 645 1555 1555 1.33 CISPEP 1 GLY D 30 SER D 31 0 -1.06 CRYST1 72.020 90.820 213.880 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013885 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011011 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004676 0.00000