HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 14-OCT-09 3K8R TITLE CRYSTAL STRUCTURE OF PROTEIN OF UNKNOWN FUNCTION (YP_427503.1) FROM TITLE 2 RHODOSPIRILLUM RUBRUM ATCC 11170 AT 2.75 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOSPIRILLUM RUBRUM ATCC 11170; SOURCE 3 ORGANISM_TAXID: 269796; SOURCE 4 STRAIN: ATCC 11170 / NCIB 8255; SOURCE 5 GENE: RRU_A2416; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS UNKNOWN FUNCTION, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2 EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 3K8R 1 REMARK SEQADV REVDAT 4 17-JUL-19 3K8R 1 REMARK LINK REVDAT 3 25-OCT-17 3K8R 1 REMARK REVDAT 2 13-JUL-11 3K8R 1 VERSN REVDAT 1 27-OCT-09 3K8R 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PROTEIN OF UNKNOWN FUNCTION JRNL TITL 2 (YP_427503.1) FROM RHODOSPIRILLUM RUBRUM ATCC 11170 AT 2.75 JRNL TITL 3 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0053 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.86 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 7458 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 344 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.82 REMARK 3 REFLECTION IN BIN (WORKING SET) : 521 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.36 REMARK 3 BIN R VALUE (WORKING SET) : 0.3710 REMARK 3 BIN FREE R VALUE SET COUNT : 18 REMARK 3 BIN FREE R VALUE : 0.6100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1263 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 4 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 75.25 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.39000 REMARK 3 B22 (A**2) : -2.39000 REMARK 3 B33 (A**2) : 4.79000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.474 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.278 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.211 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 24.860 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1295 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 879 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1752 ; 1.492 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2124 ; 0.865 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 166 ; 3.411 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 57 ;27.994 ;23.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 198 ;11.715 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;10.759 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 190 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1471 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 272 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 828 ; 0.794 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 344 ; 0.206 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1303 ; 1.528 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 467 ; 2.709 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 449 ; 3.703 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 23 A 103 4 REMARK 3 1 B 23 B 103 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1027 ; 0.330 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1027 ; 0.440 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 23 A 107 REMARK 3 ORIGIN FOR THE GROUP (A): -23.8975 -42.1200 -26.0183 REMARK 3 T TENSOR REMARK 3 T11: 0.1403 T22: 0.0779 REMARK 3 T33: 0.2068 T12: -0.0335 REMARK 3 T13: -0.0249 T23: -0.0241 REMARK 3 L TENSOR REMARK 3 L11: 1.7923 L22: 6.2388 REMARK 3 L33: 2.7885 L12: -1.1450 REMARK 3 L13: -0.9982 L23: -1.5336 REMARK 3 S TENSOR REMARK 3 S11: 0.0352 S12: 0.0978 S13: -0.3408 REMARK 3 S21: -0.0546 S22: -0.0289 S23: -0.2434 REMARK 3 S31: 0.0340 S32: -0.0472 S33: -0.0063 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 22 B 104 REMARK 3 ORIGIN FOR THE GROUP (A): -41.5801 -31.6988 -16.9487 REMARK 3 T TENSOR REMARK 3 T11: 0.1181 T22: 0.1577 REMARK 3 T33: 0.1263 T12: -0.0861 REMARK 3 T13: -0.0293 T23: 0.0025 REMARK 3 L TENSOR REMARK 3 L11: 6.0896 L22: 4.5596 REMARK 3 L33: 4.6565 L12: -2.6957 REMARK 3 L13: -1.1185 L23: 2.6139 REMARK 3 S TENSOR REMARK 3 S11: 0.0194 S12: 0.2670 S13: -0.3153 REMARK 3 S21: 0.1559 S22: -0.2757 S23: 0.6669 REMARK 3 S31: 0.4493 S32: -0.4750 S33: 0.2563 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1.HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2.ATOM RECORDS CONTAIN RESIDUAL B FACTORS REMARK 3 ONLY. 3.A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE REMARK 3 ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED REMARK 3 SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4.1,2- REMARK 3 ETHANEDIOL (EDO) FROM THE CRYOPROTECTANT HAS BEEN MODELED IN THE REMARK 3 SOLVENT STRUCTURE. REMARK 4 REMARK 4 3K8R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000055688. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97932 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7459 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 28.855 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.61600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20.0000% PEG-6000, 0.1M TRIS PH 8.0, REMARK 280 NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 55.98500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.98500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 22.75700 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 55.98500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.98500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 22.75700 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 55.98500 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 55.98500 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 22.75700 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 55.98500 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 55.98500 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 22.75700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING ANALYSIS AND SIZE-EXCLUSION CHROMATOGRAPHY REMARK 300 COUPLED WITH STATIC LIGHT SCATTERING SUPPORT THE ASSIGNMENT OF A REMARK 300 DIMER AS THE SIGNIFICANT OLIGOMERIC FORM IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 LEU A 4 REMARK 465 THR A 5 REMARK 465 ASP A 6 REMARK 465 ALA A 7 REMARK 465 LEU A 8 REMARK 465 ILE A 9 REMARK 465 ASP A 10 REMARK 465 ALA A 11 REMARK 465 ALA A 12 REMARK 465 LEU A 13 REMARK 465 GLU A 14 REMARK 465 ARG A 15 REMARK 465 GLY A 16 REMARK 465 ARG A 17 REMARK 465 SER A 18 REMARK 465 ALA A 19 REMARK 465 HIS A 20 REMARK 465 ALA A 21 REMARK 465 ASN A 22 REMARK 465 GLU A 108 REMARK 465 PRO A 109 REMARK 465 PRO A 110 REMARK 465 PRO A 111 REMARK 465 SER A 112 REMARK 465 ALA A 113 REMARK 465 ALA A 114 REMARK 465 LYS A 115 REMARK 465 ASP A 116 REMARK 465 ALA A 117 REMARK 465 TRP A 118 REMARK 465 SER A 119 REMARK 465 ASN A 120 REMARK 465 LEU A 121 REMARK 465 PRO A 122 REMARK 465 ARG A 123 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 ALA B 2 REMARK 465 ASP B 3 REMARK 465 LEU B 4 REMARK 465 THR B 5 REMARK 465 ASP B 6 REMARK 465 ALA B 7 REMARK 465 LEU B 8 REMARK 465 ILE B 9 REMARK 465 ASP B 10 REMARK 465 ALA B 11 REMARK 465 ALA B 12 REMARK 465 LEU B 13 REMARK 465 GLU B 14 REMARK 465 ARG B 15 REMARK 465 GLY B 16 REMARK 465 ARG B 17 REMARK 465 SER B 18 REMARK 465 ALA B 19 REMARK 465 HIS B 20 REMARK 465 ALA B 21 REMARK 465 LYS B 105 REMARK 465 ARG B 106 REMARK 465 ALA B 107 REMARK 465 GLU B 108 REMARK 465 PRO B 109 REMARK 465 PRO B 110 REMARK 465 PRO B 111 REMARK 465 SER B 112 REMARK 465 ALA B 113 REMARK 465 ALA B 114 REMARK 465 LYS B 115 REMARK 465 ASP B 116 REMARK 465 ALA B 117 REMARK 465 TRP B 118 REMARK 465 SER B 119 REMARK 465 ASN B 120 REMARK 465 LEU B 121 REMARK 465 PRO B 122 REMARK 465 ARG B 123 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 74 CG CD OE1 NE2 REMARK 470 LYS A 105 CG CD CE NZ REMARK 470 LYS B 100 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS B 67 CB CYS B 67 SG -0.113 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 106 48.44 -147.29 REMARK 500 ARG B 53 41.17 -92.28 REMARK 500 MSE B 103 58.63 -95.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 124 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 125 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 391960 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3K8R A 1 123 UNP Q2RRM9 Q2RRM9_RHORT 1 123 DBREF 3K8R B 1 123 UNP Q2RRM9 Q2RRM9_RHORT 1 123 SEQADV 3K8R GLY A 0 UNP Q2RRM9 EXPRESSION TAG SEQADV 3K8R GLY B 0 UNP Q2RRM9 EXPRESSION TAG SEQRES 1 A 124 GLY MSE ALA ASP LEU THR ASP ALA LEU ILE ASP ALA ALA SEQRES 2 A 124 LEU GLU ARG GLY ARG SER ALA HIS ALA ASN GLU PRO ARG SEQRES 3 A 124 ALA ALA LYS ALA ARG TYR ASP ARG SER SER ALA ARG VAL SEQRES 4 A 124 ILE VAL ASP LEU GLU ASN GLY CYS THR PHE ALA PHE PRO SEQRES 5 A 124 PRO ARG LEU ALA GLN GLY LEU GLU GLY ALA SER ASP ASP SEQRES 6 A 124 GLN LEU CYS ALA VAL GLU ILE LEU GLY GLN GLY TYR GLY SEQRES 7 A 124 LEU HIS TRP GLU THR LEU ASP VAL ASP LEU SER LEU PRO SEQRES 8 A 124 GLY LEU MSE ALA GLY ILE PHE GLY THR LYS ALA TRP MSE SEQRES 9 A 124 ALA LYS ARG ALA GLU PRO PRO PRO SER ALA ALA LYS ASP SEQRES 10 A 124 ALA TRP SER ASN LEU PRO ARG SEQRES 1 B 124 GLY MSE ALA ASP LEU THR ASP ALA LEU ILE ASP ALA ALA SEQRES 2 B 124 LEU GLU ARG GLY ARG SER ALA HIS ALA ASN GLU PRO ARG SEQRES 3 B 124 ALA ALA LYS ALA ARG TYR ASP ARG SER SER ALA ARG VAL SEQRES 4 B 124 ILE VAL ASP LEU GLU ASN GLY CYS THR PHE ALA PHE PRO SEQRES 5 B 124 PRO ARG LEU ALA GLN GLY LEU GLU GLY ALA SER ASP ASP SEQRES 6 B 124 GLN LEU CYS ALA VAL GLU ILE LEU GLY GLN GLY TYR GLY SEQRES 7 B 124 LEU HIS TRP GLU THR LEU ASP VAL ASP LEU SER LEU PRO SEQRES 8 B 124 GLY LEU MSE ALA GLY ILE PHE GLY THR LYS ALA TRP MSE SEQRES 9 B 124 ALA LYS ARG ALA GLU PRO PRO PRO SER ALA ALA LYS ASP SEQRES 10 B 124 ALA TRP SER ASN LEU PRO ARG MODRES 3K8R MSE A 93 MET SELENOMETHIONINE MODRES 3K8R MSE A 103 MET SELENOMETHIONINE MODRES 3K8R MSE B 93 MET SELENOMETHIONINE MODRES 3K8R MSE B 103 MET SELENOMETHIONINE HET MSE A 93 8 HET MSE A 103 8 HET MSE B 93 8 HET MSE B 103 8 HET EDO A 124 4 HET EDO A 125 4 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 EDO 2(C2 H6 O2) FORMUL 5 HOH *4(H2 O) HELIX 1 1 PRO A 51 ALA A 55 5 5 HELIX 2 2 SER A 62 CYS A 67 1 6 HELIX 3 3 LEU A 89 ALA A 94 1 6 HELIX 4 4 THR A 99 LYS A 105 1 7 HELIX 5 5 PRO B 51 ALA B 55 5 5 HELIX 6 6 SER B 62 CYS B 67 1 6 HELIX 7 7 LEU B 89 GLY B 95 1 7 SHEET 1 A 6 ALA A 26 ASP A 32 0 SHEET 2 A 6 ARG A 37 LEU A 42 -1 O ARG A 37 N ASP A 32 SHEET 3 A 6 THR A 47 PHE A 50 -1 O PHE A 48 N VAL A 40 SHEET 4 A 6 THR B 47 PHE B 50 -1 O THR B 47 N ALA A 49 SHEET 5 A 6 ARG B 37 LEU B 42 -1 N VAL B 40 O PHE B 48 SHEET 6 A 6 ALA B 26 ASP B 32 -1 N ASP B 32 O ARG B 37 SHEET 1 B 3 GLU A 70 LEU A 72 0 SHEET 2 B 3 GLY A 77 TRP A 80 -1 O HIS A 79 N GLU A 70 SHEET 3 B 3 VAL A 85 SER A 88 -1 O LEU A 87 N LEU A 78 SHEET 1 C 3 GLU B 70 LEU B 72 0 SHEET 2 C 3 GLY B 77 TRP B 80 -1 O HIS B 79 N GLU B 70 SHEET 3 C 3 VAL B 85 SER B 88 -1 O LEU B 87 N LEU B 78 LINK C LEU A 92 N MSE A 93 1555 1555 1.33 LINK C MSE A 93 N ALA A 94 1555 1555 1.33 LINK C TRP A 102 N MSE A 103 1555 1555 1.33 LINK C MSE A 103 N ALA A 104 1555 1555 1.33 LINK C LEU B 92 N MSE B 93 1555 1555 1.34 LINK C MSE B 93 N ALA B 94 1555 1555 1.33 LINK C TRP B 102 N MSE B 103 1555 1555 1.32 LINK C MSE B 103 N ALA B 104 1555 1555 1.33 SITE 1 AC1 3 ARG A 30 ASP A 41 LYS B 28 SITE 1 AC2 3 LEU A 87 SER A 88 ILE A 96 CRYST1 111.970 111.970 45.514 90.00 90.00 90.00 I 4 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008931 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008931 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021971 0.00000