HEADER OXIDOREDUCTASE 16-OCT-09 3K9Y TITLE CRYSTAL STRUCTURE OF RAT MITOCHONDRIAL P450 24A1 S57D IN COMPLEX WITH TITLE 2 CYMAL-5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 1,25-DIHYDROXYVITAMIN D(3) 24-HYDROXYLASE, MITOCHONDRIAL; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 34-514; COMPND 5 SYNONYM: VITAMIN D(3) 24-HYDROXYLASE, 24-OHASE, CYTOCHROME P450 24A1, COMPND 6 P450-CC24; COMPND 7 EC: 1.14.13.-; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: CYP24, CYP24A1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: DH5ALPHA-FIQ; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PTRC99A KEYWDS MITOCHONDRIAL CYTOCHROME P450, MONOTOPIC MEMBRANE PROTEIN, KEYWDS 2 MONOOXYGENASE, VITAMIN D HORMONE METABOLISM, ADRENODOXIN, KEYWDS 3 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.J.ANNALORA,D.B.GOODIN,W.HONG,Q.ZHANG,E.F.JOHNSON,C.D.STOUT REVDAT 5 06-SEP-23 3K9Y 1 REMARK REVDAT 4 13-OCT-21 3K9Y 1 REMARK SEQADV REVDAT 3 25-JUL-12 3K9Y 1 REMARK VERSN REVDAT 2 02-MAR-10 3K9Y 1 JRNL REVDAT 1 15-DEC-09 3K9Y 0 JRNL AUTH A.J.ANNALORA,D.B.GOODIN,W.X.HONG,Q.ZHANG,E.F.JOHNSON, JRNL AUTH 2 C.D.STOUT JRNL TITL CRYSTAL STRUCTURE OF CYP24A1, A MITOCHONDRIAL CYTOCHROME JRNL TITL 2 P450 INVOLVED IN VITAMIN D METABOLISM. JRNL REF J.MOL.BIOL. V. 396 441 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 19961857 JRNL DOI 10.1016/J.JMB.2009.11.057 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.3 REMARK 3 NUMBER OF REFLECTIONS : 30726 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.251 REMARK 3 FREE R VALUE : 0.318 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1619 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7549 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 154 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 67.65 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 77.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.04500 REMARK 3 B22 (A**2) : -13.50500 REMARK 3 B33 (A**2) : 12.46000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -18.33400 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.605 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3K9Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000055731. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 91.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.16600 REMARK 200 R SYM (I) : 0.16600 REMARK 200 FOR THE DATA SET : 7.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 70.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 1.33200 REMARK 200 R SYM FOR SHELL (I) : 1.64200 REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1TQN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 3350, 0.1 M TRIS-HCL, 0.2M REMARK 280 POTASSIUM THIOCYANATE, 0.05M CACL, PH 8.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 91.14850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.65150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 91.14850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 40.65150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -58.31219 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 91.74367 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 33 REMARK 465 ALA A 34 REMARK 465 SER A 35 REMARK 465 ARG A 36 REMARK 465 ALA A 37 REMARK 465 PRO A 38 REMARK 465 LYS A 39 REMARK 465 GLU A 40 REMARK 465 VAL A 41 REMARK 465 PRO A 42 REMARK 465 LEU A 43 REMARK 465 CYS A 44 REMARK 465 PRO A 45 REMARK 465 LEU A 46 REMARK 465 MET A 47 REMARK 465 THR A 48 REMARK 465 ASP A 49 REMARK 465 GLY A 50 REMARK 465 GLU A 51 REMARK 465 THR A 52 REMARK 465 ARG A 53 REMARK 465 MET B 33 REMARK 465 ALA B 34 REMARK 465 SER B 35 REMARK 465 ARG B 36 REMARK 465 ALA B 37 REMARK 465 PRO B 38 REMARK 465 LYS B 39 REMARK 465 GLU B 40 REMARK 465 VAL B 41 REMARK 465 PRO B 42 REMARK 465 LEU B 43 REMARK 465 CYS B 44 REMARK 465 PRO B 45 REMARK 465 LEU B 46 REMARK 465 MET B 47 REMARK 465 THR B 48 REMARK 465 ASP B 49 REMARK 465 GLY B 50 REMARK 465 GLU B 51 REMARK 465 THR B 52 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 146 N MET A 148 2.12 REMARK 500 NH2 ARG B 159 O MET B 461 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 169 C - N - CA ANGL. DEV. = 9.6 DEGREES REMARK 500 PRO A 410 C - N - CA ANGL. DEV. = 12.1 DEGREES REMARK 500 PRO A 492 C - N - CA ANGL. DEV. = 10.1 DEGREES REMARK 500 PRO B 410 C - N - CA ANGL. DEV. = 10.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 55 -37.68 -148.79 REMARK 500 LEU A 58 -92.50 23.93 REMARK 500 PRO A 59 -149.89 -90.56 REMARK 500 THR A 62 143.25 -38.44 REMARK 500 TRP A 64 134.48 -8.07 REMARK 500 PRO A 65 145.84 -38.77 REMARK 500 LEU A 66 -47.92 47.01 REMARK 500 LEU A 70 6.93 -59.94 REMARK 500 LEU A 71 -69.57 -93.17 REMARK 500 ILE A 73 -29.63 -36.14 REMARK 500 TRP A 75 44.69 -68.13 REMARK 500 LYS A 76 -6.62 -167.83 REMARK 500 LYS A 92 -91.36 -62.61 REMARK 500 TYR A 93 13.65 -64.64 REMARK 500 GLN A 95 -42.93 -26.77 REMARK 500 PHE A 97 -159.78 -165.55 REMARK 500 SER A 113 -72.30 -70.13 REMARK 500 ALA A 117 29.97 -66.39 REMARK 500 LEU A 118 -37.94 -155.18 REMARK 500 LEU A 129 154.12 -45.34 REMARK 500 HIS A 140 -71.93 -50.45 REMARK 500 ASN A 142 64.34 66.12 REMARK 500 LEU A 147 -17.38 -23.17 REMARK 500 TRP A 155 -74.00 -61.97 REMARK 500 GLN A 156 -29.42 -32.37 REMARK 500 ARG A 159 -78.51 -45.68 REMARK 500 SER A 160 -57.46 -28.51 REMARK 500 GLN A 163 -36.68 -29.03 REMARK 500 LYS A 165 -14.41 171.38 REMARK 500 PRO A 169 -55.82 -29.03 REMARK 500 ASP A 176 -72.81 0.37 REMARK 500 ALA A 184 -76.03 -50.61 REMARK 500 ASP A 195 -77.18 -77.50 REMARK 500 GLU A 196 -14.99 -173.31 REMARK 500 PHE A 212 -71.81 -63.63 REMARK 500 LYS A 229 165.37 -42.26 REMARK 500 THR A 231 79.10 -163.39 REMARK 500 GLU A 232 -114.35 -146.51 REMARK 500 GLU A 233 -112.46 60.28 REMARK 500 PRO A 256 89.50 -53.62 REMARK 500 ALA A 270 -72.64 -60.68 REMARK 500 GLN A 295 42.82 -101.49 REMARK 500 ALA A 299 -83.28 -63.90 REMARK 500 GLN A 308 55.56 -115.10 REMARK 500 ASP A 309 4.21 -175.85 REMARK 500 HIS A 310 103.41 24.80 REMARK 500 ALA A 327 -89.15 -88.29 REMARK 500 VAL A 328 -83.99 -15.12 REMARK 500 ASP A 362 162.79 92.25 REMARK 500 GLU A 369 -64.32 142.38 REMARK 500 REMARK 500 THIS ENTRY HAS 162 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 520 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 462 SG REMARK 620 2 HEM A 520 NA 88.2 REMARK 620 3 HEM A 520 NB 88.8 90.0 REMARK 620 4 HEM A 520 NC 88.3 176.4 90.6 REMARK 620 5 HEM A 520 ND 94.2 89.6 177.0 90.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 520 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 462 SG REMARK 620 2 HEM B 520 NA 93.0 REMARK 620 3 HEM B 520 NB 93.8 90.1 REMARK 620 4 HEM B 520 NC 84.4 177.3 90.8 REMARK 620 5 HEM B 520 ND 83.5 89.6 177.2 89.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CM5 A 516 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CM5 A 517 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3K9V RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RAT MITOCHONDRIAL P450 24A1 S57D IN COMPLEX REMARK 900 WITH CHAPS DBREF 3K9Y A 34 514 UNP Q09128 CP24A_RAT 34 514 DBREF 3K9Y B 34 514 UNP Q09128 CP24A_RAT 34 514 SEQADV 3K9Y MET A 33 UNP Q09128 EXPRESSION TAG SEQADV 3K9Y ASP A 57 UNP Q09128 SER 57 ENGINEERED MUTATION SEQADV 3K9Y MET B 33 UNP Q09128 EXPRESSION TAG SEQADV 3K9Y ASP B 57 UNP Q09128 SER 57 ENGINEERED MUTATION SEQRES 1 A 482 MET ALA SER ARG ALA PRO LYS GLU VAL PRO LEU CYS PRO SEQRES 2 A 482 LEU MET THR ASP GLY GLU THR ARG ASN VAL THR ASP LEU SEQRES 3 A 482 PRO GLY PRO THR ASN TRP PRO LEU LEU GLY SER LEU LEU SEQRES 4 A 482 GLU ILE PHE TRP LYS GLY GLY LEU LYS LYS GLN HIS ASP SEQRES 5 A 482 THR LEU ALA GLU TYR HIS LYS LYS TYR GLY GLN ILE PHE SEQRES 6 A 482 ARG MET LYS LEU GLY SER PHE ASP SER VAL HIS LEU GLY SEQRES 7 A 482 SER PRO SER LEU LEU GLU ALA LEU TYR ARG THR GLU SER SEQRES 8 A 482 ALA HIS PRO GLN ARG LEU GLU ILE LYS PRO TRP LYS ALA SEQRES 9 A 482 TYR ARG ASP HIS ARG ASN GLU ALA TYR GLY LEU MET ILE SEQRES 10 A 482 LEU GLU GLY GLN GLU TRP GLN ARG VAL ARG SER ALA PHE SEQRES 11 A 482 GLN LYS LYS LEU MET LYS PRO VAL GLU ILE MET LYS LEU SEQRES 12 A 482 ASP LYS LYS ILE ASN GLU VAL LEU ALA ASP PHE LEU GLU SEQRES 13 A 482 ARG MET ASP GLU LEU CYS ASP GLU ARG GLY ARG ILE PRO SEQRES 14 A 482 ASP LEU TYR SER GLU LEU ASN LYS TRP SER PHE GLU SER SEQRES 15 A 482 ILE CYS LEU VAL LEU TYR GLU LYS ARG PHE GLY LEU LEU SEQRES 16 A 482 GLN LYS GLU THR GLU GLU GLU ALA LEU THR PHE ILE THR SEQRES 17 A 482 ALA ILE LYS THR MET MET SER THR PHE GLY LYS MET MET SEQRES 18 A 482 VAL THR PRO VAL GLU LEU HIS LYS ARG LEU ASN THR LYS SEQRES 19 A 482 VAL TRP GLN ALA HIS THR LEU ALA TRP ASP THR ILE PHE SEQRES 20 A 482 LYS SER VAL LYS PRO CYS ILE ASP ASN ARG LEU GLN ARG SEQRES 21 A 482 TYR SER GLN GLN PRO GLY ALA ASP PHE LEU CYS ASP ILE SEQRES 22 A 482 TYR GLN GLN ASP HIS LEU SER LYS LYS GLU LEU TYR ALA SEQRES 23 A 482 ALA VAL THR GLU LEU GLN LEU ALA ALA VAL GLU THR THR SEQRES 24 A 482 ALA ASN SER LEU MET TRP ILE LEU TYR ASN LEU SER ARG SEQRES 25 A 482 ASN PRO GLN ALA GLN ARG ARG LEU LEU GLN GLU VAL GLN SEQRES 26 A 482 SER VAL LEU PRO ASP ASN GLN THR PRO ARG ALA GLU ASP SEQRES 27 A 482 LEU ARG ASN MET PRO TYR LEU LYS ALA CYS LEU LYS GLU SEQRES 28 A 482 SER MET ARG LEU THR PRO SER VAL PRO PHE THR THR ARG SEQRES 29 A 482 THR LEU ASP LYS PRO THR VAL LEU GLY GLU TYR ALA LEU SEQRES 30 A 482 PRO LYS GLY THR VAL LEU THR LEU ASN THR GLN VAL LEU SEQRES 31 A 482 GLY SER SER GLU ASP ASN PHE GLU ASP SER HIS LYS PHE SEQRES 32 A 482 ARG PRO GLU ARG TRP LEU GLN LYS GLU LYS LYS ILE ASN SEQRES 33 A 482 PRO PHE ALA HIS LEU PRO PHE GLY ILE GLY LYS ARG MET SEQRES 34 A 482 CYS ILE GLY ARG ARG LEU ALA GLU LEU GLN LEU HIS LEU SEQRES 35 A 482 ALA LEU CYS TRP ILE ILE GLN LYS TYR ASP ILE VAL ALA SEQRES 36 A 482 THR ASP ASN GLU PRO VAL GLU MET LEU HIS LEU GLY ILE SEQRES 37 A 482 LEU VAL PRO SER ARG GLU LEU PRO ILE ALA PHE ARG PRO SEQRES 38 A 482 ARG SEQRES 1 B 482 MET ALA SER ARG ALA PRO LYS GLU VAL PRO LEU CYS PRO SEQRES 2 B 482 LEU MET THR ASP GLY GLU THR ARG ASN VAL THR ASP LEU SEQRES 3 B 482 PRO GLY PRO THR ASN TRP PRO LEU LEU GLY SER LEU LEU SEQRES 4 B 482 GLU ILE PHE TRP LYS GLY GLY LEU LYS LYS GLN HIS ASP SEQRES 5 B 482 THR LEU ALA GLU TYR HIS LYS LYS TYR GLY GLN ILE PHE SEQRES 6 B 482 ARG MET LYS LEU GLY SER PHE ASP SER VAL HIS LEU GLY SEQRES 7 B 482 SER PRO SER LEU LEU GLU ALA LEU TYR ARG THR GLU SER SEQRES 8 B 482 ALA HIS PRO GLN ARG LEU GLU ILE LYS PRO TRP LYS ALA SEQRES 9 B 482 TYR ARG ASP HIS ARG ASN GLU ALA TYR GLY LEU MET ILE SEQRES 10 B 482 LEU GLU GLY GLN GLU TRP GLN ARG VAL ARG SER ALA PHE SEQRES 11 B 482 GLN LYS LYS LEU MET LYS PRO VAL GLU ILE MET LYS LEU SEQRES 12 B 482 ASP LYS LYS ILE ASN GLU VAL LEU ALA ASP PHE LEU GLU SEQRES 13 B 482 ARG MET ASP GLU LEU CYS ASP GLU ARG GLY ARG ILE PRO SEQRES 14 B 482 ASP LEU TYR SER GLU LEU ASN LYS TRP SER PHE GLU SER SEQRES 15 B 482 ILE CYS LEU VAL LEU TYR GLU LYS ARG PHE GLY LEU LEU SEQRES 16 B 482 GLN LYS GLU THR GLU GLU GLU ALA LEU THR PHE ILE THR SEQRES 17 B 482 ALA ILE LYS THR MET MET SER THR PHE GLY LYS MET MET SEQRES 18 B 482 VAL THR PRO VAL GLU LEU HIS LYS ARG LEU ASN THR LYS SEQRES 19 B 482 VAL TRP GLN ALA HIS THR LEU ALA TRP ASP THR ILE PHE SEQRES 20 B 482 LYS SER VAL LYS PRO CYS ILE ASP ASN ARG LEU GLN ARG SEQRES 21 B 482 TYR SER GLN GLN PRO GLY ALA ASP PHE LEU CYS ASP ILE SEQRES 22 B 482 TYR GLN GLN ASP HIS LEU SER LYS LYS GLU LEU TYR ALA SEQRES 23 B 482 ALA VAL THR GLU LEU GLN LEU ALA ALA VAL GLU THR THR SEQRES 24 B 482 ALA ASN SER LEU MET TRP ILE LEU TYR ASN LEU SER ARG SEQRES 25 B 482 ASN PRO GLN ALA GLN ARG ARG LEU LEU GLN GLU VAL GLN SEQRES 26 B 482 SER VAL LEU PRO ASP ASN GLN THR PRO ARG ALA GLU ASP SEQRES 27 B 482 LEU ARG ASN MET PRO TYR LEU LYS ALA CYS LEU LYS GLU SEQRES 28 B 482 SER MET ARG LEU THR PRO SER VAL PRO PHE THR THR ARG SEQRES 29 B 482 THR LEU ASP LYS PRO THR VAL LEU GLY GLU TYR ALA LEU SEQRES 30 B 482 PRO LYS GLY THR VAL LEU THR LEU ASN THR GLN VAL LEU SEQRES 31 B 482 GLY SER SER GLU ASP ASN PHE GLU ASP SER HIS LYS PHE SEQRES 32 B 482 ARG PRO GLU ARG TRP LEU GLN LYS GLU LYS LYS ILE ASN SEQRES 33 B 482 PRO PHE ALA HIS LEU PRO PHE GLY ILE GLY LYS ARG MET SEQRES 34 B 482 CYS ILE GLY ARG ARG LEU ALA GLU LEU GLN LEU HIS LEU SEQRES 35 B 482 ALA LEU CYS TRP ILE ILE GLN LYS TYR ASP ILE VAL ALA SEQRES 36 B 482 THR ASP ASN GLU PRO VAL GLU MET LEU HIS LEU GLY ILE SEQRES 37 B 482 LEU VAL PRO SER ARG GLU LEU PRO ILE ALA PHE ARG PRO SEQRES 38 B 482 ARG HET HEM A 520 43 HET CM5 A 516 34 HET CM5 A 517 34 HET HEM B 520 43 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM CM5 5-CYCLOHEXYL-1-PENTYL-BETA-D-MALTOSIDE HETSYN HEM HEME HETSYN CM5 5-CYCLOHEXYLPENTYL 4-O-ALPHA-D-GLUCOPYRANOSYL-BETA-D- HETSYN 2 CM5 GLUCOPYRANOSIDE; CYMAL-5 FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 4 CM5 2(C23 H42 O11) HELIX 1 1 GLY A 78 LYS A 80 5 3 HELIX 2 2 LYS A 81 GLY A 94 1 14 HELIX 3 3 SER A 111 ARG A 120 1 10 HELIX 4 4 ILE A 131 ASN A 142 1 12 HELIX 5 5 GLU A 151 MET A 167 1 17 HELIX 6 6 LYS A 168 MET A 173 1 6 HELIX 7 7 LEU A 175 CYS A 194 1 20 HELIX 8 8 ASP A 202 TYR A 220 1 19 HELIX 9 9 GLU A 233 PHE A 249 1 17 HELIX 10 10 GLY A 250 MET A 253 5 4 HELIX 11 11 PRO A 256 ASN A 264 1 9 HELIX 12 12 THR A 265 LYS A 283 1 19 HELIX 13 13 PRO A 284 TYR A 293 1 10 HELIX 14 14 ASP A 300 GLN A 308 1 9 HELIX 15 15 SER A 312 ARG A 344 1 33 HELIX 16 16 ASN A 345 VAL A 359 1 15 HELIX 17 17 GLU A 369 MET A 374 5 6 HELIX 18 18 LEU A 377 THR A 388 1 12 HELIX 19 19 GLN A 420 SER A 425 5 6 HELIX 20 20 ASN A 448 HIS A 452 5 5 HELIX 21 21 GLY A 464 ALA A 475 1 12 HELIX 22 22 LEU A 476 LYS A 482 1 7 HELIX 23 23 ASN B 54 LEU B 58 5 5 HELIX 24 24 LEU B 71 LYS B 76 1 6 HELIX 25 25 GLY B 78 LYS B 80 5 3 HELIX 26 26 LYS B 81 GLY B 94 1 14 HELIX 27 27 SER B 111 THR B 121 1 11 HELIX 28 28 ILE B 131 ASN B 142 1 12 HELIX 29 29 GLU B 151 GLN B 163 1 13 HELIX 30 30 LYS B 168 LYS B 174 1 7 HELIX 31 31 LEU B 175 LEU B 193 1 19 HELIX 32 32 ASP B 202 GLU B 221 1 20 HELIX 33 33 ALA B 235 MET B 252 1 18 HELIX 34 34 PRO B 256 LEU B 263 1 8 HELIX 35 35 LYS B 266 ARG B 292 1 27 HELIX 36 36 ASP B 300 GLN B 308 1 9 HELIX 37 37 SER B 312 SER B 343 1 32 HELIX 38 38 ASN B 345 SER B 358 1 14 HELIX 39 39 MET B 374 MET B 385 1 12 HELIX 40 40 THR B 419 LEU B 422 5 4 HELIX 41 41 ASN B 448 HIS B 452 5 5 HELIX 42 42 GLY B 464 TYR B 483 1 20 SHEET 1 A 4 ILE A 96 LEU A 101 0 SHEET 2 A 4 PHE A 104 LEU A 109 -1 O SER A 106 N MET A 99 SHEET 3 A 4 VAL A 414 LEU A 417 1 O VAL A 414 N VAL A 107 SHEET 4 A 4 THR A 394 THR A 397 -1 N ARG A 396 O LEU A 415 SHEET 1 B 2 THR A 402 LEU A 404 0 SHEET 2 B 2 TYR A 407 LEU A 409 -1 O LEU A 409 N THR A 402 SHEET 1 C 2 TYR A 483 ALA A 487 0 SHEET 2 C 2 ILE A 509 PRO A 513 -1 O ALA A 510 N VAL A 486 SHEET 1 D 2 MET A 495 LEU A 496 0 SHEET 2 D 2 VAL A 502 PRO A 503 -1 O VAL A 502 N LEU A 496 SHEET 1 E 4 ILE B 96 LEU B 101 0 SHEET 2 E 4 PHE B 104 LEU B 109 -1 O PHE B 104 N LEU B 101 SHEET 3 E 4 VAL B 414 LEU B 417 1 O THR B 416 N VAL B 107 SHEET 4 E 4 THR B 394 THR B 397 -1 N ARG B 396 O LEU B 415 SHEET 1 F 2 THR B 402 LEU B 404 0 SHEET 2 F 2 TYR B 407 LEU B 409 -1 O LEU B 409 N THR B 402 SHEET 1 G 2 ASP B 484 ILE B 485 0 SHEET 2 G 2 PHE B 511 ARG B 512 -1 O ARG B 512 N ASP B 484 SHEET 1 H 2 MET B 495 HIS B 497 0 SHEET 2 H 2 LEU B 501 PRO B 503 -1 O VAL B 502 N LEU B 496 LINK SG CYS A 462 FE HEM A 520 1555 1555 2.28 LINK SG CYS B 462 FE HEM B 520 1555 1555 2.41 CISPEP 1 LEU A 58 PRO A 59 0 -0.46 CISPEP 2 ILE B 200 PRO B 201 0 -0.08 SITE 1 AC1 4 MET A 246 SER A 247 PHE A 249 CM5 A 517 SITE 1 AC2 5 GLN A 82 PHE A 393 HIS A 497 CM5 A 516 SITE 2 AC2 5 LEU B 66 CRYST1 182.297 81.303 108.707 90.00 122.44 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005486 0.000000 0.003487 0.00000 SCALE2 0.000000 0.012300 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010900 0.00000