HEADER IMMUNE SYSTEM 19-OCT-09 3KAA TITLE STRUCTURE OF TIM-3 IN COMPLEX WITH PHOSPHATIDYLSERINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEPATITIS A VIRUS CELLULAR RECEPTOR 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: N-TERMINAL CYS-RICH DOMAIN; COMPND 5 SYNONYM: T-CELL IMMUNOGLOBULIN AND MUCIN DOMAIN-CONTAINING PROTEIN 3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 STRAIN: BALB/C; SOURCE 6 GENE: HAVCR2, HEPATITIS A VIRUS CELLULAR RECEPTOR 2, TIM3, TIMD3; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET-27B KEYWDS IG-LIKE, PROTEIN-LIGAND COMPLEX, BETA BARREL, RECEPTOR, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR A.BALLESTEROS,C.SANTIAGO,J.M.CASASNOVAS REVDAT 3 01-NOV-23 3KAA 1 REMARK SEQADV REVDAT 2 04-DEC-13 3KAA 1 JRNL VERSN REVDAT 1 26-JAN-10 3KAA 0 JRNL AUTH R.H.DEKRUYFF,X.BU,A.BALLESTEROS,C.SANTIAGO,Y.L.CHIM,H.H.LEE, JRNL AUTH 2 P.KARISOLA,M.PICHAVANT,G.G.KAPLAN,D.T.UMETSU,G.J.FREEMAN, JRNL AUTH 3 J.M.CASASNOVAS JRNL TITL T CELL/TRANSMEMBRANE, IG, AND MUCIN-3 ALLELIC VARIANTS JRNL TITL 2 DIFFERENTIALLY RECOGNIZE PHOSPHATIDYLSERINE AND MEDIATE JRNL TITL 3 PHAGOCYTOSIS OF APOPTOTIC CELLS. JRNL REF J.IMMUNOL. V. 184 1918 2010 JRNL REFN ISSN 0022-1767 JRNL PMID 20083673 JRNL DOI 10.4049/JIMMUNOL.0903059 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 3 NUMBER OF REFLECTIONS : 4946 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.560 REMARK 3 FREE R VALUE TEST SET COUNT : 232 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 14.9339 - 4.3058 0.94 3021 146 0.1927 0.2021 REMARK 3 2 4.3058 - 3.4312 0.87 2785 142 0.2574 0.2771 REMARK 3 3 3.4312 - 3.0015 0.81 2604 114 0.3402 0.3573 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.28 REMARK 3 B_SOL : 46.37 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 1.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 82.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 94.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 8.62460 REMARK 3 B22 (A**2) : 8.62460 REMARK 3 B33 (A**2) : -20.38470 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 1766 REMARK 3 ANGLE : 0.793 2376 REMARK 3 CHIRALITY : 0.054 262 REMARK 3 PLANARITY : 0.004 298 REMARK 3 DIHEDRAL : 24.404 1086 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 30.9090 -6.2873 17.6540 REMARK 3 T TENSOR REMARK 3 T11: 0.4542 T22: 0.4413 REMARK 3 T33: 0.5269 T12: 0.1797 REMARK 3 T13: -0.2349 T23: -0.0967 REMARK 3 L TENSOR REMARK 3 L11: 0.1866 L22: 0.8782 REMARK 3 L33: 0.6613 L12: 0.1376 REMARK 3 L13: -0.1158 L23: -0.2986 REMARK 3 S TENSOR REMARK 3 S11: 0.0723 S12: 0.5962 S13: -0.0003 REMARK 3 S21: 0.2304 S22: 0.3011 S23: -0.5520 REMARK 3 S31: 0.4445 S32: 0.4363 S33: 0.0003 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 10.5879 -9.7330 33.3429 REMARK 3 T TENSOR REMARK 3 T11: 0.4500 T22: 0.4977 REMARK 3 T33: 0.4350 T12: 0.0167 REMARK 3 T13: 0.0119 T23: -0.1231 REMARK 3 L TENSOR REMARK 3 L11: 0.5447 L22: 1.9748 REMARK 3 L33: 0.7137 L12: 0.1253 REMARK 3 L13: 0.0938 L23: 0.4264 REMARK 3 S TENSOR REMARK 3 S11: -0.1046 S12: 0.4167 S13: -0.0095 REMARK 3 S21: 0.2132 S22: 0.1939 S23: 0.0402 REMARK 3 S31: 0.0160 S32: 0.1644 S33: 0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3KAA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000055743. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87260 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5225 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : 0.09400 REMARK 200 FOR THE DATA SET : 6.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.33900 REMARK 200 R SYM FOR SHELL (I) : 0.33900 REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2OYP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG 4000, 50MM NAF, 5MM CACL2, REMARK 280 0.1M SODIUM CITRATE PH 5.6, PARAFFIN OIL, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 35.96100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 20.76209 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 87.85967 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 35.96100 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 20.76209 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 87.85967 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 35.96100 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 20.76209 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 87.85967 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 35.96100 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 20.76209 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 87.85967 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 35.96100 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 20.76209 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 87.85967 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 35.96100 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 20.76209 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 87.85967 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 41.52419 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 175.71933 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 41.52419 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 175.71933 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 41.52419 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 175.71933 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 41.52419 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 175.71933 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 41.52419 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 175.71933 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 41.52419 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 175.71933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LEU A 3 REMARK 465 GLU A 4 REMARK 465 ASP A 5 REMARK 465 ALA A 113 REMARK 465 ALA A 114 REMARK 465 LEU A 115 REMARK 465 VAL A 116 REMARK 465 PRO A 117 REMARK 465 ARG A 118 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 LEU B 3 REMARK 465 GLU B 4 REMARK 465 ALA B 114 REMARK 465 LEU B 115 REMARK 465 VAL B 116 REMARK 465 PRO B 117 REMARK 465 ARG B 118 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 19 116.13 -172.23 REMARK 500 THR A 25 -77.34 -46.21 REMARK 500 PHE A 38 139.29 -39.53 REMARK 500 PRO A 40 -112.40 -76.24 REMARK 500 TRP A 41 -19.07 -142.36 REMARK 500 GLN A 43 178.13 76.82 REMARK 500 ASP A 52 -136.44 -94.99 REMARK 500 ARG A 54 91.06 40.77 REMARK 500 ASN A 55 175.38 67.73 REMARK 500 GLN A 59 75.12 -156.11 REMARK 500 LYS A 60 11.42 -63.97 REMARK 500 SER A 61 133.55 -38.29 REMARK 500 SER A 62 -63.36 179.85 REMARK 500 ASN A 81 95.19 42.21 REMARK 500 ASN A 101 -91.65 -94.33 REMARK 500 ASP A 102 101.63 43.72 REMARK 500 MET B 32 -173.57 -170.04 REMARK 500 CYS B 33 144.32 -170.07 REMARK 500 PRO B 40 -114.75 -67.09 REMARK 500 TRP B 41 -14.95 -148.32 REMARK 500 GLN B 43 -151.77 55.35 REMARK 500 ASP B 52 -148.80 -104.86 REMARK 500 THR B 57 -78.33 -93.13 REMARK 500 GLN B 59 108.45 -167.75 REMARK 500 ASN B 71 8.26 -64.80 REMARK 500 ASN B 101 -5.75 -149.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 52 GLU A 53 143.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PSF B 120 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 119 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PSF B 120 DBREF 3KAA A 2 114 UNP Q3KP82 Q3KP82_MOUSE 21 133 DBREF 3KAA B 2 114 UNP Q3KP82 Q3KP82_MOUSE 21 133 SEQADV 3KAA MET A 1 UNP Q3KP82 INITIATING METHIONINE SEQADV 3KAA LEU A 115 UNP Q3KP82 EXPRESSION TAG SEQADV 3KAA VAL A 116 UNP Q3KP82 EXPRESSION TAG SEQADV 3KAA PRO A 117 UNP Q3KP82 EXPRESSION TAG SEQADV 3KAA ARG A 118 UNP Q3KP82 EXPRESSION TAG SEQADV 3KAA MET B 1 UNP Q3KP82 INITIATING METHIONINE SEQADV 3KAA LEU B 115 UNP Q3KP82 EXPRESSION TAG SEQADV 3KAA VAL B 116 UNP Q3KP82 EXPRESSION TAG SEQADV 3KAA PRO B 117 UNP Q3KP82 EXPRESSION TAG SEQADV 3KAA ARG B 118 UNP Q3KP82 EXPRESSION TAG SEQRES 1 A 118 MET SER LEU GLU ASP GLY TYR LYS VAL GLU VAL GLY LYS SEQRES 2 A 118 ASN ALA TYR LEU PRO CYS SER TYR THR LEU PRO THR SER SEQRES 3 A 118 GLY THR LEU VAL PRO MET CYS TRP GLY LYS GLY PHE CYS SEQRES 4 A 118 PRO TRP SER GLN CYS THR ASN GLU LEU LEU ARG THR ASP SEQRES 5 A 118 GLU ARG ASN VAL THR TYR GLN LYS SER SER ARG TYR GLN SEQRES 6 A 118 LEU LYS GLY ASP LEU ASN LYS GLY ASP VAL SER LEU ILE SEQRES 7 A 118 ILE LYS ASN VAL THR LEU ASP ASP HIS GLY THR TYR CYS SEQRES 8 A 118 CYS ARG ILE GLN PHE PRO GLY LEU MET ASN ASP LYS LYS SEQRES 9 A 118 LEU GLU LEU LYS LEU ASP ILE LYS ALA ALA LEU VAL PRO SEQRES 10 A 118 ARG SEQRES 1 B 118 MET SER LEU GLU ASP GLY TYR LYS VAL GLU VAL GLY LYS SEQRES 2 B 118 ASN ALA TYR LEU PRO CYS SER TYR THR LEU PRO THR SER SEQRES 3 B 118 GLY THR LEU VAL PRO MET CYS TRP GLY LYS GLY PHE CYS SEQRES 4 B 118 PRO TRP SER GLN CYS THR ASN GLU LEU LEU ARG THR ASP SEQRES 5 B 118 GLU ARG ASN VAL THR TYR GLN LYS SER SER ARG TYR GLN SEQRES 6 B 118 LEU LYS GLY ASP LEU ASN LYS GLY ASP VAL SER LEU ILE SEQRES 7 B 118 ILE LYS ASN VAL THR LEU ASP ASP HIS GLY THR TYR CYS SEQRES 8 B 118 CYS ARG ILE GLN PHE PRO GLY LEU MET ASN ASP LYS LYS SEQRES 9 B 118 LEU GLU LEU LYS LEU ASP ILE LYS ALA ALA LEU VAL PRO SEQRES 10 B 118 ARG HET CA B 119 1 HET PSF B 120 16 HETNAM CA CALCIUM ION HETNAM PSF 1,2-DICAPROYL-SN-PHOSPHATIDYL-L-SERINE HETSYN PSF PHOSPHATIDYLSERINE FORMUL 3 CA CA 2+ FORMUL 4 PSF C18 H34 N O10 P FORMUL 5 HOH *2(H2 O) HELIX 1 1 ASP A 69 GLY A 73 5 5 HELIX 2 2 THR A 83 HIS A 87 5 5 HELIX 3 3 ASP B 69 GLY B 73 5 5 HELIX 4 4 THR B 83 HIS B 87 5 5 SHEET 1 A 6 TYR A 7 VAL A 9 0 SHEET 2 A 6 GLU A 106 ILE A 111 1 O ASP A 110 N TYR A 7 SHEET 3 A 6 GLY A 88 ILE A 94 -1 N GLY A 88 O LEU A 109 SHEET 4 A 6 MET A 32 GLY A 35 -1 N CYS A 33 O ARG A 93 SHEET 5 A 6 GLU A 47 THR A 51 -1 O LEU A 48 N TRP A 34 SHEET 6 A 6 VAL A 56 TYR A 58 -1 O THR A 57 N ARG A 50 SHEET 1 B 3 ALA A 15 LEU A 17 0 SHEET 2 B 3 LEU A 77 ILE A 79 -1 O ILE A 79 N ALA A 15 SHEET 3 B 3 TYR A 64 LEU A 66 -1 N GLN A 65 O ILE A 78 SHEET 1 C 6 TYR B 7 GLU B 10 0 SHEET 2 C 6 LYS B 103 LYS B 112 1 O LYS B 108 N TYR B 7 SHEET 3 C 6 GLY B 88 ILE B 94 -1 N GLY B 88 O LEU B 109 SHEET 4 C 6 MET B 32 GLY B 35 -1 N CYS B 33 O ARG B 93 SHEET 5 C 6 GLU B 47 THR B 51 -1 O LEU B 49 N TRP B 34 SHEET 6 C 6 VAL B 56 GLN B 59 -1 O THR B 57 N ARG B 50 SHEET 1 D 3 ALA B 15 LEU B 17 0 SHEET 2 D 3 LEU B 77 ILE B 79 -1 O ILE B 79 N ALA B 15 SHEET 3 D 3 TYR B 64 LEU B 66 -1 N GLN B 65 O ILE B 78 SSBOND 1 CYS A 19 CYS A 92 1555 1555 2.03 SSBOND 2 CYS A 33 CYS A 44 1555 1555 2.06 SSBOND 3 CYS A 39 CYS A 91 1555 1555 2.01 SSBOND 4 CYS B 19 CYS B 92 1555 1555 2.03 SSBOND 5 CYS B 33 CYS B 44 1555 1555 2.03 SSBOND 6 CYS B 39 CYS B 91 1555 1555 2.03 SITE 1 AC1 5 PHE B 96 GLY B 98 ASN B 101 ASP B 102 SITE 2 AC1 5 PSF B 120 SITE 1 AC2 10 MET A 100 TRP B 41 SER B 42 GLN B 43 SITE 2 AC2 10 ARG B 93 GLN B 95 LEU B 99 MET B 100 SITE 3 AC2 10 ASP B 102 CA B 119 CRYST1 71.922 71.922 263.579 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013904 0.008027 0.000000 0.00000 SCALE2 0.000000 0.016055 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003794 0.00000