HEADER PROTEIN BINDING 19-OCT-09 3KAE TITLE CDC27 N-TERMINUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: POSSIBLE PROTEIN OF NUCLEAR SCAFFOLD; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN, RESIDUES 1-242; COMPND 5 SYNONYM: CDC27; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENCEPHALITOZOON CUNICULI; SOURCE 3 ORGANISM_TAXID: 6035; SOURCE 4 GENE: NC_003237; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: POPINS KEYWDS TETRATRICOPEPTIDE REPEAT PROTEIN, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR D.BARFORD,Z.ZHANG,S.M.ROE REVDAT 4 20-MAR-24 3KAE 1 REMARK REVDAT 3 26-FEB-14 3KAE 1 JRNL VERSN REVDAT 2 14-APR-10 3KAE 1 MTRIX1 MTRIX2 MTRIX3 REVDAT 1 23-MAR-10 3KAE 0 JRNL AUTH Z.ZHANG,S.M.ROE,M.DIOGON,E.KONG,H.EL ALAOUI,D.BARFORD JRNL TITL MOLECULAR STRUCTURE OF THE N-TERMINAL DOMAIN OF THE APC/C JRNL TITL 2 SUBUNIT CDC27 REVEALS A HOMO-DIMERIC TETRATRICOPEPTIDE JRNL TITL 3 REPEAT ARCHITECTURE JRNL REF J.MOL.BIOL. V. 397 1316 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 20206185 JRNL DOI 10.1016/J.JMB.2010.02.045 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.53 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 39813 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 2008 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 53.5470 - 4.9500 0.96 3806 220 0.1970 0.2240 REMARK 3 2 4.9500 - 3.9300 0.96 3854 206 0.1920 0.2420 REMARK 3 3 3.9300 - 3.4330 0.96 3823 191 0.1870 0.2080 REMARK 3 4 3.4330 - 3.1190 0.95 3809 193 0.2120 0.2820 REMARK 3 5 3.1190 - 2.8960 0.94 3759 189 0.2250 0.3150 REMARK 3 6 2.8960 - 2.7250 0.95 3801 223 0.2330 0.2910 REMARK 3 7 2.7250 - 2.5890 0.94 3818 194 0.2370 0.3040 REMARK 3 8 2.5890 - 2.4760 0.95 3722 184 0.2440 0.3110 REMARK 3 9 2.4760 - 2.3810 0.95 3830 216 0.2730 0.3290 REMARK 3 10 2.3810 - 2.2980 0.91 3583 192 0.2970 0.3270 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 67.20 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 10.92500 REMARK 3 B22 (A**2) : -16.32900 REMARK 3 B33 (A**2) : 5.40400 REMARK 3 B12 (A**2) : 1.02800 REMARK 3 B13 (A**2) : -2.36800 REMARK 3 B23 (A**2) : -2.47900 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 7291 REMARK 3 ANGLE : 0.968 9836 REMARK 3 CHIRALITY : 0.069 1080 REMARK 3 PLANARITY : 0.004 1256 REMARK 3 DIHEDRAL : 15.969 2600 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 26.9073 -6.1192 -28.4702 REMARK 3 T TENSOR REMARK 3 T11: 0.5534 T22: 0.2673 REMARK 3 T33: 0.3583 T12: 0.0104 REMARK 3 T13: -0.0423 T23: 0.0417 REMARK 3 L TENSOR REMARK 3 L11: 1.6161 L22: 2.1838 REMARK 3 L33: 1.2362 L12: 0.5880 REMARK 3 L13: -0.7595 L23: -0.1660 REMARK 3 S TENSOR REMARK 3 S11: -0.0597 S12: 0.1416 S13: 0.4601 REMARK 3 S21: -0.7747 S22: 0.1253 S23: -0.0387 REMARK 3 S31: -0.4225 S32: -0.0408 S33: -0.0506 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 7.3480 26.2333 14.4307 REMARK 3 T TENSOR REMARK 3 T11: 0.4432 T22: 0.2417 REMARK 3 T33: 0.2875 T12: 0.0112 REMARK 3 T13: 0.0085 T23: 0.0116 REMARK 3 L TENSOR REMARK 3 L11: 1.6891 L22: 2.5129 REMARK 3 L33: 1.9109 L12: 0.5344 REMARK 3 L13: 0.1810 L23: -1.5328 REMARK 3 S TENSOR REMARK 3 S11: -0.1892 S12: 0.1436 S13: 0.2331 REMARK 3 S21: -0.6386 S22: 0.0917 S23: 0.1685 REMARK 3 S31: -0.0153 S32: -0.0441 S33: 0.1025 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): 24.6527 -26.9051 -14.1069 REMARK 3 T TENSOR REMARK 3 T11: 0.4278 T22: 0.2982 REMARK 3 T33: 0.3165 T12: -0.0085 REMARK 3 T13: 0.0134 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 1.4414 L22: 2.8044 REMARK 3 L33: 2.1167 L12: -0.3221 REMARK 3 L13: -0.0015 L23: -1.8225 REMARK 3 S TENSOR REMARK 3 S11: -0.1347 S12: -0.1371 S13: -0.2246 REMARK 3 S21: 0.5253 S22: 0.0765 S23: 0.0874 REMARK 3 S31: 0.0178 S32: -0.0446 S33: 0.0700 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): 9.3763 5.8476 28.8973 REMARK 3 T TENSOR REMARK 3 T11: 0.5780 T22: 0.2959 REMARK 3 T33: 0.3744 T12: 0.0016 REMARK 3 T13: 0.0738 T23: 0.0275 REMARK 3 L TENSOR REMARK 3 L11: 1.4847 L22: 2.1976 REMARK 3 L33: 1.1173 L12: -0.4514 REMARK 3 L13: 0.9969 L23: -0.2079 REMARK 3 S TENSOR REMARK 3 S11: -0.0450 S12: -0.2017 S13: -0.4400 REMARK 3 S21: 0.7973 S22: 0.1544 S23: -0.1107 REMARK 3 S31: 0.4044 S32: -0.0017 S33: -0.0897 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN 'A' AND (RESSEQ 3:29 OR RESSEQ REMARK 3 36:162 OR RESSEQ 175:241 ) REMARK 3 SELECTION : CHAIN 'B' AND (RESSEQ 3:29 OR RESSEQ REMARK 3 36:162 OR RESSEQ 175:241 ) REMARK 3 ATOM PAIRS NUMBER : 1688 REMARK 3 RMSD : 0.054 REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: CHAIN 'A' AND (RESSEQ 3:29 OR RESSEQ REMARK 3 36:162 OR RESSEQ 175:241 ) REMARK 3 SELECTION : CHAIN 'C' AND (RESSEQ 3:29 OR RESSEQ REMARK 3 36:162 OR RESSEQ 175:241 ) REMARK 3 ATOM PAIRS NUMBER : 1676 REMARK 3 RMSD : 0.056 REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: CHAIN 'A' AND (RESSEQ 3:29 OR RESSEQ REMARK 3 36:162 OR RESSEQ 175:241 ) REMARK 3 SELECTION : CHAIN 'D' AND (RESSEQ 3:29 OR RESSEQ REMARK 3 36:162 OR RESSEQ 175:241 ) REMARK 3 ATOM PAIRS NUMBER : 1717 REMARK 3 RMSD : 0.044 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3KAE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000055747. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.9 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40000 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.298 REMARK 200 RESOLUTION RANGE LOW (A) : 85.709 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04900 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 PRO A 30 REMARK 465 CYS A 31 REMARK 465 LYS A 32 REMARK 465 PRO A 33 REMARK 465 ASP A 164 REMARK 465 LYS A 165 REMARK 465 GLU A 166 REMARK 465 ASN A 167 REMARK 465 VAL A 168 REMARK 465 ARG A 169 REMARK 465 GLN A 170 REMARK 465 THR A 171 REMARK 465 GLY A 172 REMARK 465 ARG A 173 REMARK 465 ARG A 174 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 SER B 3 REMARK 465 LYS B 165 REMARK 465 GLU B 166 REMARK 465 ASN B 167 REMARK 465 VAL B 168 REMARK 465 ARG B 169 REMARK 465 GLN B 170 REMARK 465 THR B 171 REMARK 465 GLY B 172 REMARK 465 MET C 1 REMARK 465 ASP C 2 REMARK 465 SER C 3 REMARK 465 LYS C 165 REMARK 465 GLU C 166 REMARK 465 ASN C 167 REMARK 465 VAL C 168 REMARK 465 ARG C 169 REMARK 465 GLN C 170 REMARK 465 THR C 171 REMARK 465 GLY C 172 REMARK 465 MET D 1 REMARK 465 ASP D 2 REMARK 465 PRO D 33 REMARK 465 GLU D 34 REMARK 465 ASP D 164 REMARK 465 LYS D 165 REMARK 465 GLU D 166 REMARK 465 ASN D 167 REMARK 465 VAL D 168 REMARK 465 ARG D 169 REMARK 465 GLN D 170 REMARK 465 THR D 171 REMARK 465 GLY D 172 REMARK 465 ARG D 173 REMARK 465 ARG D 174 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 4 CG CD CE NZ REMARK 470 GLU A 34 CG CD OE1 OE2 REMARK 470 TYR A 35 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 79 CG CD CE NZ REMARK 470 LYS A 83 CD CE NZ REMARK 470 ASP A 98 CG OD1 OD2 REMARK 470 GLN A 104 CG CD OE1 NE2 REMARK 470 GLU A 131 CG CD OE1 OE2 REMARK 470 LYS A 143 CG CD CE NZ REMARK 470 LYS A 162 CG CD CE NZ REMARK 470 HIS A 188 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 189 CG CD OE1 OE2 REMARK 470 LYS A 197 CG CD CE NZ REMARK 470 GLU A 201 CG CD OE1 OE2 REMARK 470 PHE A 219 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 226 CG CD CE NZ REMARK 470 LYS A 228 CG CD CE NZ REMARK 470 PHE A 231 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 232 CG CD OE1 OE2 REMARK 470 ARG A 235 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 236 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 237 CD CE NZ REMARK 470 MET A 240 SD CE REMARK 470 LEU A 242 CG CD1 CD2 REMARK 470 LYS B 4 CG CD CE NZ REMARK 470 LYS B 32 CG CD CE NZ REMARK 470 LYS B 79 CG CD CE NZ REMARK 470 LYS B 83 CG CD CE NZ REMARK 470 LYS B 92 CG CD CE NZ REMARK 470 ARG B 95 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 131 CG CD OE1 OE2 REMARK 470 LYS B 143 NZ REMARK 470 LYS B 162 CG CD CE NZ REMARK 470 ASP B 164 CG OD1 OD2 REMARK 470 ARG B 173 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 174 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 189 CG CD OE1 OE2 REMARK 470 LYS B 197 CG CD CE NZ REMARK 470 GLU B 201 CG CD OE1 OE2 REMARK 470 LYS B 226 CG CD CE NZ REMARK 470 LYS B 228 CG CD CE NZ REMARK 470 GLU B 232 CG CD OE1 OE2 REMARK 470 ARG B 235 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 236 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 242 CG CD1 CD2 REMARK 470 LYS C 4 CG CD CE NZ REMARK 470 LYS C 8 CG CD CE NZ REMARK 470 LYS C 32 CG CD CE NZ REMARK 470 PHE C 54 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS C 58 CG CD CE NZ REMARK 470 LYS C 79 CG CD CE NZ REMARK 470 LYS C 83 CG CD CE NZ REMARK 470 LYS C 92 CG CD CE NZ REMARK 470 GLU C 131 CG CD OE1 OE2 REMARK 470 GLN C 161 CG CD OE1 NE2 REMARK 470 LYS C 162 CG CD CE NZ REMARK 470 ARG C 173 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 189 CG CD OE1 OE2 REMARK 470 LYS C 197 CG CD CE NZ REMARK 470 GLU C 201 CG CD OE1 OE2 REMARK 470 LYS C 226 CG CD CE NZ REMARK 470 LYS C 228 CG CD CE NZ REMARK 470 GLU C 232 CG CD OE1 OE2 REMARK 470 ARG C 235 CD NE CZ NH1 NH2 REMARK 470 LEU C 242 CG CD1 CD2 REMARK 470 LYS D 4 CG CD CE NZ REMARK 470 LYS D 32 CG CD CE NZ REMARK 470 TYR D 35 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS D 79 CG CD CE NZ REMARK 470 LYS D 83 CE NZ REMARK 470 ASP D 98 CG OD1 OD2 REMARK 470 GLN D 104 CG CD OE1 NE2 REMARK 470 GLU D 131 CG CD OE1 OE2 REMARK 470 LYS D 162 CG CD CE NZ REMARK 470 GLU D 189 CG CD OE1 OE2 REMARK 470 LYS D 197 CG CD CE NZ REMARK 470 GLU D 201 CG CD OE1 OE2 REMARK 470 PHE D 219 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS D 226 CG CD CE NZ REMARK 470 LYS D 228 CG CD CE NZ REMARK 470 PHE D 231 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU D 232 CG CD OE1 OE2 REMARK 470 ARG D 235 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 236 CG CD NE CZ NH1 NH2 REMARK 470 MET D 240 SD CE REMARK 470 LEU D 242 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG D 139 CD - NE - CZ ANGL. DEV. = 12.1 DEGREES REMARK 500 ARG D 139 NE - CZ - NH1 ANGL. DEV. = 8.7 DEGREES REMARK 500 ARG D 139 NE - CZ - NH2 ANGL. DEV. = -8.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 35 27.82 -67.03 REMARK 500 GLU A 48 78.87 -106.74 REMARK 500 ASN A 60 73.55 -156.22 REMARK 500 ASP A 112 59.75 -93.79 REMARK 500 TYR A 129 75.65 -111.13 REMARK 500 SER A 144 145.82 -170.92 REMARK 500 ASN A 157 16.67 54.53 REMARK 500 LYS A 162 -140.12 -74.37 REMARK 500 HIS A 202 53.20 -112.24 REMARK 500 ASP A 238 59.87 -163.38 REMARK 500 GLU B 34 24.40 -70.30 REMARK 500 GLU B 48 78.18 -105.26 REMARK 500 ASN B 60 72.19 -156.59 REMARK 500 LYS B 76 19.59 58.28 REMARK 500 TYR B 129 74.48 -111.95 REMARK 500 ASN B 157 16.84 56.51 REMARK 500 LYS B 162 -147.51 -74.51 REMARK 500 HIS B 202 54.20 -112.30 REMARK 500 ASP B 238 60.86 -163.20 REMARK 500 CYS C 31 -71.03 -36.45 REMARK 500 GLU C 34 19.47 -66.56 REMARK 500 GLU C 48 79.03 -105.82 REMARK 500 ASN C 60 71.42 -157.47 REMARK 500 LYS C 76 19.94 57.31 REMARK 500 TYR C 129 74.12 -112.30 REMARK 500 ASN C 157 17.00 55.85 REMARK 500 LYS C 162 -157.64 -73.95 REMARK 500 HIS C 202 55.03 -112.20 REMARK 500 ASP C 238 61.21 -163.60 REMARK 500 PRO D 30 46.80 -59.99 REMARK 500 CYS D 31 30.21 -168.54 REMARK 500 GLU D 48 77.42 -107.03 REMARK 500 ASN D 60 73.80 -155.75 REMARK 500 TYR D 129 76.53 -111.72 REMARK 500 SER D 144 147.91 -171.87 REMARK 500 ASN D 157 16.40 55.58 REMARK 500 LYS D 162 -138.12 -75.26 REMARK 500 HIS D 202 54.35 -112.02 REMARK 500 ASP D 238 60.02 -162.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 243 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 243 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 244 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 245 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 243 DBREF 3KAE A 1 242 UNP Q8SQV4 Q8SQV4_ENCCU 1 242 DBREF 3KAE B 1 242 UNP Q8SQV4 Q8SQV4_ENCCU 1 242 DBREF 3KAE C 1 242 UNP Q8SQV4 Q8SQV4_ENCCU 1 242 DBREF 3KAE D 1 242 UNP Q8SQV4 Q8SQV4_ENCCU 1 242 SEQRES 1 A 242 MET ASP SER LYS LEU ILE GLY LYS ILE CYS LYS SER ILE SEQRES 2 A 242 ARG TYR ARG ASP TYR GLU THR ALA ILE PHE LEU ALA ALA SEQRES 3 A 242 CYS LEU LEU PRO CYS LYS PRO GLU TYR ARG MET LEU MET SEQRES 4 A 242 SER ILE VAL LEU TYR LEU ASN GLY GLU TYR THR ARG ALA SEQRES 5 A 242 LEU PHE HIS LEU HIS LYS LEU ASN THR CYS THR SER LYS SEQRES 6 A 242 TYR TYR GLU SER LEU CYS TYR LYS LYS LYS LYS ASP TYR SEQRES 7 A 242 LYS LYS ALA ILE LYS SER LEU GLU SER ILE LEU GLU GLY SEQRES 8 A 242 LYS VAL GLU ARG ASP PRO ASP VAL ASP ALA ARG ILE GLN SEQRES 9 A 242 GLU MET PHE VAL ASP PRO GLY ASP GLU GLU PHE PHE GLU SEQRES 10 A 242 SER LEU LEU GLY ASP LEU CYS THR LEU SER GLY TYR ARG SEQRES 11 A 242 GLU GLU GLY ILE GLY HIS TYR VAL ARG SER PHE GLY LYS SEQRES 12 A 242 SER PHE LEU PHE SER PRO VAL GLU ASN LEU LEU LEU GLU SEQRES 13 A 242 ASN LYS VAL PRO GLN LYS ARG ASP LYS GLU ASN VAL ARG SEQRES 14 A 242 GLN THR GLY ARG ARG GLY ILE GLU GLU GLU TYR VAL SER SEQRES 15 A 242 ASP SER ILE GLU PHE HIS GLU SER LEU SER PRO SER LEU SEQRES 16 A 242 VAL LYS LYS TYR MET GLU HIS VAL PRO GLY ILE GLY SER SEQRES 17 A 242 TYR PHE ILE SER ASN ALA ALA ARG ARG TYR PHE ASN LEU SEQRES 18 A 242 GLY MET ASN ASP LYS SER LYS ALA CYS PHE GLU LEU VAL SEQRES 19 A 242 ARG ARG LYS ASP PRO MET PHE LEU SEQRES 1 B 242 MET ASP SER LYS LEU ILE GLY LYS ILE CYS LYS SER ILE SEQRES 2 B 242 ARG TYR ARG ASP TYR GLU THR ALA ILE PHE LEU ALA ALA SEQRES 3 B 242 CYS LEU LEU PRO CYS LYS PRO GLU TYR ARG MET LEU MET SEQRES 4 B 242 SER ILE VAL LEU TYR LEU ASN GLY GLU TYR THR ARG ALA SEQRES 5 B 242 LEU PHE HIS LEU HIS LYS LEU ASN THR CYS THR SER LYS SEQRES 6 B 242 TYR TYR GLU SER LEU CYS TYR LYS LYS LYS LYS ASP TYR SEQRES 7 B 242 LYS LYS ALA ILE LYS SER LEU GLU SER ILE LEU GLU GLY SEQRES 8 B 242 LYS VAL GLU ARG ASP PRO ASP VAL ASP ALA ARG ILE GLN SEQRES 9 B 242 GLU MET PHE VAL ASP PRO GLY ASP GLU GLU PHE PHE GLU SEQRES 10 B 242 SER LEU LEU GLY ASP LEU CYS THR LEU SER GLY TYR ARG SEQRES 11 B 242 GLU GLU GLY ILE GLY HIS TYR VAL ARG SER PHE GLY LYS SEQRES 12 B 242 SER PHE LEU PHE SER PRO VAL GLU ASN LEU LEU LEU GLU SEQRES 13 B 242 ASN LYS VAL PRO GLN LYS ARG ASP LYS GLU ASN VAL ARG SEQRES 14 B 242 GLN THR GLY ARG ARG GLY ILE GLU GLU GLU TYR VAL SER SEQRES 15 B 242 ASP SER ILE GLU PHE HIS GLU SER LEU SER PRO SER LEU SEQRES 16 B 242 VAL LYS LYS TYR MET GLU HIS VAL PRO GLY ILE GLY SER SEQRES 17 B 242 TYR PHE ILE SER ASN ALA ALA ARG ARG TYR PHE ASN LEU SEQRES 18 B 242 GLY MET ASN ASP LYS SER LYS ALA CYS PHE GLU LEU VAL SEQRES 19 B 242 ARG ARG LYS ASP PRO MET PHE LEU SEQRES 1 C 242 MET ASP SER LYS LEU ILE GLY LYS ILE CYS LYS SER ILE SEQRES 2 C 242 ARG TYR ARG ASP TYR GLU THR ALA ILE PHE LEU ALA ALA SEQRES 3 C 242 CYS LEU LEU PRO CYS LYS PRO GLU TYR ARG MET LEU MET SEQRES 4 C 242 SER ILE VAL LEU TYR LEU ASN GLY GLU TYR THR ARG ALA SEQRES 5 C 242 LEU PHE HIS LEU HIS LYS LEU ASN THR CYS THR SER LYS SEQRES 6 C 242 TYR TYR GLU SER LEU CYS TYR LYS LYS LYS LYS ASP TYR SEQRES 7 C 242 LYS LYS ALA ILE LYS SER LEU GLU SER ILE LEU GLU GLY SEQRES 8 C 242 LYS VAL GLU ARG ASP PRO ASP VAL ASP ALA ARG ILE GLN SEQRES 9 C 242 GLU MET PHE VAL ASP PRO GLY ASP GLU GLU PHE PHE GLU SEQRES 10 C 242 SER LEU LEU GLY ASP LEU CYS THR LEU SER GLY TYR ARG SEQRES 11 C 242 GLU GLU GLY ILE GLY HIS TYR VAL ARG SER PHE GLY LYS SEQRES 12 C 242 SER PHE LEU PHE SER PRO VAL GLU ASN LEU LEU LEU GLU SEQRES 13 C 242 ASN LYS VAL PRO GLN LYS ARG ASP LYS GLU ASN VAL ARG SEQRES 14 C 242 GLN THR GLY ARG ARG GLY ILE GLU GLU GLU TYR VAL SER SEQRES 15 C 242 ASP SER ILE GLU PHE HIS GLU SER LEU SER PRO SER LEU SEQRES 16 C 242 VAL LYS LYS TYR MET GLU HIS VAL PRO GLY ILE GLY SER SEQRES 17 C 242 TYR PHE ILE SER ASN ALA ALA ARG ARG TYR PHE ASN LEU SEQRES 18 C 242 GLY MET ASN ASP LYS SER LYS ALA CYS PHE GLU LEU VAL SEQRES 19 C 242 ARG ARG LYS ASP PRO MET PHE LEU SEQRES 1 D 242 MET ASP SER LYS LEU ILE GLY LYS ILE CYS LYS SER ILE SEQRES 2 D 242 ARG TYR ARG ASP TYR GLU THR ALA ILE PHE LEU ALA ALA SEQRES 3 D 242 CYS LEU LEU PRO CYS LYS PRO GLU TYR ARG MET LEU MET SEQRES 4 D 242 SER ILE VAL LEU TYR LEU ASN GLY GLU TYR THR ARG ALA SEQRES 5 D 242 LEU PHE HIS LEU HIS LYS LEU ASN THR CYS THR SER LYS SEQRES 6 D 242 TYR TYR GLU SER LEU CYS TYR LYS LYS LYS LYS ASP TYR SEQRES 7 D 242 LYS LYS ALA ILE LYS SER LEU GLU SER ILE LEU GLU GLY SEQRES 8 D 242 LYS VAL GLU ARG ASP PRO ASP VAL ASP ALA ARG ILE GLN SEQRES 9 D 242 GLU MET PHE VAL ASP PRO GLY ASP GLU GLU PHE PHE GLU SEQRES 10 D 242 SER LEU LEU GLY ASP LEU CYS THR LEU SER GLY TYR ARG SEQRES 11 D 242 GLU GLU GLY ILE GLY HIS TYR VAL ARG SER PHE GLY LYS SEQRES 12 D 242 SER PHE LEU PHE SER PRO VAL GLU ASN LEU LEU LEU GLU SEQRES 13 D 242 ASN LYS VAL PRO GLN LYS ARG ASP LYS GLU ASN VAL ARG SEQRES 14 D 242 GLN THR GLY ARG ARG GLY ILE GLU GLU GLU TYR VAL SER SEQRES 15 D 242 ASP SER ILE GLU PHE HIS GLU SER LEU SER PRO SER LEU SEQRES 16 D 242 VAL LYS LYS TYR MET GLU HIS VAL PRO GLY ILE GLY SER SEQRES 17 D 242 TYR PHE ILE SER ASN ALA ALA ARG ARG TYR PHE ASN LEU SEQRES 18 D 242 GLY MET ASN ASP LYS SER LYS ALA CYS PHE GLU LEU VAL SEQRES 19 D 242 ARG ARG LYS ASP PRO MET PHE LEU HET GOL A 243 6 HET CL C 243 1 HET GOL C 244 6 HET GOL C 245 6 HET SO4 D 243 5 HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL 3(C3 H8 O3) FORMUL 6 CL CL 1- FORMUL 9 SO4 O4 S 2- FORMUL 10 HOH *118(H2 O) HELIX 1 1 LYS A 4 TYR A 15 1 12 HELIX 2 2 ASP A 17 LEU A 29 1 13 HELIX 3 3 TYR A 35 ASN A 46 1 12 HELIX 4 4 GLU A 48 LYS A 58 1 11 HELIX 5 5 THR A 61 LYS A 75 1 15 HELIX 6 6 ASP A 77 GLU A 90 1 14 HELIX 7 7 ASP A 100 GLU A 105 1 6 HELIX 8 8 ASP A 112 SER A 127 1 16 HELIX 9 9 TYR A 129 SER A 144 1 16 HELIX 10 10 LEU A 146 GLU A 156 1 11 HELIX 11 11 GLY A 175 LEU A 191 1 17 HELIX 12 12 SER A 192 GLU A 201 1 10 HELIX 13 13 GLY A 205 LEU A 221 1 17 HELIX 14 14 MET A 223 ASP A 238 1 16 HELIX 15 15 LYS B 4 TYR B 15 1 12 HELIX 16 16 ASP B 17 LYS B 32 1 16 HELIX 17 17 TYR B 35 ASN B 46 1 12 HELIX 18 18 GLU B 48 LYS B 58 1 11 HELIX 19 19 THR B 61 LYS B 75 1 15 HELIX 20 20 ASP B 77 GLU B 90 1 14 HELIX 21 21 ASP B 100 GLU B 105 1 6 HELIX 22 22 ASP B 112 SER B 127 1 16 HELIX 23 23 TYR B 129 GLY B 142 1 14 HELIX 24 24 LEU B 146 GLU B 156 1 11 HELIX 25 25 GLY B 175 LEU B 191 1 17 HELIX 26 26 SER B 192 GLU B 201 1 10 HELIX 27 27 GLY B 205 LEU B 221 1 17 HELIX 28 28 MET B 223 ASP B 238 1 16 HELIX 29 29 LYS C 4 TYR C 15 1 12 HELIX 30 30 ASP C 17 LEU C 29 1 13 HELIX 31 31 TYR C 35 ASN C 46 1 12 HELIX 32 32 GLU C 48 LYS C 58 1 11 HELIX 33 33 THR C 61 LYS C 75 1 15 HELIX 34 34 ASP C 77 GLU C 90 1 14 HELIX 35 35 ASP C 100 GLU C 105 1 6 HELIX 36 36 ASP C 112 SER C 127 1 16 HELIX 37 37 TYR C 129 SER C 144 1 16 HELIX 38 38 LEU C 146 GLU C 156 1 11 HELIX 39 39 GLY C 175 LEU C 191 1 17 HELIX 40 40 SER C 192 GLU C 201 1 10 HELIX 41 41 GLY C 205 LEU C 221 1 17 HELIX 42 42 MET C 223 ASP C 238 1 16 HELIX 43 43 LYS D 4 TYR D 15 1 12 HELIX 44 44 ASP D 17 LEU D 29 1 13 HELIX 45 45 TYR D 35 ASN D 46 1 12 HELIX 46 46 GLU D 48 LYS D 58 1 11 HELIX 47 47 THR D 61 LYS D 75 1 15 HELIX 48 48 ASP D 77 GLU D 90 1 14 HELIX 49 49 ASP D 100 GLU D 105 1 6 HELIX 50 50 ASP D 112 SER D 127 1 16 HELIX 51 51 TYR D 129 SER D 144 1 16 HELIX 52 52 LEU D 146 GLU D 156 1 11 HELIX 53 53 GLY D 175 LEU D 191 1 17 HELIX 54 54 SER D 192 GLU D 201 1 10 HELIX 55 55 GLY D 205 LEU D 221 1 17 HELIX 56 56 MET D 223 ASP D 238 1 16 CISPEP 1 VAL A 203 PRO A 204 0 4.01 CISPEP 2 VAL B 203 PRO B 204 0 2.66 CISPEP 3 VAL C 203 PRO C 204 0 2.80 CISPEP 4 VAL D 203 PRO D 204 0 4.07 SITE 1 AC1 5 GLY A 47 GLU A 48 TYR A 49 THR A 50 SITE 2 AC1 5 ARG A 51 SITE 1 AC2 1 ARG C 16 SITE 1 AC3 6 PHE C 147 GLU C 151 TYR C 209 SER C 212 SITE 2 AC3 6 ASN C 213 HOH C 269 SITE 1 AC4 7 PHE C 141 GLY C 142 LYS C 143 SER C 144 SITE 2 AC4 7 PHE C 145 ARG C 173 GLU C 178 SITE 1 AC5 5 GLY D 47 GLU D 48 TYR D 49 THR D 50 SITE 2 AC5 5 HOH D 264 CRYST1 34.720 81.890 87.445 101.43 90.07 89.99 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028802 -0.000005 0.000035 0.00000 SCALE2 0.000000 0.012212 0.002469 0.00000 SCALE3 0.000000 0.000000 0.011667 0.00000 MTRIX1 1 0.986601 0.082050 -0.141016 19.32520 1 MTRIX2 1 -0.083189 0.996531 -0.002194 -31.71400 1 MTRIX3 1 0.140347 0.013895 0.990005 -44.13560 1 MTRIX1 2 0.986474 -0.081640 0.142141 2.11575 1 MTRIX2 2 -0.082760 -0.996567 0.001980 -30.70080 1 MTRIX3 2 0.141492 -0.013717 -0.989844 -46.21830 1 MTRIX1 3 0.999998 -0.000204 0.002149 17.37230 1 MTRIX2 3 -0.000205 -1.000000 0.000183 -0.43414 1 MTRIX3 3 0.002149 -0.000184 -0.999998 0.37724 1