data_3KAI # _entry.id 3KAI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.351 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3KAI pdb_00003kai 10.2210/pdb3kai/pdb RCSB RCSB055751 ? ? WWPDB D_1000055751 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3KAB . unspecified PDB 3KAC . unspecified PDB 3KAD . unspecified PDB 3KAF . unspecified PDB 3KAG . unspecified PDB 3KAH . unspecified PDB 3KCE . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3KAI _pdbx_database_status.recvd_initial_deposition_date 2009-10-19 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Baker, L.M.' 1 'Dokurno, P.' 2 'Robinson, D.A.' 3 'Surgenor, A.E.' 4 'Murray, J.B.' 5 'Potter, A.J.' 6 'Moore, J.D.' 7 # _citation.id primary _citation.title 'Structure-guided design of alpha-amino acid-derived Pin1 inhibitors' _citation.journal_abbrev Bioorg.Med.Chem.Lett. _citation.journal_volume 20 _citation.page_first 586 _citation.page_last 590 _citation.year 2010 _citation.journal_id_ASTM BMCLE8 _citation.country UK _citation.journal_id_ISSN 0960-894X _citation.journal_id_CSD 1127 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19969456 _citation.pdbx_database_id_DOI 10.1016/j.bmcl.2009.11.090 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Potter, A.J.' 1 ? primary 'Ray, S.' 2 ? primary 'Gueritz, L.' 3 ? primary 'Nunns, C.L.' 4 ? primary 'Bryant, C.J.' 5 ? primary 'Scrace, S.F.' 6 ? primary 'Matassova, N.' 7 ? primary 'Baker, L.M.' 8 ? primary 'Dokurno, P.' 9 ? primary 'Robinson, D.A.' 10 ? primary 'Surgenor, A.E.' 11 ? primary 'Davis, B.' 12 ? primary 'Murray, J.B.' 13 ? primary 'Richardson, C.M.' 14 ? primary 'Moore, J.D.' 15 ? # _cell.entry_id 3KAI _cell.length_a 68.640 _cell.length_b 68.640 _cell.length_c 79.233 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3KAI _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1' 18524.525 1 5.2.1.8 R14A ? ? 2 non-polymer syn 'DODECAETHYLENE GLYCOL' 546.646 1 ? ? ? ? 3 non-polymer syn '(2R)-2-[(2-methyl-5-phenyl-pyrazol-3-yl)carbonylamino]-3-naphthalen-2-yl-propanoic acid' 399.442 1 ? ? ? ? 4 water nat water 18.015 116 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Rotamase Pin1, PPIase Pin1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSHGMADEEKLPPGWEKAMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARVRCSHLLVKHSQSRRPSSWRQE KITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGI HIILRTE ; _entity_poly.pdbx_seq_one_letter_code_can ;GSHGMADEEKLPPGWEKAMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARVRCSHLLVKHSQSRRPSSWRQE KITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGI HIILRTE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 GLY n 1 5 MET n 1 6 ALA n 1 7 ASP n 1 8 GLU n 1 9 GLU n 1 10 LYS n 1 11 LEU n 1 12 PRO n 1 13 PRO n 1 14 GLY n 1 15 TRP n 1 16 GLU n 1 17 LYS n 1 18 ALA n 1 19 MET n 1 20 SER n 1 21 ARG n 1 22 SER n 1 23 SER n 1 24 GLY n 1 25 ARG n 1 26 VAL n 1 27 TYR n 1 28 TYR n 1 29 PHE n 1 30 ASN n 1 31 HIS n 1 32 ILE n 1 33 THR n 1 34 ASN n 1 35 ALA n 1 36 SER n 1 37 GLN n 1 38 TRP n 1 39 GLU n 1 40 ARG n 1 41 PRO n 1 42 SER n 1 43 GLY n 1 44 ASN n 1 45 SER n 1 46 SER n 1 47 SER n 1 48 GLY n 1 49 GLY n 1 50 LYS n 1 51 ASN n 1 52 GLY n 1 53 GLN n 1 54 GLY n 1 55 GLU n 1 56 PRO n 1 57 ALA n 1 58 ARG n 1 59 VAL n 1 60 ARG n 1 61 CYS n 1 62 SER n 1 63 HIS n 1 64 LEU n 1 65 LEU n 1 66 VAL n 1 67 LYS n 1 68 HIS n 1 69 SER n 1 70 GLN n 1 71 SER n 1 72 ARG n 1 73 ARG n 1 74 PRO n 1 75 SER n 1 76 SER n 1 77 TRP n 1 78 ARG n 1 79 GLN n 1 80 GLU n 1 81 LYS n 1 82 ILE n 1 83 THR n 1 84 ARG n 1 85 THR n 1 86 LYS n 1 87 GLU n 1 88 GLU n 1 89 ALA n 1 90 LEU n 1 91 GLU n 1 92 LEU n 1 93 ILE n 1 94 ASN n 1 95 GLY n 1 96 TYR n 1 97 ILE n 1 98 GLN n 1 99 LYS n 1 100 ILE n 1 101 LYS n 1 102 SER n 1 103 GLY n 1 104 GLU n 1 105 GLU n 1 106 ASP n 1 107 PHE n 1 108 GLU n 1 109 SER n 1 110 LEU n 1 111 ALA n 1 112 SER n 1 113 GLN n 1 114 PHE n 1 115 SER n 1 116 ASP n 1 117 CYS n 1 118 SER n 1 119 SER n 1 120 ALA n 1 121 LYS n 1 122 ALA n 1 123 ARG n 1 124 GLY n 1 125 ASP n 1 126 LEU n 1 127 GLY n 1 128 ALA n 1 129 PHE n 1 130 SER n 1 131 ARG n 1 132 GLY n 1 133 GLN n 1 134 MET n 1 135 GLN n 1 136 LYS n 1 137 PRO n 1 138 PHE n 1 139 GLU n 1 140 ASP n 1 141 ALA n 1 142 SER n 1 143 PHE n 1 144 ALA n 1 145 LEU n 1 146 ARG n 1 147 THR n 1 148 GLY n 1 149 GLU n 1 150 MET n 1 151 SER n 1 152 GLY n 1 153 PRO n 1 154 VAL n 1 155 PHE n 1 156 THR n 1 157 ASP n 1 158 SER n 1 159 GLY n 1 160 ILE n 1 161 HIS n 1 162 ILE n 1 163 ILE n 1 164 LEU n 1 165 ARG n 1 166 THR n 1 167 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene PIN1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET28A _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PIN1_HUMAN _struct_ref.pdbx_db_accession Q13526 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARVRCSHLLVKHSQSRRPSSWRQEKITR TKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIIL RTE ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3KAI _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 5 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 167 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q13526 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 163 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 163 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3KAI GLY A 1 ? UNP Q13526 ? ? 'expression tag' -3 1 1 3KAI SER A 2 ? UNP Q13526 ? ? 'expression tag' -2 2 1 3KAI HIS A 3 ? UNP Q13526 ? ? 'expression tag' -1 3 1 3KAI GLY A 4 ? UNP Q13526 ? ? 'expression tag' 0 4 1 3KAI ALA A 18 ? UNP Q13526 ARG 14 'engineered mutation' 14 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 12P non-polymer . 'DODECAETHYLENE GLYCOL' 'POLYETHYLENE GLYCOL PEG400' 'C24 H50 O13' 546.646 4FI non-polymer . '(2R)-2-[(2-methyl-5-phenyl-pyrazol-3-yl)carbonylamino]-3-naphthalen-2-yl-propanoic acid' ? 'C24 H21 N3 O3' 399.442 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3KAI _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.91 _exptl_crystal.density_percent_sol 57.71 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '2.2M Ammonium sulphate, 0.1M HEPES buffer, 1% PEG 400, 5mM DTT, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV++' _diffrn_detector.pdbx_collection_date 2007-08-21 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator mirrors _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RUH3R' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 3KAI _reflns.observed_criterion_sigma_I 1 _reflns.observed_criterion_sigma_F 1 _reflns.d_resolution_low 59.44 _reflns.d_resolution_high 1.90 _reflns.number_obs 16782 _reflns.number_all 16782 _reflns.percent_possible_obs 96.1 _reflns.pdbx_Rmerge_I_obs 0.060 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 5.6 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 2.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.90 _reflns_shell.d_res_low 1.97 _reflns_shell.percent_possible_all 85.3 _reflns_shell.Rmerge_I_obs 0.353 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.7 _reflns_shell.pdbx_redundancy 2.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1010 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3KAI _refine.ls_number_reflns_obs 15921 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 29.7 _refine.ls_d_res_high 1.90 _refine.ls_percent_reflns_obs 96.01 _refine.ls_R_factor_obs 0.20802 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.20569 _refine.ls_R_factor_R_free 0.25400 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 861 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.956 _refine.correlation_coeff_Fo_to_Fc_free 0.934 _refine.B_iso_mean 32.684 _refine.aniso_B[1][1] 0.68 _refine.aniso_B[2][2] 0.68 _refine.aniso_B[3][3] -1.02 _refine.aniso_B[1][2] 0.34 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB ENTRY 1PIN' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.143 _refine.pdbx_overall_ESU_R_Free 0.144 _refine.overall_SU_ML 0.106 _refine.overall_SU_B 3.823 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1162 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 49 _refine_hist.number_atoms_solvent 116 _refine_hist.number_atoms_total 1327 _refine_hist.d_res_high 1.90 _refine_hist.d_res_low 29.7 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.026 0.021 ? 1239 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.120 1.984 ? 1660 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.197 5.000 ? 145 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 32.732 22.712 ? 59 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 15.041 15.000 ? 213 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 23.699 15.000 ? 13 'X-RAY DIFFRACTION' ? r_chiral_restr 0.152 0.200 ? 164 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.010 0.021 ? 951 'X-RAY DIFFRACTION' ? r_mcbond_it 1.326 1.500 ? 724 'X-RAY DIFFRACTION' ? r_mcangle_it 2.401 2.000 ? 1161 'X-RAY DIFFRACTION' ? r_scbond_it 3.858 3.000 ? 515 'X-RAY DIFFRACTION' ? r_scangle_it 6.291 4.500 ? 498 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.899 _refine_ls_shell.d_res_low 1.949 _refine_ls_shell.number_reflns_R_work 954 _refine_ls_shell.R_factor_R_work 0.339 _refine_ls_shell.percent_reflns_obs 81.39 _refine_ls_shell.R_factor_R_free 0.380 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 65 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 1019 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3KAI _struct.title 'Structure-guided design of alpha-amino acid-derived Pin1 inhibitors' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3KAI _struct_keywords.pdbx_keywords ISOMERASE _struct_keywords.text ;SBDD, PPIASE, ISOMERASE, ROTAMASE, SMALL MOLECULE, Proline directed kinase, cell cycle, Oncogenic transformation, Nucleus, Phosphoprotein ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 85 ? GLY A 103 ? THR A 81 GLY A 99 1 ? 19 HELX_P HELX_P2 2 ASP A 106 ? SER A 115 ? ASP A 102 SER A 111 1 ? 10 HELX_P HELX_P3 3 CYS A 117 ? ARG A 123 ? CYS A 113 ARG A 119 5 ? 7 HELX_P HELX_P4 4 GLN A 135 ? LEU A 145 ? GLN A 131 LEU A 141 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TRP A 15 ? MET A 19 ? TRP A 11 MET A 15 A 2 VAL A 26 ? ASN A 30 ? VAL A 22 ASN A 26 A 3 SER A 36 ? GLN A 37 ? SER A 32 GLN A 33 B 1 ASP A 125 ? SER A 130 ? ASP A 121 SER A 126 B 2 ARG A 58 ? VAL A 66 ? ARG A 54 VAL A 62 B 3 GLY A 159 ? GLU A 167 ? GLY A 155 GLU A 163 B 4 VAL A 154 ? THR A 156 ? VAL A 150 THR A 152 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ALA A 18 ? N ALA A 14 O TYR A 27 ? O TYR A 23 A 2 3 N TYR A 28 ? N TYR A 24 O GLN A 37 ? O GLN A 33 B 1 2 O PHE A 129 ? O PHE A 125 N VAL A 59 ? N VAL A 55 B 2 3 N ARG A 60 ? N ARG A 56 O THR A 166 ? O THR A 162 B 3 4 O HIS A 161 ? O HIS A 157 N VAL A 154 ? N VAL A 150 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 12P 164 ? 14 'BINDING SITE FOR RESIDUE 12P A 164' AC2 Software A 4FI 165 ? 13 'BINDING SITE FOR RESIDUE 4FI A 165' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 14 TYR A 27 ? TYR A 23 . ? 1_555 ? 2 AC1 14 ASN A 34 ? ASN A 30 . ? 1_555 ? 3 AC1 14 ALA A 35 ? ALA A 31 . ? 1_555 ? 4 AC1 14 SER A 36 ? SER A 32 . ? 1_555 ? 5 AC1 14 TRP A 38 ? TRP A 34 . ? 1_555 ? 6 AC1 14 ILE A 97 ? ILE A 93 . ? 1_555 ? 7 AC1 14 LYS A 101 ? LYS A 97 . ? 1_555 ? 8 AC1 14 LYS A 101 ? LYS A 97 . ? 6_555 ? 9 AC1 14 SER A 102 ? SER A 98 . ? 6_555 ? 10 AC1 14 SER A 151 ? SER A 147 . ? 1_555 ? 11 AC1 14 GLY A 152 ? GLY A 148 . ? 1_555 ? 12 AC1 14 HOH D . ? HOH A 178 . ? 1_555 ? 13 AC1 14 HOH D . ? HOH A 183 . ? 1_555 ? 14 AC1 14 HOH D . ? HOH A 215 . ? 1_555 ? 15 AC2 13 HIS A 63 ? HIS A 59 . ? 1_555 ? 16 AC2 13 LEU A 65 ? LEU A 61 . ? 1_555 ? 17 AC2 13 LYS A 67 ? LYS A 63 . ? 1_555 ? 18 AC2 13 ARG A 73 ? ARG A 69 . ? 1_555 ? 19 AC2 13 CYS A 117 ? CYS A 113 . ? 1_555 ? 20 AC2 13 SER A 118 ? SER A 114 . ? 1_555 ? 21 AC2 13 SER A 119 ? SER A 115 . ? 1_555 ? 22 AC2 13 ASP A 125 ? ASP A 121 . ? 1_555 ? 23 AC2 13 LEU A 126 ? LEU A 122 . ? 1_555 ? 24 AC2 13 GLN A 135 ? GLN A 131 . ? 1_555 ? 25 AC2 13 PHE A 138 ? PHE A 134 . ? 1_555 ? 26 AC2 13 SER A 158 ? SER A 154 . ? 1_555 ? 27 AC2 13 HOH D . ? HOH A 204 . ? 1_555 ? # _database_PDB_matrix.entry_id 3KAI _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3KAI _atom_sites.fract_transf_matrix[1][1] 0.014569 _atom_sites.fract_transf_matrix[1][2] 0.008411 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016823 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012621 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -3 ? ? ? A . n A 1 2 SER 2 -2 ? ? ? A . n A 1 3 HIS 3 -1 ? ? ? A . n A 1 4 GLY 4 0 ? ? ? A . n A 1 5 MET 5 1 ? ? ? A . n A 1 6 ALA 6 2 ? ? ? A . n A 1 7 ASP 7 3 ? ? ? A . n A 1 8 GLU 8 4 ? ? ? A . n A 1 9 GLU 9 5 ? ? ? A . n A 1 10 LYS 10 6 ? ? ? A . n A 1 11 LEU 11 7 7 LEU LEU A . n A 1 12 PRO 12 8 8 PRO PRO A . n A 1 13 PRO 13 9 9 PRO PRO A . n A 1 14 GLY 14 10 10 GLY GLY A . n A 1 15 TRP 15 11 11 TRP TRP A . n A 1 16 GLU 16 12 12 GLU GLU A . n A 1 17 LYS 17 13 13 LYS LYS A . n A 1 18 ALA 18 14 14 ALA ALA A . n A 1 19 MET 19 15 15 MET MET A . n A 1 20 SER 20 16 16 SER SER A . n A 1 21 ARG 21 17 17 ARG ARG A . n A 1 22 SER 22 18 18 SER SER A . n A 1 23 SER 23 19 19 SER SER A . n A 1 24 GLY 24 20 20 GLY GLY A . n A 1 25 ARG 25 21 21 ARG ARG A . n A 1 26 VAL 26 22 22 VAL VAL A . n A 1 27 TYR 27 23 23 TYR TYR A . n A 1 28 TYR 28 24 24 TYR TYR A . n A 1 29 PHE 29 25 25 PHE PHE A . n A 1 30 ASN 30 26 26 ASN ASN A . n A 1 31 HIS 31 27 27 HIS HIS A . n A 1 32 ILE 32 28 28 ILE ILE A . n A 1 33 THR 33 29 29 THR THR A . n A 1 34 ASN 34 30 30 ASN ASN A . n A 1 35 ALA 35 31 31 ALA ALA A . n A 1 36 SER 36 32 32 SER SER A . n A 1 37 GLN 37 33 33 GLN GLN A . n A 1 38 TRP 38 34 34 TRP TRP A . n A 1 39 GLU 39 35 35 GLU GLU A . n A 1 40 ARG 40 36 36 ARG ARG A . n A 1 41 PRO 41 37 37 PRO PRO A . n A 1 42 SER 42 38 38 SER SER A . n A 1 43 GLY 43 39 ? ? ? A . n A 1 44 ASN 44 40 ? ? ? A . n A 1 45 SER 45 41 ? ? ? A . n A 1 46 SER 46 42 ? ? ? A . n A 1 47 SER 47 43 ? ? ? A . n A 1 48 GLY 48 44 ? ? ? A . n A 1 49 GLY 49 45 ? ? ? A . n A 1 50 LYS 50 46 ? ? ? A . n A 1 51 ASN 51 47 ? ? ? A . n A 1 52 GLY 52 48 ? ? ? A . n A 1 53 GLN 53 49 ? ? ? A . n A 1 54 GLY 54 50 ? ? ? A . n A 1 55 GLU 55 51 51 GLU GLU A . n A 1 56 PRO 56 52 52 PRO PRO A . n A 1 57 ALA 57 53 53 ALA ALA A . n A 1 58 ARG 58 54 54 ARG ARG A . n A 1 59 VAL 59 55 55 VAL VAL A . n A 1 60 ARG 60 56 56 ARG ARG A . n A 1 61 CYS 61 57 57 CYS CYS A . n A 1 62 SER 62 58 58 SER SER A . n A 1 63 HIS 63 59 59 HIS HIS A . n A 1 64 LEU 64 60 60 LEU LEU A . n A 1 65 LEU 65 61 61 LEU LEU A . n A 1 66 VAL 66 62 62 VAL VAL A . n A 1 67 LYS 67 63 63 LYS LYS A . n A 1 68 HIS 68 64 64 HIS HIS A . n A 1 69 SER 69 65 65 SER SER A . n A 1 70 GLN 70 66 66 GLN GLN A . n A 1 71 SER 71 67 67 SER SER A . n A 1 72 ARG 72 68 68 ARG ARG A . n A 1 73 ARG 73 69 69 ARG ARG A . n A 1 74 PRO 74 70 70 PRO PRO A . n A 1 75 SER 75 71 71 SER SER A . n A 1 76 SER 76 72 72 SER SER A . n A 1 77 TRP 77 73 73 TRP TRP A . n A 1 78 ARG 78 74 74 ARG ARG A . n A 1 79 GLN 79 75 75 GLN GLN A . n A 1 80 GLU 80 76 76 GLU GLU A . n A 1 81 LYS 81 77 77 LYS LYS A . n A 1 82 ILE 82 78 78 ILE ILE A . n A 1 83 THR 83 79 79 THR THR A . n A 1 84 ARG 84 80 80 ARG ARG A . n A 1 85 THR 85 81 81 THR THR A . n A 1 86 LYS 86 82 82 LYS LYS A . n A 1 87 GLU 87 83 83 GLU GLU A . n A 1 88 GLU 88 84 84 GLU GLU A . n A 1 89 ALA 89 85 85 ALA ALA A . n A 1 90 LEU 90 86 86 LEU LEU A . n A 1 91 GLU 91 87 87 GLU GLU A . n A 1 92 LEU 92 88 88 LEU LEU A . n A 1 93 ILE 93 89 89 ILE ILE A . n A 1 94 ASN 94 90 90 ASN ASN A . n A 1 95 GLY 95 91 91 GLY GLY A . n A 1 96 TYR 96 92 92 TYR TYR A . n A 1 97 ILE 97 93 93 ILE ILE A . n A 1 98 GLN 98 94 94 GLN GLN A . n A 1 99 LYS 99 95 95 LYS LYS A . n A 1 100 ILE 100 96 96 ILE ILE A . n A 1 101 LYS 101 97 97 LYS LYS A . n A 1 102 SER 102 98 98 SER SER A . n A 1 103 GLY 103 99 99 GLY GLY A . n A 1 104 GLU 104 100 100 GLU GLU A . n A 1 105 GLU 105 101 101 GLU GLU A . n A 1 106 ASP 106 102 102 ASP ASP A . n A 1 107 PHE 107 103 103 PHE PHE A . n A 1 108 GLU 108 104 104 GLU GLU A . n A 1 109 SER 109 105 105 SER SER A . n A 1 110 LEU 110 106 106 LEU LEU A . n A 1 111 ALA 111 107 107 ALA ALA A . n A 1 112 SER 112 108 108 SER SER A . n A 1 113 GLN 113 109 109 GLN GLN A . n A 1 114 PHE 114 110 110 PHE PHE A . n A 1 115 SER 115 111 111 SER SER A . n A 1 116 ASP 116 112 112 ASP ASP A . n A 1 117 CYS 117 113 113 CYS CYS A . n A 1 118 SER 118 114 114 SER SER A . n A 1 119 SER 119 115 115 SER SER A . n A 1 120 ALA 120 116 116 ALA ALA A . n A 1 121 LYS 121 117 117 LYS LYS A . n A 1 122 ALA 122 118 118 ALA ALA A . n A 1 123 ARG 123 119 119 ARG ARG A . n A 1 124 GLY 124 120 120 GLY GLY A . n A 1 125 ASP 125 121 121 ASP ASP A . n A 1 126 LEU 126 122 122 LEU LEU A . n A 1 127 GLY 127 123 123 GLY GLY A . n A 1 128 ALA 128 124 124 ALA ALA A . n A 1 129 PHE 129 125 125 PHE PHE A . n A 1 130 SER 130 126 126 SER SER A . n A 1 131 ARG 131 127 127 ARG ARG A . n A 1 132 GLY 132 128 128 GLY GLY A . n A 1 133 GLN 133 129 129 GLN GLN A . n A 1 134 MET 134 130 130 MET MET A . n A 1 135 GLN 135 131 131 GLN GLN A . n A 1 136 LYS 136 132 132 LYS LYS A . n A 1 137 PRO 137 133 133 PRO PRO A . n A 1 138 PHE 138 134 134 PHE PHE A . n A 1 139 GLU 139 135 135 GLU GLU A . n A 1 140 ASP 140 136 136 ASP ASP A . n A 1 141 ALA 141 137 137 ALA ALA A . n A 1 142 SER 142 138 138 SER SER A . n A 1 143 PHE 143 139 139 PHE PHE A . n A 1 144 ALA 144 140 140 ALA ALA A . n A 1 145 LEU 145 141 141 LEU LEU A . n A 1 146 ARG 146 142 142 ARG ARG A . n A 1 147 THR 147 143 143 THR THR A . n A 1 148 GLY 148 144 144 GLY GLY A . n A 1 149 GLU 149 145 145 GLU GLU A . n A 1 150 MET 150 146 146 MET MET A . n A 1 151 SER 151 147 147 SER SER A . n A 1 152 GLY 152 148 148 GLY GLY A . n A 1 153 PRO 153 149 149 PRO PRO A . n A 1 154 VAL 154 150 150 VAL VAL A . n A 1 155 PHE 155 151 151 PHE PHE A . n A 1 156 THR 156 152 152 THR THR A . n A 1 157 ASP 157 153 153 ASP ASP A . n A 1 158 SER 158 154 154 SER SER A . n A 1 159 GLY 159 155 155 GLY GLY A . n A 1 160 ILE 160 156 156 ILE ILE A . n A 1 161 HIS 161 157 157 HIS HIS A . n A 1 162 ILE 162 158 158 ILE ILE A . n A 1 163 ILE 163 159 159 ILE ILE A . n A 1 164 LEU 164 160 160 LEU LEU A . n A 1 165 ARG 165 161 161 ARG ARG A . n A 1 166 THR 166 162 162 THR THR A . n A 1 167 GLU 167 163 163 GLU GLU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 12P 1 164 1 12P 12P A . C 3 4FI 1 165 1 4FI 4FI A . D 4 HOH 1 166 1 HOH HOH A . D 4 HOH 2 167 2 HOH HOH A . D 4 HOH 3 168 3 HOH HOH A . D 4 HOH 4 169 4 HOH HOH A . D 4 HOH 5 170 5 HOH HOH A . D 4 HOH 6 171 6 HOH HOH A . D 4 HOH 7 172 7 HOH HOH A . D 4 HOH 8 173 8 HOH HOH A . D 4 HOH 9 174 9 HOH HOH A . D 4 HOH 10 175 10 HOH HOH A . D 4 HOH 11 176 11 HOH HOH A . D 4 HOH 12 177 12 HOH HOH A . D 4 HOH 13 178 13 HOH HOH A . D 4 HOH 14 179 14 HOH HOH A . D 4 HOH 15 180 15 HOH HOH A . D 4 HOH 16 181 16 HOH HOH A . D 4 HOH 17 182 17 HOH HOH A . D 4 HOH 18 183 18 HOH HOH A . D 4 HOH 19 184 19 HOH HOH A . D 4 HOH 20 185 20 HOH HOH A . D 4 HOH 21 186 21 HOH HOH A . D 4 HOH 22 187 22 HOH HOH A . D 4 HOH 23 188 23 HOH HOH A . D 4 HOH 24 189 24 HOH HOH A . D 4 HOH 25 190 28 HOH HOH A . D 4 HOH 26 191 30 HOH HOH A . D 4 HOH 27 192 31 HOH HOH A . D 4 HOH 28 193 32 HOH HOH A . D 4 HOH 29 194 33 HOH HOH A . D 4 HOH 30 195 34 HOH HOH A . D 4 HOH 31 196 35 HOH HOH A . D 4 HOH 32 197 36 HOH HOH A . D 4 HOH 33 198 37 HOH HOH A . D 4 HOH 34 199 38 HOH HOH A . D 4 HOH 35 200 39 HOH HOH A . D 4 HOH 36 201 40 HOH HOH A . D 4 HOH 37 202 41 HOH HOH A . D 4 HOH 38 203 42 HOH HOH A . D 4 HOH 39 204 43 HOH HOH A . D 4 HOH 40 205 44 HOH HOH A . D 4 HOH 41 206 45 HOH HOH A . D 4 HOH 42 207 46 HOH HOH A . D 4 HOH 43 208 48 HOH HOH A . D 4 HOH 44 209 49 HOH HOH A . D 4 HOH 45 210 50 HOH HOH A . D 4 HOH 46 211 51 HOH HOH A . D 4 HOH 47 212 52 HOH HOH A . D 4 HOH 48 213 54 HOH HOH A . D 4 HOH 49 214 55 HOH HOH A . D 4 HOH 50 215 57 HOH HOH A . D 4 HOH 51 216 59 HOH HOH A . D 4 HOH 52 217 63 HOH HOH A . D 4 HOH 53 218 66 HOH HOH A . D 4 HOH 54 219 69 HOH HOH A . D 4 HOH 55 220 70 HOH HOH A . D 4 HOH 56 221 71 HOH HOH A . D 4 HOH 57 222 73 HOH HOH A . D 4 HOH 58 223 75 HOH HOH A . D 4 HOH 59 224 78 HOH HOH A . D 4 HOH 60 225 79 HOH HOH A . D 4 HOH 61 226 83 HOH HOH A . D 4 HOH 62 227 84 HOH HOH A . D 4 HOH 63 228 85 HOH HOH A . D 4 HOH 64 229 86 HOH HOH A . D 4 HOH 65 230 87 HOH HOH A . D 4 HOH 66 231 88 HOH HOH A . D 4 HOH 67 232 89 HOH HOH A . D 4 HOH 68 233 90 HOH HOH A . D 4 HOH 69 234 91 HOH HOH A . D 4 HOH 70 235 92 HOH HOH A . D 4 HOH 71 236 93 HOH HOH A . D 4 HOH 72 237 94 HOH HOH A . D 4 HOH 73 238 95 HOH HOH A . D 4 HOH 74 239 96 HOH HOH A . D 4 HOH 75 240 97 HOH HOH A . D 4 HOH 76 241 98 HOH HOH A . D 4 HOH 77 242 99 HOH HOH A . D 4 HOH 78 243 100 HOH HOH A . D 4 HOH 79 244 101 HOH HOH A . D 4 HOH 80 245 102 HOH HOH A . D 4 HOH 81 246 103 HOH HOH A . D 4 HOH 82 247 104 HOH HOH A . D 4 HOH 83 248 105 HOH HOH A . D 4 HOH 84 249 106 HOH HOH A . D 4 HOH 85 250 107 HOH HOH A . D 4 HOH 86 251 108 HOH HOH A . D 4 HOH 87 252 109 HOH HOH A . D 4 HOH 88 253 110 HOH HOH A . D 4 HOH 89 254 111 HOH HOH A . D 4 HOH 90 255 112 HOH HOH A . D 4 HOH 91 256 113 HOH HOH A . D 4 HOH 92 257 114 HOH HOH A . D 4 HOH 93 258 115 HOH HOH A . D 4 HOH 94 259 116 HOH HOH A . D 4 HOH 95 260 117 HOH HOH A . D 4 HOH 96 261 118 HOH HOH A . D 4 HOH 97 262 119 HOH HOH A . D 4 HOH 98 263 120 HOH HOH A . D 4 HOH 99 264 121 HOH HOH A . D 4 HOH 100 265 122 HOH HOH A . D 4 HOH 101 266 123 HOH HOH A . D 4 HOH 102 267 124 HOH HOH A . D 4 HOH 103 268 125 HOH HOH A . D 4 HOH 104 269 126 HOH HOH A . D 4 HOH 105 270 127 HOH HOH A . D 4 HOH 106 271 128 HOH HOH A . D 4 HOH 107 272 129 HOH HOH A . D 4 HOH 108 273 130 HOH HOH A . D 4 HOH 109 274 131 HOH HOH A . D 4 HOH 110 275 132 HOH HOH A . D 4 HOH 111 276 133 HOH HOH A . D 4 HOH 112 277 134 HOH HOH A . D 4 HOH 113 278 135 HOH HOH A . D 4 HOH 114 279 136 HOH HOH A . D 4 HOH 115 280 137 HOH HOH A . D 4 HOH 116 281 138 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-12-22 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2021-11-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' struct_ref_seq_dif 3 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CrystalClear 'data collection' . ? 1 AMoRE phasing . ? 2 REFMAC refinement 5.5.0072 ? 3 d*TREK 'data reduction' . ? 4 d*TREK 'data scaling' . ? 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OE2 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GLU _pdbx_validate_close_contact.auth_seq_id_1 101 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 267 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.14 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C A LEU 7 ? ? N A PRO 8 ? ? CA A PRO 8 ? ? 128.62 119.30 9.32 1.50 Y 2 1 NE A ARG 21 ? ? CZ A ARG 21 ? ? NH2 A ARG 21 ? ? 116.16 120.30 -4.14 0.50 N 3 1 NE A ARG 161 ? ? CZ A ARG 161 ? ? NH1 A ARG 161 ? ? 123.80 120.30 3.50 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 8 ? ? -35.71 162.28 2 1 PRO A 9 ? ? -41.86 103.30 3 1 PRO A 70 ? ? -69.66 51.25 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 A 12P 164 ? O37 ? B 12P 1 O37 2 1 N 1 A 12P 164 ? C36 ? B 12P 1 C36 3 1 N 1 A 12P 164 ? C35 ? B 12P 1 C35 4 1 N 1 A 12P 164 ? O34 ? B 12P 1 O34 5 1 N 1 A 12P 164 ? C33 ? B 12P 1 C33 6 1 N 1 A 12P 164 ? O13 ? B 12P 1 O13 7 1 N 1 A 12P 164 ? C12 ? B 12P 1 C12 8 1 N 1 A 12P 164 ? C11 ? B 12P 1 C11 9 1 N 1 A 12P 164 ? O10 ? B 12P 1 O10 10 1 N 1 A 12P 164 ? C9 ? B 12P 1 C9 11 1 N 1 A 12P 164 ? C8 ? B 12P 1 C8 12 1 N 1 A 12P 164 ? O7 ? B 12P 1 O7 13 1 N 1 A 12P 164 ? C6 ? B 12P 1 C6 14 1 N 1 A 12P 164 ? C5 ? B 12P 1 C5 15 1 N 1 A 12P 164 ? O4 ? B 12P 1 O4 16 1 N 1 A 12P 164 ? C3 ? B 12P 1 C3 17 1 N 1 A 12P 164 ? C2 ? B 12P 1 C2 18 1 N 1 A 12P 164 ? O1 ? B 12P 1 O1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -3 ? A GLY 1 2 1 Y 1 A SER -2 ? A SER 2 3 1 Y 1 A HIS -1 ? A HIS 3 4 1 Y 1 A GLY 0 ? A GLY 4 5 1 Y 1 A MET 1 ? A MET 5 6 1 Y 1 A ALA 2 ? A ALA 6 7 1 Y 1 A ASP 3 ? A ASP 7 8 1 Y 1 A GLU 4 ? A GLU 8 9 1 Y 1 A GLU 5 ? A GLU 9 10 1 Y 1 A LYS 6 ? A LYS 10 11 1 Y 1 A GLY 39 ? A GLY 43 12 1 Y 1 A ASN 40 ? A ASN 44 13 1 Y 1 A SER 41 ? A SER 45 14 1 Y 1 A SER 42 ? A SER 46 15 1 Y 1 A SER 43 ? A SER 47 16 1 Y 1 A GLY 44 ? A GLY 48 17 1 Y 1 A GLY 45 ? A GLY 49 18 1 Y 1 A LYS 46 ? A LYS 50 19 1 Y 1 A ASN 47 ? A ASN 51 20 1 Y 1 A GLY 48 ? A GLY 52 21 1 Y 1 A GLN 49 ? A GLN 53 22 1 Y 1 A GLY 50 ? A GLY 54 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'DODECAETHYLENE GLYCOL' 12P 3 '(2R)-2-[(2-methyl-5-phenyl-pyrazol-3-yl)carbonylamino]-3-naphthalen-2-yl-propanoic acid' 4FI 4 water HOH #