HEADER LYASE 19-OCT-09 3KAO TITLE CRYSTAL STRUCTURE OF TAGATOSE 1,6-DIPHOSPHATE ALDOLASE FROM TITLE 2 STAPHYLOCOCCUS AUREUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TAGATOSE 1,6-DIPHOSPHATE ALDOLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TAGATOSE-BISPHOSPHATE ALDOLASE, D-TAGATOSE-1,6-BISPHOSPHATE COMPND 5 ALDOLASE; COMPND 6 EC: 4.1.2.40; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS MU50; SOURCE 3 ORGANISM_TAXID: 158878; SOURCE 4 STRAIN: MU50 / ATCC 700699; SOURCE 5 GENE: LACD, SAV2192, STAPHYLOCOCCUS AUREUS SUBSP. AUREUS MU50; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG19 KEYWDS TAGATOSE 1, 6-DIPHOSPHATE ALDOLASE, STRUCTURAL GENOMICS, PSI-2, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, MCSG, LACTOSE METABOLISM, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,N.MARSHALL,G.COBB,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 3 01-NOV-17 3KAO 1 REMARK REVDAT 2 13-JUL-11 3KAO 1 VERSN REVDAT 1 27-OCT-09 3KAO 0 JRNL AUTH C.CHANG,N.MARSHALL,G.COBB,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF TAGATOSE 1,6-DIPHOSPHATE ALDOLASE FROM JRNL TITL 2 STAPHYLOCOCCUS AUREUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 58917 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.171 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2984 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4057 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.1930 REMARK 3 BIN FREE R VALUE SET COUNT : 205 REMARK 3 BIN FREE R VALUE : 0.2330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2569 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 402 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 24.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.24000 REMARK 3 B22 (A**2) : -0.24000 REMARK 3 B33 (A**2) : 0.48000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.078 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.079 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.046 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.355 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2861 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3895 ; 1.224 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 368 ; 5.532 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 141 ;36.368 ;25.532 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 509 ;13.467 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;12.959 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 417 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2223 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1753 ; 0.590 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2841 ; 1.097 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1108 ; 2.145 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1054 ; 3.595 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 90 REMARK 3 ORIGIN FOR THE GROUP (A): 23.8566 28.0802 77.9065 REMARK 3 T TENSOR REMARK 3 T11: 0.1262 T22: 0.0165 REMARK 3 T33: 0.0189 T12: 0.0064 REMARK 3 T13: -0.0345 T23: -0.0020 REMARK 3 L TENSOR REMARK 3 L11: 0.6629 L22: 1.4534 REMARK 3 L33: 0.6739 L12: 0.2941 REMARK 3 L13: 0.2751 L23: 0.4810 REMARK 3 S TENSOR REMARK 3 S11: 0.0083 S12: 0.0938 S13: -0.0235 REMARK 3 S21: -0.1914 S22: -0.0105 S23: 0.0256 REMARK 3 S31: -0.0036 S32: 0.0441 S33: 0.0022 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 91 A 200 REMARK 3 ORIGIN FOR THE GROUP (A): 15.6270 31.1150 95.4539 REMARK 3 T TENSOR REMARK 3 T11: 0.0287 T22: 0.0408 REMARK 3 T33: 0.0469 T12: -0.0045 REMARK 3 T13: -0.0281 T23: 0.0215 REMARK 3 L TENSOR REMARK 3 L11: 1.1644 L22: 1.0557 REMARK 3 L33: 1.0813 L12: -0.1811 REMARK 3 L13: 0.1727 L23: -0.3606 REMARK 3 S TENSOR REMARK 3 S11: -0.0228 S12: -0.0514 S13: -0.0261 REMARK 3 S21: -0.0601 S22: 0.0925 S23: 0.1807 REMARK 3 S31: 0.0212 S32: -0.1864 S33: -0.0697 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 201 A 326 REMARK 3 ORIGIN FOR THE GROUP (A): 12.3143 40.4323 77.1259 REMARK 3 T TENSOR REMARK 3 T11: 0.1354 T22: 0.0425 REMARK 3 T33: 0.0917 T12: 0.0049 REMARK 3 T13: -0.0849 T23: 0.0367 REMARK 3 L TENSOR REMARK 3 L11: 0.8166 L22: 1.3600 REMARK 3 L33: 0.7225 L12: -0.1549 REMARK 3 L13: 0.0235 L23: 0.0677 REMARK 3 S TENSOR REMARK 3 S11: -0.0076 S12: 0.0634 S13: 0.0598 REMARK 3 S21: -0.2588 S22: 0.0477 S23: 0.2108 REMARK 3 S31: -0.1339 S32: -0.1201 S33: -0.0401 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3KAO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000055757. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97931 REMARK 200 MONOCHROMATOR : SI(111)DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59016 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.10 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 54.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.80 REMARK 200 R MERGE FOR SHELL (I) : 0.48400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.430 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, SHELXD, MLPHARE, DM, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MM ZINC SULFATE, 100 MM MES PH 6.5, REMARK 280 12.5 % PEG550 MME, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 101.37950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 42.35200 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 42.35200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 152.06925 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 42.35200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 42.35200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 50.68975 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 42.35200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.35200 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 152.06925 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 42.35200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.35200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 50.68975 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 101.37950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -280.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 202.75900 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 342 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MSE A 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 2 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 326 O HOH A 408 1.80 REMARK 500 NE2 GLN A 324 O HOH A 370 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 22 62.71 -107.57 REMARK 500 SER A 22 73.63 -105.88 REMARK 500 PHE A 26 52.92 -145.45 REMARK 500 ARG A 29 -83.64 -128.59 REMARK 500 THR A 302 -79.54 -116.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 330 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 39 ND1 REMARK 620 2 GLU A 290 OE2 109.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 331 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 163 OE2 REMARK 620 2 LYS A 205 NZ 100.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 329 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 265 NE2 REMARK 620 2 HOH A 385 O 90.1 REMARK 620 3 HOH A 386 O 97.1 163.7 REMARK 620 4 HOH A 387 O 111.2 75.3 88.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 327 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 328 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 329 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 330 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 331 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 332 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 333 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 334 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 335 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC63827 RELATED DB: TARGETDB DBREF 3KAO A 1 326 UNP P0A009 LACD_STAAM 1 326 SEQADV 3KAO SER A -2 UNP P0A009 EXPRESSION TAG SEQADV 3KAO ASN A -1 UNP P0A009 EXPRESSION TAG SEQADV 3KAO ALA A 0 UNP P0A009 EXPRESSION TAG SEQRES 1 A 329 SER ASN ALA MSE SER LYS SER ASN GLN LYS ILE ALA SER SEQRES 2 A 329 ILE GLU GLN LEU SER ASN ASN GLU GLY ILE ILE SER ALA SEQRES 3 A 329 LEU ALA PHE ASP GLN ARG GLY ALA LEU LYS ARG MSE MSE SEQRES 4 A 329 ALA LYS HIS GLN THR GLU GLU PRO THR VAL ALA GLN ILE SEQRES 5 A 329 GLU GLN LEU LYS VAL LEU VAL ALA GLU GLU LEU THR GLN SEQRES 6 A 329 TYR ALA SER SER ILE LEU LEU ASP PRO GLU TYR GLY LEU SEQRES 7 A 329 PRO ALA SER ASP ALA ARG ASN LYS ASP CYS GLY LEU LEU SEQRES 8 A 329 LEU ALA TYR GLU LYS THR GLY TYR ASP VAL ASN ALA LYS SEQRES 9 A 329 GLY ARG LEU PRO ASP CYS LEU VAL GLU TRP SER ALA LYS SEQRES 10 A 329 ARG LEU LYS GLU GLN GLY ALA ASN ALA VAL LYS PHE LEU SEQRES 11 A 329 LEU TYR TYR ASP VAL ASP ASP ALA GLU GLU ILE ASN ILE SEQRES 12 A 329 GLN LYS LYS ALA TYR ILE GLU ARG ILE GLY SER GLU CYS SEQRES 13 A 329 VAL ALA GLU ASP ILE PRO PHE PHE LEU GLU VAL LEU THR SEQRES 14 A 329 TYR ASP ASP ASN ILE PRO ASP ASN GLY SER VAL GLU PHE SEQRES 15 A 329 ALA LYS VAL LYS PRO ARG LYS VAL ASN GLU ALA MSE LYS SEQRES 16 A 329 LEU PHE SER GLU PRO ARG PHE ASN VAL ASP VAL LEU LYS SEQRES 17 A 329 VAL GLU VAL PRO VAL ASN MSE LYS TYR VAL GLU GLY PHE SEQRES 18 A 329 ALA GLU GLY GLU VAL VAL TYR THR LYS GLU GLU ALA ALA SEQRES 19 A 329 GLN HIS PHE LYS ASP GLN ASP ALA ALA THR HIS LEU PRO SEQRES 20 A 329 TYR ILE TYR LEU SER ALA GLY VAL SER ALA GLU LEU PHE SEQRES 21 A 329 GLN GLU THR LEU LYS PHE ALA HIS GLU ALA GLY ALA LYS SEQRES 22 A 329 PHE ASN GLY VAL LEU CYS GLY ARG ALA THR TRP SER GLY SEQRES 23 A 329 ALA VAL GLN VAL TYR ILE GLU GLN GLY GLU ASP ALA ALA SEQRES 24 A 329 ARG GLU TRP LEU ARG THR THR GLY PHE LYS ASN ILE ASP SEQRES 25 A 329 ASP LEU ASN LYS VAL LEU LYS ASP THR ALA THR SER TRP SEQRES 26 A 329 LYS GLN ARG LYS MODRES 3KAO MSE A 35 MET SELENOMETHIONINE MODRES 3KAO MSE A 36 MET SELENOMETHIONINE MODRES 3KAO MSE A 191 MET SELENOMETHIONINE MODRES 3KAO MSE A 212 MET SELENOMETHIONINE HET MSE A 35 8 HET MSE A 36 8 HET MSE A 191 8 HET MSE A 212 8 HET SO4 A 327 5 HET SO4 A 328 5 HET ZN A 329 1 HET ZN A 330 1 HET ZN A 331 1 HET GOL A 332 6 HET SO4 A 333 5 HET GOL A 334 12 HET GOL A 335 6 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 SO4 3(O4 S 2-) FORMUL 4 ZN 3(ZN 2+) FORMUL 7 GOL 3(C3 H8 O3) FORMUL 11 HOH *402(H2 O) HELIX 1 1 SER A 4 SER A 15 1 12 HELIX 2 2 ARG A 29 LYS A 38 1 10 HELIX 3 3 THR A 45 THR A 61 1 17 HELIX 4 4 GLN A 62 ALA A 64 5 3 HELIX 5 5 GLY A 74 ALA A 80 1 7 HELIX 6 6 SER A 112 GLN A 119 1 8 HELIX 7 7 ALA A 135 ASP A 157 1 23 HELIX 8 8 SER A 176 SER A 195 1 20 HELIX 9 9 GLU A 196 ASN A 200 5 5 HELIX 10 10 ASN A 211 VAL A 215 5 5 HELIX 11 11 THR A 226 ALA A 240 1 15 HELIX 12 12 SER A 253 GLY A 268 1 16 HELIX 13 13 GLY A 277 SER A 282 1 6 HELIX 14 14 GLY A 283 GLN A 291 1 9 HELIX 15 15 GLY A 292 THR A 302 1 11 HELIX 16 16 THR A 302 ALA A 319 1 18 SHEET 1 A 9 ILE A 21 PHE A 26 0 SHEET 2 A 9 SER A 66 LEU A 69 1 O LEU A 68 N PHE A 26 SHEET 3 A 9 GLY A 86 ALA A 90 1 O LEU A 88 N ILE A 67 SHEET 4 A 9 ALA A 123 TYR A 130 1 O LYS A 125 N LEU A 89 SHEET 5 A 9 PHE A 160 THR A 166 1 O PHE A 161 N VAL A 124 SHEET 6 A 9 VAL A 203 VAL A 206 1 O LYS A 205 N LEU A 162 SHEET 7 A 9 TYR A 245 LEU A 248 1 O ILE A 246 N VAL A 206 SHEET 8 A 9 GLY A 273 CYS A 276 1 O LEU A 275 N TYR A 247 SHEET 9 A 9 ILE A 21 PHE A 26 1 N ILE A 21 O VAL A 274 LINK C ARG A 34 N MSE A 35 1555 1555 1.34 LINK C MSE A 35 N MSE A 36 1555 1555 1.33 LINK C MSE A 36 N ALA A 37 1555 1555 1.34 LINK C ALA A 190 N MSE A 191 1555 1555 1.34 LINK C MSE A 191 N LYS A 192 1555 1555 1.33 LINK C ASN A 211 N MSE A 212 1555 1555 1.34 LINK C MSE A 212 N LYS A 213 1555 1555 1.33 LINK ND1 HIS A 39 ZN ZN A 330 1555 1555 2.25 LINK OE2 GLU A 163 ZN ZN A 331 1555 1555 2.29 LINK NZ LYS A 205 ZN ZN A 331 1555 1555 2.38 LINK NE2 HIS A 265 ZN ZN A 329 1555 1555 2.09 LINK OE2 GLU A 290 ZN ZN A 330 1555 1555 2.01 LINK ZN ZN A 329 O HOH A 385 1555 1555 1.82 LINK ZN ZN A 329 O HOH A 386 1555 1555 1.88 LINK ZN ZN A 329 O HOH A 387 1555 1555 2.06 SITE 1 AC1 10 GLN A 28 ARG A 29 GLY A 30 ALA A 31 SITE 2 AC1 10 THR A 94 GLY A 95 HOH A 456 HOH A 509 SITE 3 AC1 10 HOH A 537 HOH A 689 SITE 1 AC2 7 GLN A 28 SER A 249 ALA A 250 LEU A 275 SITE 2 AC2 7 GLY A 277 ARG A 278 HOH A 383 SITE 1 AC3 5 GLU A 50 HIS A 265 HOH A 385 HOH A 386 SITE 2 AC3 5 HOH A 387 SITE 1 AC4 3 HIS A 39 GLN A 286 GLU A 290 SITE 1 AC5 2 GLU A 163 LYS A 205 SITE 1 AC6 11 LYS A 93 GLY A 95 TYR A 96 ARG A 103 SITE 2 AC6 11 LEU A 104 PRO A 105 ASP A 106 HOH A 413 SITE 3 AC6 11 HOH A 442 HOH A 494 HOH A 539 SITE 1 AC7 7 GLU A 72 LYS A 93 LEU A 108 VAL A 109 SITE 2 AC7 7 HOH A 453 HOH A 642 HOH A 685 SITE 1 AC8 8 SER A 2 LYS A 3 LYS A 7 VAL A 154 SITE 2 AC8 8 ASN A 200 VAL A 201 ASP A 202 HOH A 431 SITE 1 AC9 3 ASP A 106 HOH A 475 HOH A 518 CRYST1 84.704 84.704 202.759 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011806 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011806 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004932 0.00000