HEADER VIRAL PROTEIN/ENDOCYTOSIS 19-OCT-09 3KAS TITLE MACHUPO VIRUS GP1 BOUND TO HUMAN TRANSFERRIN RECEPTOR 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSFERRIN RECEPTOR PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 121-760; COMPND 5 SYNONYM: TFR1, TFR, TR, TRFR, T9, P90, TRANSFERRIN RECEPTOR PROTEIN COMPND 6 1, SERUM FORM, STFR; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: GLYCOPROTEIN; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: RESIDUES 83-244; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 5 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: MACHUPO VIRUS; SOURCE 9 ORGANISM_TAXID: 11628; SOURCE 10 STRAIN: CARVALLO; SOURCE 11 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 12 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PFASTBAC1 KEYWDS MACHUPO VIRUS, TRANSFERRIN RECEPTOR 1, ARENAVIRUS, CELL MEMBRANE, KEYWDS 2 DISULFIDE BOND, ENDOCYTOSIS, GLYCOPROTEIN, HOST-VIRUS INTERACTION, KEYWDS 3 RECEPTOR, SECRETED, TRANSMEMBRANE, VIRAL PROTEIN-ENDOCYTOSIS COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.ABRAHAM,K.D.CORBETT,S.C.HARRISON REVDAT 5 06-SEP-23 3KAS 1 HETSYN REVDAT 4 29-JUL-20 3KAS 1 COMPND REMARK SEQADV HETNAM REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 15-JUN-11 3KAS 1 REMARK REVDAT 2 11-AUG-10 3KAS 1 JRNL REVDAT 1 09-MAR-10 3KAS 0 JRNL AUTH J.ABRAHAM,K.D.CORBETT,M.FARZAN,H.CHOE,S.C.HARRISON JRNL TITL STRUCTURAL BASIS FOR RECEPTOR RECOGNITION BY NEW WORLD JRNL TITL 2 HEMORRHAGIC FEVER ARENAVIRUSES. JRNL REF NAT.STRUCT.MOL.BIOL. V. 17 438 2010 JRNL REFN ISSN 1545-9993 JRNL PMID 20208545 JRNL DOI 10.1038/NSMB.1772 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.4_162) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.13 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.7 REMARK 3 NUMBER OF REFLECTIONS : 42181 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 2084 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.1347 - 5.9085 1.00 3189 146 0.1866 0.2338 REMARK 3 2 5.9085 - 4.6940 1.00 3054 164 0.1494 0.1906 REMARK 3 3 4.6940 - 4.1019 1.00 3026 169 0.1334 0.1808 REMARK 3 4 4.1019 - 3.7274 1.00 3023 170 0.1549 0.2084 REMARK 3 5 3.7274 - 3.4605 1.00 3008 155 0.1763 0.2448 REMARK 3 6 3.4605 - 3.2567 1.00 3017 153 0.1843 0.2110 REMARK 3 7 3.2567 - 3.0937 1.00 2977 165 0.2091 0.2737 REMARK 3 8 3.0937 - 2.9591 1.00 3011 151 0.2184 0.2610 REMARK 3 9 2.9591 - 2.8453 1.00 2977 167 0.2270 0.2826 REMARK 3 10 2.8453 - 2.7472 1.00 2970 165 0.2396 0.2983 REMARK 3 11 2.7472 - 2.6613 0.95 2832 134 0.2605 0.3151 REMARK 3 12 2.6613 - 2.5853 0.81 2437 121 0.2737 0.3498 REMARK 3 13 2.5853 - 2.5172 0.68 2048 87 0.2664 0.2997 REMARK 3 14 2.5172 - 2.4558 0.52 1550 88 0.2674 0.3507 REMARK 3 15 2.4558 - 2.4000 0.33 978 49 0.2719 0.3408 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 38.51 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.300 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 48.24 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.95300 REMARK 3 B22 (A**2) : -2.83300 REMARK 3 B33 (A**2) : 3.78600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 6628 REMARK 3 ANGLE : 1.049 8990 REMARK 3 CHIRALITY : 0.164 1009 REMARK 3 PLANARITY : 0.004 1124 REMARK 3 DIHEDRAL : 21.726 2428 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): -56.6143 60.1216 19.5706 REMARK 3 T TENSOR REMARK 3 T11: 0.1504 T22: 0.1355 REMARK 3 T33: 0.1436 T12: 0.0273 REMARK 3 T13: 0.0393 T23: 0.0417 REMARK 3 L TENSOR REMARK 3 L11: 2.1924 L22: 1.1935 REMARK 3 L33: 1.0529 L12: -0.1287 REMARK 3 L13: 0.3044 L23: 0.7601 REMARK 3 S TENSOR REMARK 3 S11: 0.0537 S12: 0.1423 S13: 0.0014 REMARK 3 S21: 0.0555 S22: -0.0796 S23: 0.0158 REMARK 3 S31: 0.0613 S32: -0.0035 S33: 0.0091 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 121:188 OR RESID 383:760 OR RESID REMARK 3 1011) REMARK 3 ORIGIN FOR THE GROUP (A): -17.0217 18.0172 15.3102 REMARK 3 T TENSOR REMARK 3 T11: 0.1357 T22: 0.1166 REMARK 3 T33: 0.1211 T12: 0.0360 REMARK 3 T13: -0.0059 T23: -0.0281 REMARK 3 L TENSOR REMARK 3 L11: 0.9330 L22: 1.2273 REMARK 3 L33: 0.6898 L12: 0.2276 REMARK 3 L13: -0.2247 L23: -0.0866 REMARK 3 S TENSOR REMARK 3 S11: -0.0565 S12: 0.0285 S13: -0.1131 REMARK 3 S21: 0.1069 S22: 0.0590 S23: 0.0371 REMARK 3 S31: -0.0742 S32: -0.0157 S33: -0.0018 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 189:382 OR RESID 1001) REMARK 3 ORIGIN FOR THE GROUP (A): -30.8655 46.6028 17.5496 REMARK 3 T TENSOR REMARK 3 T11: 0.2081 T22: 0.2429 REMARK 3 T33: 0.2383 T12: 0.0606 REMARK 3 T13: 0.0477 T23: -0.0286 REMARK 3 L TENSOR REMARK 3 L11: 1.3420 L22: 0.8757 REMARK 3 L33: 0.6103 L12: -0.9987 REMARK 3 L13: 0.2985 L23: 0.3808 REMARK 3 S TENSOR REMARK 3 S11: 0.0785 S12: 0.2138 S13: 0.1019 REMARK 3 S21: 0.0015 S22: 0.0010 S23: -0.1182 REMARK 3 S31: -0.0317 S32: 0.0713 S33: -0.0637 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3KAS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000055760. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : SIDE-BOUNCE CRYOGENICALLY-COOLED REMARK 200 220 SILICON MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42215 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.7 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09900 REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.47 REMARK 200 COMPLETENESS FOR SHELL (%) : 36.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.76700 REMARK 200 R SYM FOR SHELL (I) : 0.76700 REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1CX8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M SODIUM POTASSIUM PHOSPHATE, 150 REMARK 280 MM NACL, PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.23550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.23550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 71.97550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 85.11400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 71.97550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 85.11400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 49.23550 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 71.97550 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 85.11400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 49.23550 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 71.97550 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 85.11400 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 49.23550 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 18 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 842 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 280 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A 316 REMARK 465 ASN A 317 REMARK 465 HIS A 318 REMARK 465 ASP A 757 REMARK 465 ASN A 758 REMARK 465 GLU A 759 REMARK 465 PHE A 760 REMARK 465 ASN B 83 REMARK 465 HIS B 84 REMARK 465 SER B 85 REMARK 465 VAL B 242 REMARK 465 ASN B 243 REMARK 465 THR B 244 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN B 137 C2 NAG B 1011 2.00 REMARK 500 C6 NAG C 1 C1 FUC C 3 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 222 10.02 87.80 REMARK 500 ASN A 236 -116.96 53.78 REMARK 500 LYS A 261 -56.85 67.83 REMARK 500 PRO A 289 59.26 -60.39 REMARK 500 ARG A 325 -124.48 78.94 REMARK 500 SER A 419 -42.87 -137.40 REMARK 500 LYS A 477 -52.30 -122.72 REMARK 500 ASN A 608 48.58 -78.58 REMARK 500 TYR A 628 23.78 -141.97 REMARK 500 GLU A 634 4.88 -64.07 REMARK 500 GLU B 87 -153.43 -85.03 REMARK 500 LEU B 94 -73.95 -88.47 REMARK 500 ASN B 95 -162.05 -128.98 REMARK 500 ASN B 174 105.27 -169.33 REMARK 500 LYS B 181 44.51 -71.26 REMARK 500 PHE B 226 -132.52 42.32 REMARK 500 TYR B 228 -5.33 -56.85 REMARK 500 HIS B 233 -77.59 -122.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WFO RELATED DB: PDB REMARK 900 STRUCTURE OF MACHUPO VIRUS GP1 REMARK 900 RELATED ID: 1CX8 RELATED DB: PDB REMARK 900 STRUCTURE OF HUMAN TRANSFERRIN RECEPTOR 1 DBREF 3KAS A 121 760 UNP P02786 TFR1_HUMAN 121 760 DBREF 3KAS B 83 244 UNP Q8AZ57 Q8AZ57_MACHU 83 244 SEQADV 3KAS SER A 142 UNP P02786 GLY 142 VARIANT SEQRES 1 A 640 ARG LEU TYR TRP ASP ASP LEU LYS ARG LYS LEU SER GLU SEQRES 2 A 640 LYS LEU ASP SER THR ASP PHE THR SER THR ILE LYS LEU SEQRES 3 A 640 LEU ASN GLU ASN SER TYR VAL PRO ARG GLU ALA GLY SER SEQRES 4 A 640 GLN LYS ASP GLU ASN LEU ALA LEU TYR VAL GLU ASN GLN SEQRES 5 A 640 PHE ARG GLU PHE LYS LEU SER LYS VAL TRP ARG ASP GLN SEQRES 6 A 640 HIS PHE VAL LYS ILE GLN VAL LYS ASP SER ALA GLN ASN SEQRES 7 A 640 SER VAL ILE ILE VAL ASP LYS ASN GLY ARG LEU VAL TYR SEQRES 8 A 640 LEU VAL GLU ASN PRO GLY GLY TYR VAL ALA TYR SER LYS SEQRES 9 A 640 ALA ALA THR VAL THR GLY LYS LEU VAL HIS ALA ASN PHE SEQRES 10 A 640 GLY THR LYS LYS ASP PHE GLU ASP LEU TYR THR PRO VAL SEQRES 11 A 640 ASN GLY SER ILE VAL ILE VAL ARG ALA GLY LYS ILE THR SEQRES 12 A 640 PHE ALA GLU LYS VAL ALA ASN ALA GLU SER LEU ASN ALA SEQRES 13 A 640 ILE GLY VAL LEU ILE TYR MET ASP GLN THR LYS PHE PRO SEQRES 14 A 640 ILE VAL ASN ALA GLU LEU SER PHE PHE GLY HIS ALA HIS SEQRES 15 A 640 LEU GLY THR GLY ASP PRO TYR THR PRO GLY PHE PRO SER SEQRES 16 A 640 PHE ASN HIS THR GLN PHE PRO PRO SER ARG SER SER GLY SEQRES 17 A 640 LEU PRO ASN ILE PRO VAL GLN THR ILE SER ARG ALA ALA SEQRES 18 A 640 ALA GLU LYS LEU PHE GLY ASN MET GLU GLY ASP CYS PRO SEQRES 19 A 640 SER ASP TRP LYS THR ASP SER THR CYS ARG MET VAL THR SEQRES 20 A 640 SER GLU SER LYS ASN VAL LYS LEU THR VAL SER ASN VAL SEQRES 21 A 640 LEU LYS GLU ILE LYS ILE LEU ASN ILE PHE GLY VAL ILE SEQRES 22 A 640 LYS GLY PHE VAL GLU PRO ASP HIS TYR VAL VAL VAL GLY SEQRES 23 A 640 ALA GLN ARG ASP ALA TRP GLY PRO GLY ALA ALA LYS SER SEQRES 24 A 640 GLY VAL GLY THR ALA LEU LEU LEU LYS LEU ALA GLN MET SEQRES 25 A 640 PHE SER ASP MET VAL LEU LYS ASP GLY PHE GLN PRO SER SEQRES 26 A 640 ARG SER ILE ILE PHE ALA SER TRP SER ALA GLY ASP PHE SEQRES 27 A 640 GLY SER VAL GLY ALA THR GLU TRP LEU GLU GLY TYR LEU SEQRES 28 A 640 SER SER LEU HIS LEU LYS ALA PHE THR TYR ILE ASN LEU SEQRES 29 A 640 ASP LYS ALA VAL LEU GLY THR SER ASN PHE LYS VAL SER SEQRES 30 A 640 ALA SER PRO LEU LEU TYR THR LEU ILE GLU LYS THR MET SEQRES 31 A 640 GLN ASN VAL LYS HIS PRO VAL THR GLY GLN PHE LEU TYR SEQRES 32 A 640 GLN ASP SER ASN TRP ALA SER LYS VAL GLU LYS LEU THR SEQRES 33 A 640 LEU ASP ASN ALA ALA PHE PRO PHE LEU ALA TYR SER GLY SEQRES 34 A 640 ILE PRO ALA VAL SER PHE CYS PHE CYS GLU ASP THR ASP SEQRES 35 A 640 TYR PRO TYR LEU GLY THR THR MET ASP THR TYR LYS GLU SEQRES 36 A 640 LEU ILE GLU ARG ILE PRO GLU LEU ASN LYS VAL ALA ARG SEQRES 37 A 640 ALA ALA ALA GLU VAL ALA GLY GLN PHE VAL ILE LYS LEU SEQRES 38 A 640 THR HIS ASP VAL GLU LEU ASN LEU ASP TYR GLU ARG TYR SEQRES 39 A 640 ASN SER GLN LEU LEU SER PHE VAL ARG ASP LEU ASN GLN SEQRES 40 A 640 TYR ARG ALA ASP ILE LYS GLU MET GLY LEU SER LEU GLN SEQRES 41 A 640 TRP LEU TYR SER ALA ARG GLY ASP PHE PHE ARG ALA THR SEQRES 42 A 640 SER ARG LEU THR THR ASP PHE GLY ASN ALA GLU LYS THR SEQRES 43 A 640 ASP ARG PHE VAL MET LYS LYS LEU ASN ASP ARG VAL MET SEQRES 44 A 640 ARG VAL GLU TYR HIS PHE LEU SER PRO TYR VAL SER PRO SEQRES 45 A 640 LYS GLU SER PRO PHE ARG HIS VAL PHE TRP GLY SER GLY SEQRES 46 A 640 SER HIS THR LEU PRO ALA LEU LEU GLU ASN LEU LYS LEU SEQRES 47 A 640 ARG LYS GLN ASN ASN GLY ALA PHE ASN GLU THR LEU PHE SEQRES 48 A 640 ARG ASN GLN LEU ALA LEU ALA THR TRP THR ILE GLN GLY SEQRES 49 A 640 ALA ALA ASN ALA LEU SER GLY ASP VAL TRP ASP ILE ASP SEQRES 50 A 640 ASN GLU PHE SEQRES 1 B 162 ASN HIS SER ASN GLU LEU PRO SER LEU CYS MET LEU ASN SEQRES 2 B 162 ASN SER PHE TYR TYR MET ARG GLY GLY VAL ASN THR PHE SEQRES 3 B 162 LEU ILE ARG VAL SER ASP ILE SER VAL LEU MET LYS GLU SEQRES 4 B 162 TYR ASP VAL SER ILE TYR GLU PRO GLU ASP LEU GLY ASN SEQRES 5 B 162 CYS LEU ASN LYS SER ASP SER SER TRP ALA ILE HIS TRP SEQRES 6 B 162 PHE SER ASN ALA LEU GLY HIS ASP TRP LEU MET ASP PRO SEQRES 7 B 162 PRO MET LEU CYS ARG ASN LYS THR LYS LYS GLU GLY SER SEQRES 8 B 162 ASN ILE GLN PHE ASN ILE SER LYS ALA ASP ASP ALA ARG SEQRES 9 B 162 VAL TYR GLY LYS LYS ILE ARG ASN GLY MET ARG HIS LEU SEQRES 10 B 162 PHE ARG GLY PHE HIS ASP PRO CYS GLU GLU GLY LYS VAL SEQRES 11 B 162 CYS TYR LEU THR ILE ASN GLN CYS GLY ASP PRO SER SER SEQRES 12 B 162 PHE ASP TYR CYS GLY VAL ASN HIS LEU SER LYS CYS GLN SEQRES 13 B 162 PHE ASP HIS VAL ASN THR MODRES 3KAS ASN B 178 ASN GLYCOSYLATION SITE MODRES 3KAS ASN A 727 ASN GLYCOSYLATION SITE MODRES 3KAS ASN B 137 ASN GLYCOSYLATION SITE MODRES 3KAS ASN A 251 ASN GLYCOSYLATION SITE MODRES 3KAS ASN B 95 ASN GLYCOSYLATION SITE MODRES 3KAS ASN B 166 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET FUC C 3 10 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET MAN D 4 11 HET MAN D 5 11 HET MAN D 6 11 HET MAN D 7 11 HET NAG A1001 14 HET NAG A1011 14 HET PO4 A 2 5 HET PO4 A 3 5 HET PO4 A 4 5 HET PO4 A 6 5 HET K A 1 1 HET NAG B1001 14 HET NAG B1011 14 HET PO4 B 1 5 HET PO4 B 5 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM PO4 PHOSPHATE ION HETNAM K POTASSIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 3 NAG 8(C8 H15 N O6) FORMUL 3 FUC C6 H12 O5 FORMUL 4 BMA C6 H12 O6 FORMUL 4 MAN 4(C6 H12 O6) FORMUL 7 PO4 6(O4 P 3-) FORMUL 11 K K 1+ FORMUL 16 HOH *250(H2 O) HELIX 1 1 TYR A 123 SER A 137 1 15 HELIX 2 2 ASP A 139 LEU A 147 1 9 HELIX 3 3 SER A 159 LYS A 177 1 19 HELIX 4 4 THR A 239 ASP A 245 1 7 HELIX 5 5 THR A 263 SER A 273 1 11 HELIX 6 6 SER A 338 GLY A 347 1 10 HELIX 7 7 PRO A 354 LYS A 358 5 5 HELIX 8 8 SER A 419 LYS A 439 1 21 HELIX 9 9 ALA A 455 GLY A 459 5 5 HELIX 10 10 SER A 460 TYR A 470 1 11 HELIX 11 11 SER A 473 LEU A 476 5 4 HELIX 12 12 LEU A 502 GLN A 511 1 10 HELIX 13 13 ASN A 527 VAL A 532 5 6 HELIX 14 14 ALA A 540 TYR A 547 1 8 HELIX 15 15 THR A 572 ILE A 580 1 9 HELIX 16 16 GLU A 582 ASP A 604 1 23 HELIX 17 17 GLU A 612 ASN A 626 1 15 HELIX 18 18 GLN A 627 ARG A 629 5 3 HELIX 19 19 LEU A 639 ALA A 663 1 25 HELIX 20 20 ASP A 667 VAL A 681 1 15 HELIX 21 21 GLU A 682 LEU A 686 5 5 HELIX 22 22 THR A 708 LEU A 718 1 11 HELIX 23 23 ASN A 727 SER A 750 1 24 HELIX 24 24 GLU B 128 LEU B 136 5 9 HELIX 25 25 LYS B 138 ASP B 140 5 3 HELIX 26 26 SER B 141 GLY B 153 1 13 HELIX 27 27 ALA B 182 ASP B 184 5 3 HELIX 28 28 ALA B 185 PHE B 200 1 16 HELIX 29 29 ASP B 222 PHE B 226 5 5 HELIX 30 30 HIS B 233 CYS B 237 5 5 SHEET 1 A 7 LYS A 180 VAL A 192 0 SHEET 2 A 7 VAL A 380 ILE A 393 -1 O VAL A 380 N VAL A 192 SHEET 3 A 7 ARG A 446 TRP A 453 -1 O SER A 452 N ILE A 389 SHEET 4 A 7 GLU A 398 GLN A 408 1 N VAL A 405 O ILE A 449 SHEET 5 A 7 ALA A 478 ASN A 483 1 O ILE A 482 N VAL A 404 SHEET 6 A 7 ALA A 552 CYS A 558 1 O VAL A 553 N ASN A 483 SHEET 7 A 7 ASN A 493 ALA A 498 -1 N ASN A 493 O CYS A 558 SHEET 1 B 4 LEU A 209 GLU A 214 0 SHEET 2 B 4 SER A 199 ASP A 204 -1 N VAL A 200 O VAL A 213 SHEET 3 B 4 LYS A 371 VAL A 377 -1 O LYS A 374 N ILE A 201 SHEET 4 B 4 ALA A 226 GLY A 230 -1 N VAL A 228 O LEU A 375 SHEET 1 C 2 VAL A 220 ALA A 221 0 SHEET 2 C 2 GLY A 299 HIS A 300 1 O GLY A 299 N ALA A 221 SHEET 1 D 4 LEU A 232 HIS A 234 0 SHEET 2 D 4 ILE A 254 ARG A 258 1 O ILE A 256 N VAL A 233 SHEET 3 D 4 GLY A 278 TYR A 282 1 O LEU A 280 N VAL A 255 SHEET 4 D 4 VAL A 334 THR A 336 1 O GLN A 335 N VAL A 279 SHEET 1 E 2 MET A 349 ASP A 352 0 SHEET 2 E 2 ARG A 364 THR A 367 -1 O VAL A 366 N GLU A 350 SHEET 1 F 7 SER B 90 ASN B 95 0 SHEET 2 F 7 PHE B 98 GLY B 103 -1 O ARG B 102 N SER B 90 SHEET 3 F 7 ASN B 106 SER B 113 -1 O ILE B 110 N TYR B 99 SHEET 4 F 7 TYR B 214 GLN B 219 -1 O TYR B 214 N SER B 113 SHEET 5 F 7 ILE B 175 ASN B 178 -1 N PHE B 177 O LEU B 215 SHEET 6 F 7 MET B 162 CYS B 164 -1 N LEU B 163 O GLN B 176 SHEET 7 F 7 VAL B 124 ILE B 126 -1 N ILE B 126 O MET B 162 SSBOND 1 CYS A 353 CYS A 363 1555 1555 2.04 SSBOND 2 CYS B 92 CYS B 237 1555 1555 2.03 SSBOND 3 CYS B 135 CYS B 164 1555 1555 2.02 SSBOND 4 CYS B 207 CYS B 213 1555 1555 2.05 SSBOND 5 CYS B 220 CYS B 229 1555 1555 2.03 LINK ND2 ASN A 251 C1 NAG A1001 1555 1555 1.45 LINK ND2 ASN A 727 C1 NAG A1011 1555 1555 1.44 LINK ND2 ASN B 95 C1 NAG B1001 1555 1555 1.47 LINK ND2 ASN B 137 C1 NAG B1011 1555 1555 1.44 LINK ND2 ASN B 166 C1 NAG C 1 1555 1555 1.47 LINK ND2 ASN B 178 C1 NAG D 1 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 LINK O6 NAG C 1 C1 FUC C 3 1555 1555 1.38 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.43 LINK O6 BMA D 3 C1 MAN D 4 1555 1555 1.45 LINK O3 BMA D 3 C1 MAN D 7 1555 1555 1.44 LINK O3 MAN D 4 C1 MAN D 5 1555 1555 1.44 LINK O6 MAN D 4 C1 MAN D 6 1555 1555 1.47 CISPEP 1 GLU B 171 GLY B 172 0 -19.53 CRYST1 143.951 170.228 98.471 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006947 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005874 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010155 0.00000