data_3KBF # _entry.id 3KBF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3KBF RCSB RCSB055781 WWPDB D_1000055781 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3KBE _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3KBF _pdbx_database_status.recvd_initial_deposition_date 2009-10-20 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Pakhomova, O.N.' 1 'Taylor, A.B.' 2 'Schuermann, J.P.' 3 'Culotta, V.L.' 4 'Hart, P.J.' 5 # _citation.id primary _citation.title 'X-ray Crystal Structure of C. elegans Cu,Zn Superoxide Dismutase' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Pakhomova, O.N.' 1 primary 'Taylor, A.B.' 2 primary 'Schuermann, J.P.' 3 primary 'Culotta, V.L.' 4 primary 'Hart, P.J.' 5 # _cell.entry_id 3KBF _cell.length_a 39.204 _cell.length_b 68.986 _cell.length_c 110.488 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3KBF _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Superoxide dismutase [Cu-Zn]' 16126.957 1 1.15.1.1 ? ? ? 2 non-polymer syn 'COPPER (II) ION' 63.546 1 ? ? ? ? 3 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? 4 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 5 water nat water 18.015 221 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SNRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPHFNPFGKTHGGPKSEIRHV GDLGNVEAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAGQDDLGEGVGDKAEESKKTGNAGARAACGVIALAAPQ ; _entity_poly.pdbx_seq_one_letter_code_can ;SNRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPHFNPFGKTHGGPKSEIRHV GDLGNVEAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAGQDDLGEGVGDKAEESKKTGNAGARAACGVIALAAPQ ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ARG n 1 4 ALA n 1 5 VAL n 1 6 ALA n 1 7 VAL n 1 8 LEU n 1 9 ARG n 1 10 GLY n 1 11 GLU n 1 12 THR n 1 13 VAL n 1 14 THR n 1 15 GLY n 1 16 THR n 1 17 ILE n 1 18 TRP n 1 19 ILE n 1 20 THR n 1 21 GLN n 1 22 LYS n 1 23 SER n 1 24 GLU n 1 25 ASN n 1 26 ASP n 1 27 GLN n 1 28 ALA n 1 29 VAL n 1 30 ILE n 1 31 GLU n 1 32 GLY n 1 33 GLU n 1 34 ILE n 1 35 LYS n 1 36 GLY n 1 37 LEU n 1 38 THR n 1 39 PRO n 1 40 GLY n 1 41 LEU n 1 42 HIS n 1 43 GLY n 1 44 PHE n 1 45 HIS n 1 46 VAL n 1 47 HIS n 1 48 GLN n 1 49 TYR n 1 50 GLY n 1 51 ASP n 1 52 SER n 1 53 THR n 1 54 ASN n 1 55 GLY n 1 56 CYS n 1 57 ILE n 1 58 SER n 1 59 ALA n 1 60 GLY n 1 61 PRO n 1 62 HIS n 1 63 PHE n 1 64 ASN n 1 65 PRO n 1 66 PHE n 1 67 GLY n 1 68 LYS n 1 69 THR n 1 70 HIS n 1 71 GLY n 1 72 GLY n 1 73 PRO n 1 74 LYS n 1 75 SER n 1 76 GLU n 1 77 ILE n 1 78 ARG n 1 79 HIS n 1 80 VAL n 1 81 GLY n 1 82 ASP n 1 83 LEU n 1 84 GLY n 1 85 ASN n 1 86 VAL n 1 87 GLU n 1 88 ALA n 1 89 GLY n 1 90 ALA n 1 91 ASP n 1 92 GLY n 1 93 VAL n 1 94 ALA n 1 95 LYS n 1 96 ILE n 1 97 LYS n 1 98 LEU n 1 99 THR n 1 100 ASP n 1 101 THR n 1 102 LEU n 1 103 VAL n 1 104 THR n 1 105 LEU n 1 106 TYR n 1 107 GLY n 1 108 PRO n 1 109 ASN n 1 110 THR n 1 111 VAL n 1 112 VAL n 1 113 GLY n 1 114 ARG n 1 115 SER n 1 116 MET n 1 117 VAL n 1 118 VAL n 1 119 HIS n 1 120 ALA n 1 121 GLY n 1 122 GLN n 1 123 ASP n 1 124 ASP n 1 125 LEU n 1 126 GLY n 1 127 GLU n 1 128 GLY n 1 129 VAL n 1 130 GLY n 1 131 ASP n 1 132 LYS n 1 133 ALA n 1 134 GLU n 1 135 GLU n 1 136 SER n 1 137 LYS n 1 138 LYS n 1 139 THR n 1 140 GLY n 1 141 ASN n 1 142 ALA n 1 143 GLY n 1 144 ALA n 1 145 ARG n 1 146 ALA n 1 147 ALA n 1 148 CYS n 1 149 GLY n 1 150 VAL n 1 151 ILE n 1 152 ALA n 1 153 LEU n 1 154 ALA n 1 155 ALA n 1 156 PRO n 1 157 GLN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name nematode _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'C15F1.7, sod-1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Caenorhabditis elegans' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 6239 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pAED4 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SODC_CAEEL _struct_ref.pdbx_db_accession P34697 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SNRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPHFNPFGKTHGGPKSEIRHV GDLGNVEAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAGQDDLGEGVGDKAEESKKTGNAGARAACGVIALAAPQ ; _struct_ref.pdbx_align_begin 24 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3KBF _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 157 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P34697 _struct_ref_seq.db_align_beg 24 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 180 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 157 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CU non-polymer . 'COPPER (II) ION' ? 'Cu 2' 63.546 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 3KBF _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.32 _exptl_crystal.density_percent_sol 46.89 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.9 _exptl_crystal_grow.pdbx_details '100 mM MES, 65% MPD, pH 6.9, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2007-02-12 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 5.0.1' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 5.0.1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0000 # _reflns.entry_id 3KBF _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 1.3 _reflns.number_obs 36429 _reflns.number_all ? _reflns.percent_possible_obs 97.6 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.055 _reflns.pdbx_netI_over_sigmaI 35.4 _reflns.B_iso_Wilson_estimate 13.2 _reflns.pdbx_redundancy 11.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.30 _reflns_shell.d_res_low 1.35 _reflns_shell.percent_possible_all 81.8 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.364 _reflns_shell.meanI_over_sigI_obs 3.6 _reflns_shell.pdbx_redundancy 5.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2989 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3KBF _refine.ls_number_reflns_obs 36365 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 32.926 _refine.ls_d_res_high 1.3 _refine.ls_percent_reflns_obs 97.36 _refine.ls_R_factor_obs 0.1473 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1466 _refine.ls_R_factor_R_free 0.1592 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.03 _refine.ls_number_reflns_R_free 1828 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 20.4 _refine.aniso_B[1][1] 2.3026 _refine.aniso_B[2][2] -3.1506 _refine.aniso_B[3][3] 0.8480 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.356 _refine.solvent_model_param_bsol 39.296 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model anisotropic _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.13 _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1123 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 7 _refine_hist.number_atoms_solvent 221 _refine_hist.number_atoms_total 1351 _refine_hist.d_res_high 1.3 _refine_hist.d_res_low 32.926 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.006 ? ? 1171 'X-RAY DIFFRACTION' ? f_angle_d 1.014 ? ? 1592 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 15.047 ? ? 419 'X-RAY DIFFRACTION' ? f_chiral_restr 0.066 ? ? 182 'X-RAY DIFFRACTION' ? f_plane_restr 0.004 ? ? 211 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 1.3 1.3346 2051 0.1779 76.00 0.2208 . . 108 . . . . 'X-RAY DIFFRACTION' . 1.3346 1.3739 2521 0.1537 93.00 0.1715 . . 112 . . . . 'X-RAY DIFFRACTION' . 1.3739 1.4182 2641 0.1278 98.00 0.1802 . . 151 . . . . 'X-RAY DIFFRACTION' . 1.4182 1.4689 2691 0.1182 99.00 0.1654 . . 130 . . . . 'X-RAY DIFFRACTION' . 1.4689 1.5277 2712 0.1138 100.00 0.1567 . . 131 . . . . 'X-RAY DIFFRACTION' . 1.5277 1.5972 2688 0.1089 100.00 0.1385 . . 132 . . . . 'X-RAY DIFFRACTION' . 1.5972 1.6815 2689 0.1149 100.00 0.1401 . . 151 . . . . 'X-RAY DIFFRACTION' . 1.6815 1.7868 2720 0.1113 100.00 0.1271 . . 162 . . . . 'X-RAY DIFFRACTION' . 1.7868 1.9247 2690 0.1091 100.00 0.1271 . . 152 . . . . 'X-RAY DIFFRACTION' . 1.9247 2.1184 2728 0.1208 100.00 0.1318 . . 148 . . . . 'X-RAY DIFFRACTION' . 2.1184 2.4249 2765 0.1369 100.00 0.1730 . . 131 . . . . 'X-RAY DIFFRACTION' . 2.4249 3.0547 2782 0.1623 100.00 0.1702 . . 150 . . . . 'X-RAY DIFFRACTION' . 3.0547 32.9364 2859 0.1645 100.00 0.1545 . . 170 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 3KBF _struct.title 'C. elegans Cu,Zn Superoxide Dismutase' _struct.pdbx_descriptor 'Superoxide dismutase [Cu-Zn] (E.C.1.15.1.1)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3KBF _struct_keywords.pdbx_keywords OXIDOREDUCTASE _struct_keywords.text 'cu-zn superoxide dismutase, antioxidant, oxidoreductase, nematode, Disulfide bond, Metal-binding' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 CYS A 56 ? GLY A 60 ? CYS A 56 GLY A 60 5 ? 5 HELX_P HELX_P2 2 VAL A 129 ? ASP A 131 ? VAL A 129 ASP A 131 5 ? 3 HELX_P HELX_P3 3 LYS A 132 ? GLY A 140 ? LYS A 132 GLY A 140 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 56 SG ? ? ? 1_555 A CYS 148 SG ? ? A CYS 56 A CYS 148 1_555 ? ? ? ? ? ? ? 2.095 ? metalc1 metalc ? ? A HIS 45 ND1 ? ? ? 1_555 B CU . CU A ? A HIS 45 A CU 158 1_555 ? ? ? ? ? ? ? 2.067 ? metalc2 metalc ? ? A HIS 47 NE2 ? ? ? 1_555 B CU . CU A ? A HIS 47 A CU 158 1_555 ? ? ? ? ? ? ? 2.044 ? metalc3 metalc ? ? A HIS 47 NE2 ? ? ? 1_555 B CU . CU B ? A HIS 47 A CU 158 1_555 ? ? ? ? ? ? ? 2.171 ? metalc4 metalc ? ? A HIS 62 ND1 ? ? ? 1_555 C ZN . ZN ? ? A HIS 62 A ZN 159 1_555 ? ? ? ? ? ? ? 2.062 ? metalc5 metalc ? ? A HIS 70 ND1 ? ? ? 1_555 C ZN . ZN ? ? A HIS 70 A ZN 159 1_555 ? ? ? ? ? ? ? 2.091 ? metalc6 metalc ? ? A HIS 79 ND1 ? ? ? 1_555 C ZN . ZN ? ? A HIS 79 A ZN 159 1_555 ? ? ? ? ? ? ? 2.052 ? metalc7 metalc ? ? A ASP 82 OD1 ? ? ? 1_555 C ZN . ZN ? ? A ASP 82 A ZN 159 1_555 ? ? ? ? ? ? ? 1.978 ? metalc8 metalc ? ? A HIS 119 NE2 ? ? ? 1_555 B CU . CU A ? A HIS 119 A CU 158 1_555 ? ? ? ? ? ? ? 2.110 ? metalc9 metalc ? ? A HIS 119 NE2 ? ? ? 1_555 B CU . CU B ? A HIS 119 A CU 158 1_555 ? ? ? ? ? ? ? 2.021 ? metalc10 metalc ? ? B CU . CU B ? ? 1_555 D SO4 . O3 ? ? A CU 158 A SO4 160 1_555 ? ? ? ? ? ? ? 2.192 ? metalc11 metalc ? ? A HIS 45 ND1 ? ? ? 1_555 B CU . CU B ? A HIS 45 A CU 158 1_555 ? ? ? ? ? ? ? 2.440 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 9 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel A 8 9 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ASN A 2 ? LEU A 8 ? ASN A 2 LEU A 8 A 2 THR A 14 ? GLN A 21 ? THR A 14 GLN A 21 A 3 ALA A 28 ? LYS A 35 ? ALA A 28 LYS A 35 A 4 ALA A 94 ? ASP A 100 ? ALA A 94 ASP A 100 A 5 ASP A 82 ? ALA A 88 ? ASP A 82 ALA A 88 A 6 GLY A 40 ? HIS A 47 ? GLY A 40 HIS A 47 A 7 SER A 115 ? HIS A 119 ? SER A 115 HIS A 119 A 8 ARG A 145 ? ALA A 154 ? ARG A 145 ALA A 154 A 9 ASN A 2 ? LEU A 8 ? ASN A 2 LEU A 8 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ALA A 4 ? N ALA A 4 O ILE A 19 ? O ILE A 19 A 2 3 N TRP A 18 ? N TRP A 18 O GLU A 31 ? O GLU A 31 A 3 4 N ILE A 30 ? N ILE A 30 O LEU A 98 ? O LEU A 98 A 4 5 O LYS A 95 ? O LYS A 95 N GLU A 87 ? N GLU A 87 A 5 6 O ALA A 88 ? O ALA A 88 N GLY A 40 ? N GLY A 40 A 6 7 N GLY A 43 ? N GLY A 43 O HIS A 119 ? O HIS A 119 A 7 8 N MET A 116 ? N MET A 116 O GLY A 149 ? O GLY A 149 A 8 9 O ALA A 152 ? O ALA A 152 N VAL A 5 ? N VAL A 5 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE CU A 158' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN A 159' AC3 Software ? ? ? ? 10 'BINDING SITE FOR RESIDUE SO4 A 160' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HIS A 45 ? HIS A 45 . ? 1_555 ? 2 AC1 6 HIS A 47 ? HIS A 47 . ? 1_555 ? 3 AC1 6 HIS A 62 ? HIS A 62 . ? 1_555 ? 4 AC1 6 HIS A 119 ? HIS A 119 . ? 1_555 ? 5 AC1 6 SO4 D . ? SO4 A 160 . ? 1_555 ? 6 AC1 6 HOH E . ? HOH A 304 . ? 1_555 ? 7 AC2 4 HIS A 62 ? HIS A 62 . ? 1_555 ? 8 AC2 4 HIS A 70 ? HIS A 70 . ? 1_555 ? 9 AC2 4 HIS A 79 ? HIS A 79 . ? 1_555 ? 10 AC2 4 ASP A 82 ? ASP A 82 . ? 1_555 ? 11 AC3 10 HIS A 47 ? HIS A 47 . ? 1_555 ? 12 AC3 10 HIS A 62 ? HIS A 62 . ? 1_555 ? 13 AC3 10 HIS A 119 ? HIS A 119 . ? 1_555 ? 14 AC3 10 THR A 139 ? THR A 139 . ? 1_555 ? 15 AC3 10 ARG A 145 ? ARG A 145 . ? 1_555 ? 16 AC3 10 CU B . ? CU A 158 . ? 1_555 ? 17 AC3 10 HOH E . ? HOH A 304 . ? 1_555 ? 18 AC3 10 HOH E . ? HOH A 324 . ? 1_555 ? 19 AC3 10 HOH E . ? HOH A 325 . ? 1_555 ? 20 AC3 10 HOH E . ? HOH A 356 . ? 1_555 ? # _database_PDB_matrix.entry_id 3KBF _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3KBF _atom_sites.fract_transf_matrix[1][1] 0.025508 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014496 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009051 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CU N O S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 1 1 SER SER A . n A 1 2 ASN 2 2 2 ASN ASN A . n A 1 3 ARG 3 3 3 ARG ARG A . n A 1 4 ALA 4 4 4 ALA ALA A . n A 1 5 VAL 5 5 5 VAL VAL A . n A 1 6 ALA 6 6 6 ALA ALA A . n A 1 7 VAL 7 7 7 VAL VAL A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 ARG 9 9 9 ARG ARG A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 GLU 11 11 11 GLU GLU A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 THR 14 14 14 THR THR A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 THR 16 16 16 THR THR A . n A 1 17 ILE 17 17 17 ILE ILE A . n A 1 18 TRP 18 18 18 TRP TRP A . n A 1 19 ILE 19 19 19 ILE ILE A . n A 1 20 THR 20 20 20 THR THR A . n A 1 21 GLN 21 21 21 GLN GLN A . n A 1 22 LYS 22 22 22 LYS LYS A . n A 1 23 SER 23 23 23 SER SER A . n A 1 24 GLU 24 24 24 GLU GLU A . n A 1 25 ASN 25 25 25 ASN ASN A . n A 1 26 ASP 26 26 26 ASP ASP A . n A 1 27 GLN 27 27 27 GLN GLN A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 VAL 29 29 29 VAL VAL A . n A 1 30 ILE 30 30 30 ILE ILE A . n A 1 31 GLU 31 31 31 GLU GLU A . n A 1 32 GLY 32 32 32 GLY GLY A . n A 1 33 GLU 33 33 33 GLU GLU A . n A 1 34 ILE 34 34 34 ILE ILE A . n A 1 35 LYS 35 35 35 LYS LYS A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 LEU 37 37 37 LEU LEU A . n A 1 38 THR 38 38 38 THR THR A . n A 1 39 PRO 39 39 39 PRO PRO A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 LEU 41 41 41 LEU LEU A . n A 1 42 HIS 42 42 42 HIS HIS A . n A 1 43 GLY 43 43 43 GLY GLY A . n A 1 44 PHE 44 44 44 PHE PHE A . n A 1 45 HIS 45 45 45 HIS HIS A . n A 1 46 VAL 46 46 46 VAL VAL A . n A 1 47 HIS 47 47 47 HIS HIS A . n A 1 48 GLN 48 48 48 GLN GLN A . n A 1 49 TYR 49 49 49 TYR TYR A . n A 1 50 GLY 50 50 50 GLY GLY A . n A 1 51 ASP 51 51 51 ASP ASP A . n A 1 52 SER 52 52 52 SER SER A . n A 1 53 THR 53 53 53 THR THR A . n A 1 54 ASN 54 54 54 ASN ASN A . n A 1 55 GLY 55 55 55 GLY GLY A . n A 1 56 CYS 56 56 56 CYS CYS A . n A 1 57 ILE 57 57 57 ILE ILE A . n A 1 58 SER 58 58 58 SER SER A . n A 1 59 ALA 59 59 59 ALA ALA A . n A 1 60 GLY 60 60 60 GLY GLY A . n A 1 61 PRO 61 61 61 PRO PRO A . n A 1 62 HIS 62 62 62 HIS HIS A . n A 1 63 PHE 63 63 63 PHE PHE A . n A 1 64 ASN 64 64 64 ASN ASN A . n A 1 65 PRO 65 65 65 PRO PRO A . n A 1 66 PHE 66 66 66 PHE PHE A . n A 1 67 GLY 67 67 67 GLY GLY A . n A 1 68 LYS 68 68 68 LYS LYS A . n A 1 69 THR 69 69 69 THR THR A . n A 1 70 HIS 70 70 70 HIS HIS A . n A 1 71 GLY 71 71 71 GLY GLY A . n A 1 72 GLY 72 72 72 GLY GLY A . n A 1 73 PRO 73 73 73 PRO PRO A . n A 1 74 LYS 74 74 74 LYS LYS A . n A 1 75 SER 75 75 75 SER SER A . n A 1 76 GLU 76 76 76 GLU GLU A . n A 1 77 ILE 77 77 77 ILE ILE A . n A 1 78 ARG 78 78 78 ARG ARG A . n A 1 79 HIS 79 79 79 HIS HIS A . n A 1 80 VAL 80 80 80 VAL VAL A . n A 1 81 GLY 81 81 81 GLY GLY A . n A 1 82 ASP 82 82 82 ASP ASP A . n A 1 83 LEU 83 83 83 LEU LEU A . n A 1 84 GLY 84 84 84 GLY GLY A . n A 1 85 ASN 85 85 85 ASN ASN A . n A 1 86 VAL 86 86 86 VAL VAL A . n A 1 87 GLU 87 87 87 GLU GLU A . n A 1 88 ALA 88 88 88 ALA ALA A . n A 1 89 GLY 89 89 89 GLY GLY A . n A 1 90 ALA 90 90 90 ALA ALA A . n A 1 91 ASP 91 91 91 ASP ASP A . n A 1 92 GLY 92 92 92 GLY GLY A . n A 1 93 VAL 93 93 93 VAL VAL A . n A 1 94 ALA 94 94 94 ALA ALA A . n A 1 95 LYS 95 95 95 LYS LYS A . n A 1 96 ILE 96 96 96 ILE ILE A . n A 1 97 LYS 97 97 97 LYS LYS A . n A 1 98 LEU 98 98 98 LEU LEU A . n A 1 99 THR 99 99 99 THR THR A . n A 1 100 ASP 100 100 100 ASP ASP A . n A 1 101 THR 101 101 101 THR THR A . n A 1 102 LEU 102 102 102 LEU LEU A . n A 1 103 VAL 103 103 103 VAL VAL A . n A 1 104 THR 104 104 104 THR THR A . n A 1 105 LEU 105 105 105 LEU LEU A . n A 1 106 TYR 106 106 106 TYR TYR A . n A 1 107 GLY 107 107 107 GLY GLY A . n A 1 108 PRO 108 108 108 PRO PRO A . n A 1 109 ASN 109 109 109 ASN ASN A . n A 1 110 THR 110 110 110 THR THR A . n A 1 111 VAL 111 111 111 VAL VAL A . n A 1 112 VAL 112 112 112 VAL VAL A . n A 1 113 GLY 113 113 113 GLY GLY A . n A 1 114 ARG 114 114 114 ARG ARG A . n A 1 115 SER 115 115 115 SER SER A . n A 1 116 MET 116 116 116 MET MET A . n A 1 117 VAL 117 117 117 VAL VAL A . n A 1 118 VAL 118 118 118 VAL VAL A . n A 1 119 HIS 119 119 119 HIS HIS A . n A 1 120 ALA 120 120 120 ALA ALA A . n A 1 121 GLY 121 121 121 GLY GLY A . n A 1 122 GLN 122 122 122 GLN GLN A . n A 1 123 ASP 123 123 123 ASP ASP A . n A 1 124 ASP 124 124 124 ASP ASP A . n A 1 125 LEU 125 125 125 LEU LEU A . n A 1 126 GLY 126 126 126 GLY GLY A . n A 1 127 GLU 127 127 127 GLU GLU A . n A 1 128 GLY 128 128 128 GLY GLY A . n A 1 129 VAL 129 129 129 VAL VAL A . n A 1 130 GLY 130 130 130 GLY GLY A . n A 1 131 ASP 131 131 131 ASP ASP A . n A 1 132 LYS 132 132 132 LYS LYS A . n A 1 133 ALA 133 133 133 ALA ALA A . n A 1 134 GLU 134 134 134 GLU GLU A . n A 1 135 GLU 135 135 135 GLU GLU A . n A 1 136 SER 136 136 136 SER SER A . n A 1 137 LYS 137 137 137 LYS LYS A . n A 1 138 LYS 138 138 138 LYS LYS A . n A 1 139 THR 139 139 139 THR THR A . n A 1 140 GLY 140 140 140 GLY GLY A . n A 1 141 ASN 141 141 141 ASN ASN A . n A 1 142 ALA 142 142 142 ALA ALA A . n A 1 143 GLY 143 143 143 GLY GLY A . n A 1 144 ALA 144 144 144 ALA ALA A . n A 1 145 ARG 145 145 145 ARG ARG A . n A 1 146 ALA 146 146 146 ALA ALA A . n A 1 147 ALA 147 147 147 ALA ALA A . n A 1 148 CYS 148 148 148 CYS CYS A . n A 1 149 GLY 149 149 149 GLY GLY A . n A 1 150 VAL 150 150 150 VAL VAL A . n A 1 151 ILE 151 151 151 ILE ILE A . n A 1 152 ALA 152 152 152 ALA ALA A . n A 1 153 LEU 153 153 153 LEU LEU A . n A 1 154 ALA 154 154 154 ALA ALA A . n A 1 155 ALA 155 155 155 ALA ALA A . n A 1 156 PRO 156 156 156 PRO PRO A . n A 1 157 GLN 157 157 ? ? ? A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2060 ? 1 MORE -60 ? 1 'SSA (A^2)' 14430 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 3_554 -x,y,-z-1/2 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -55.2440000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 ND1 ? A HIS 45 ? A HIS 45 ? 1_555 CU A B CU . ? A CU 158 ? 1_555 NE2 ? A HIS 47 ? A HIS 47 ? 1_555 135.2 ? 2 ND1 ? A HIS 45 ? A HIS 45 ? 1_555 CU A B CU . ? A CU 158 ? 1_555 NE2 ? A HIS 119 ? A HIS 119 ? 1_555 100.5 ? 3 NE2 ? A HIS 47 ? A HIS 47 ? 1_555 CU A B CU . ? A CU 158 ? 1_555 NE2 ? A HIS 119 ? A HIS 119 ? 1_555 121.4 ? 4 NE2 ? A HIS 47 ? A HIS 47 ? 1_555 CU B B CU . ? A CU 158 ? 1_555 NE2 ? A HIS 119 ? A HIS 119 ? 1_555 119.5 ? 5 NE2 ? A HIS 47 ? A HIS 47 ? 1_555 CU B B CU . ? A CU 158 ? 1_555 O3 ? D SO4 . ? A SO4 160 ? 1_555 111.6 ? 6 NE2 ? A HIS 119 ? A HIS 119 ? 1_555 CU B B CU . ? A CU 158 ? 1_555 O3 ? D SO4 . ? A SO4 160 ? 1_555 101.4 ? 7 NE2 ? A HIS 47 ? A HIS 47 ? 1_555 CU B B CU . ? A CU 158 ? 1_555 ND1 ? A HIS 45 ? A HIS 45 ? 1_555 110.9 ? 8 NE2 ? A HIS 119 ? A HIS 119 ? 1_555 CU B B CU . ? A CU 158 ? 1_555 ND1 ? A HIS 45 ? A HIS 45 ? 1_555 91.7 ? 9 O3 ? D SO4 . ? A SO4 160 ? 1_555 CU B B CU . ? A CU 158 ? 1_555 ND1 ? A HIS 45 ? A HIS 45 ? 1_555 120.6 ? 10 ND1 ? A HIS 62 ? A HIS 62 ? 1_555 ZN ? C ZN . ? A ZN 159 ? 1_555 ND1 ? A HIS 70 ? A HIS 70 ? 1_555 102.1 ? 11 ND1 ? A HIS 62 ? A HIS 62 ? 1_555 ZN ? C ZN . ? A ZN 159 ? 1_555 ND1 ? A HIS 79 ? A HIS 79 ? 1_555 111.9 ? 12 ND1 ? A HIS 70 ? A HIS 70 ? 1_555 ZN ? C ZN . ? A ZN 159 ? 1_555 ND1 ? A HIS 79 ? A HIS 79 ? 1_555 122.8 ? 13 ND1 ? A HIS 62 ? A HIS 62 ? 1_555 ZN ? C ZN . ? A ZN 159 ? 1_555 OD1 ? A ASP 82 ? A ASP 82 ? 1_555 105.4 ? 14 ND1 ? A HIS 70 ? A HIS 70 ? 1_555 ZN ? C ZN . ? A ZN 159 ? 1_555 OD1 ? A ASP 82 ? A ASP 82 ? 1_555 98.1 ? 15 ND1 ? A HIS 79 ? A HIS 79 ? 1_555 ZN ? C ZN . ? A ZN 159 ? 1_555 OD1 ? A ASP 82 ? A ASP 82 ? 1_555 114.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-11-03 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHASER phasing . ? 1 PHENIX refinement '(phenix.refine: 1.5_2)' ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id GLN _pdbx_unobs_or_zero_occ_residues.auth_seq_id 157 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id GLN _pdbx_unobs_or_zero_occ_residues.label_seq_id 157 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'COPPER (II) ION' CU 3 'ZINC ION' ZN 4 'SULFATE ION' SO4 5 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CU 1 158 1 CU CU A . C 3 ZN 1 159 1 ZN ZN A . D 4 SO4 1 160 1 SO4 SO4 A . E 5 HOH 1 161 161 HOH HOH A . E 5 HOH 2 162 162 HOH HOH A . E 5 HOH 3 163 163 HOH HOH A . E 5 HOH 4 164 164 HOH HOH A . E 5 HOH 5 165 165 HOH HOH A . E 5 HOH 6 166 166 HOH HOH A . E 5 HOH 7 167 167 HOH HOH A . E 5 HOH 8 168 168 HOH HOH A . E 5 HOH 9 169 169 HOH HOH A . E 5 HOH 10 170 170 HOH HOH A . E 5 HOH 11 171 171 HOH HOH A . E 5 HOH 12 172 172 HOH HOH A . E 5 HOH 13 173 173 HOH HOH A . E 5 HOH 14 174 174 HOH HOH A . E 5 HOH 15 175 175 HOH HOH A . E 5 HOH 16 176 176 HOH HOH A . E 5 HOH 17 177 177 HOH HOH A . E 5 HOH 18 178 178 HOH HOH A . E 5 HOH 19 179 179 HOH HOH A . E 5 HOH 20 180 180 HOH HOH A . E 5 HOH 21 181 181 HOH HOH A . E 5 HOH 22 182 182 HOH HOH A . E 5 HOH 23 183 183 HOH HOH A . E 5 HOH 24 184 184 HOH HOH A . E 5 HOH 25 185 185 HOH HOH A . E 5 HOH 26 186 186 HOH HOH A . E 5 HOH 27 187 187 HOH HOH A . E 5 HOH 28 188 188 HOH HOH A . E 5 HOH 29 189 189 HOH HOH A . E 5 HOH 30 190 190 HOH HOH A . E 5 HOH 31 191 191 HOH HOH A . E 5 HOH 32 192 192 HOH HOH A . E 5 HOH 33 193 193 HOH HOH A . E 5 HOH 34 194 194 HOH HOH A . E 5 HOH 35 195 195 HOH HOH A . E 5 HOH 36 196 196 HOH HOH A . E 5 HOH 37 197 197 HOH HOH A . E 5 HOH 38 198 198 HOH HOH A . E 5 HOH 39 199 199 HOH HOH A . E 5 HOH 40 200 200 HOH HOH A . E 5 HOH 41 201 201 HOH HOH A . E 5 HOH 42 202 202 HOH HOH A . E 5 HOH 43 203 203 HOH HOH A . E 5 HOH 44 204 204 HOH HOH A . E 5 HOH 45 205 205 HOH HOH A . E 5 HOH 46 206 206 HOH HOH A . E 5 HOH 47 207 207 HOH HOH A . E 5 HOH 48 208 208 HOH HOH A . E 5 HOH 49 209 209 HOH HOH A . E 5 HOH 50 210 210 HOH HOH A . E 5 HOH 51 211 211 HOH HOH A . E 5 HOH 52 212 212 HOH HOH A . E 5 HOH 53 213 213 HOH HOH A . E 5 HOH 54 214 214 HOH HOH A . E 5 HOH 55 215 215 HOH HOH A . E 5 HOH 56 216 216 HOH HOH A . E 5 HOH 57 217 217 HOH HOH A . E 5 HOH 58 218 218 HOH HOH A . E 5 HOH 59 219 219 HOH HOH A . E 5 HOH 60 220 220 HOH HOH A . E 5 HOH 61 221 221 HOH HOH A . E 5 HOH 62 222 222 HOH HOH A . E 5 HOH 63 223 1 HOH HOH A . E 5 HOH 64 224 2 HOH HOH A . E 5 HOH 65 225 3 HOH HOH A . E 5 HOH 66 226 4 HOH HOH A . E 5 HOH 67 227 5 HOH HOH A . E 5 HOH 68 228 6 HOH HOH A . E 5 HOH 69 229 7 HOH HOH A . E 5 HOH 70 230 8 HOH HOH A . E 5 HOH 71 231 9 HOH HOH A . E 5 HOH 72 232 10 HOH HOH A . E 5 HOH 73 233 11 HOH HOH A . E 5 HOH 74 234 12 HOH HOH A . E 5 HOH 75 235 13 HOH HOH A . E 5 HOH 76 236 14 HOH HOH A . E 5 HOH 77 237 15 HOH HOH A . E 5 HOH 78 238 16 HOH HOH A . E 5 HOH 79 239 17 HOH HOH A . E 5 HOH 80 240 18 HOH HOH A . E 5 HOH 81 241 19 HOH HOH A . E 5 HOH 82 242 20 HOH HOH A . E 5 HOH 83 243 21 HOH HOH A . E 5 HOH 84 244 22 HOH HOH A . E 5 HOH 85 245 23 HOH HOH A . E 5 HOH 86 246 24 HOH HOH A . E 5 HOH 87 247 25 HOH HOH A . E 5 HOH 88 248 26 HOH HOH A . E 5 HOH 89 249 27 HOH HOH A . E 5 HOH 90 250 28 HOH HOH A . E 5 HOH 91 251 29 HOH HOH A . E 5 HOH 92 252 30 HOH HOH A . E 5 HOH 93 253 31 HOH HOH A . E 5 HOH 94 254 32 HOH HOH A . E 5 HOH 95 255 33 HOH HOH A . E 5 HOH 96 256 34 HOH HOH A . E 5 HOH 97 257 35 HOH HOH A . E 5 HOH 98 258 36 HOH HOH A . E 5 HOH 99 259 37 HOH HOH A . E 5 HOH 100 260 38 HOH HOH A . E 5 HOH 101 261 39 HOH HOH A . E 5 HOH 102 262 40 HOH HOH A . E 5 HOH 103 263 41 HOH HOH A . E 5 HOH 104 264 42 HOH HOH A . E 5 HOH 105 265 43 HOH HOH A . E 5 HOH 106 266 44 HOH HOH A . E 5 HOH 107 267 45 HOH HOH A . E 5 HOH 108 268 46 HOH HOH A . E 5 HOH 109 269 47 HOH HOH A . E 5 HOH 110 270 48 HOH HOH A . E 5 HOH 111 271 49 HOH HOH A . E 5 HOH 112 272 50 HOH HOH A . E 5 HOH 113 273 51 HOH HOH A . E 5 HOH 114 274 52 HOH HOH A . E 5 HOH 115 275 53 HOH HOH A . E 5 HOH 116 276 54 HOH HOH A . E 5 HOH 117 277 55 HOH HOH A . E 5 HOH 118 278 56 HOH HOH A . E 5 HOH 119 279 57 HOH HOH A . E 5 HOH 120 280 58 HOH HOH A . E 5 HOH 121 281 59 HOH HOH A . E 5 HOH 122 282 60 HOH HOH A . E 5 HOH 123 283 61 HOH HOH A . E 5 HOH 124 284 62 HOH HOH A . E 5 HOH 125 285 63 HOH HOH A . E 5 HOH 126 286 64 HOH HOH A . E 5 HOH 127 287 65 HOH HOH A . E 5 HOH 128 288 66 HOH HOH A . E 5 HOH 129 289 67 HOH HOH A . E 5 HOH 130 290 68 HOH HOH A . E 5 HOH 131 291 69 HOH HOH A . E 5 HOH 132 292 70 HOH HOH A . E 5 HOH 133 293 71 HOH HOH A . E 5 HOH 134 294 72 HOH HOH A . E 5 HOH 135 295 73 HOH HOH A . E 5 HOH 136 296 74 HOH HOH A . E 5 HOH 137 297 75 HOH HOH A . E 5 HOH 138 298 76 HOH HOH A . E 5 HOH 139 299 77 HOH HOH A . E 5 HOH 140 300 78 HOH HOH A . E 5 HOH 141 301 79 HOH HOH A . E 5 HOH 142 302 80 HOH HOH A . E 5 HOH 143 303 81 HOH HOH A . E 5 HOH 144 304 82 HOH HOH A . E 5 HOH 145 305 83 HOH HOH A . E 5 HOH 146 306 84 HOH HOH A . E 5 HOH 147 307 85 HOH HOH A . E 5 HOH 148 308 86 HOH HOH A . E 5 HOH 149 309 87 HOH HOH A . E 5 HOH 150 310 88 HOH HOH A . E 5 HOH 151 311 89 HOH HOH A . E 5 HOH 152 312 90 HOH HOH A . E 5 HOH 153 313 91 HOH HOH A . E 5 HOH 154 314 92 HOH HOH A . E 5 HOH 155 315 93 HOH HOH A . E 5 HOH 156 316 94 HOH HOH A . E 5 HOH 157 317 95 HOH HOH A . E 5 HOH 158 318 96 HOH HOH A . E 5 HOH 159 319 97 HOH HOH A . E 5 HOH 160 320 98 HOH HOH A . E 5 HOH 161 321 99 HOH HOH A . E 5 HOH 162 322 100 HOH HOH A . E 5 HOH 163 323 101 HOH HOH A . E 5 HOH 164 324 102 HOH HOH A . E 5 HOH 165 325 103 HOH HOH A . E 5 HOH 166 326 104 HOH HOH A . E 5 HOH 167 327 105 HOH HOH A . E 5 HOH 168 328 106 HOH HOH A . E 5 HOH 169 329 107 HOH HOH A . E 5 HOH 170 330 108 HOH HOH A . E 5 HOH 171 331 109 HOH HOH A . E 5 HOH 172 333 111 HOH HOH A . E 5 HOH 173 334 112 HOH HOH A . E 5 HOH 174 335 113 HOH HOH A . E 5 HOH 175 336 114 HOH HOH A . E 5 HOH 176 337 115 HOH HOH A . E 5 HOH 177 338 116 HOH HOH A . E 5 HOH 178 339 117 HOH HOH A . E 5 HOH 179 340 118 HOH HOH A . E 5 HOH 180 341 119 HOH HOH A . E 5 HOH 181 342 120 HOH HOH A . E 5 HOH 182 343 121 HOH HOH A . E 5 HOH 183 344 122 HOH HOH A . E 5 HOH 184 345 123 HOH HOH A . E 5 HOH 185 346 124 HOH HOH A . E 5 HOH 186 347 125 HOH HOH A . E 5 HOH 187 348 126 HOH HOH A . E 5 HOH 188 349 127 HOH HOH A . E 5 HOH 189 350 128 HOH HOH A . E 5 HOH 190 351 129 HOH HOH A . E 5 HOH 191 352 130 HOH HOH A . E 5 HOH 192 353 131 HOH HOH A . E 5 HOH 193 354 132 HOH HOH A . E 5 HOH 194 355 133 HOH HOH A . E 5 HOH 195 356 134 HOH HOH A . E 5 HOH 196 357 135 HOH HOH A . E 5 HOH 197 358 136 HOH HOH A . E 5 HOH 198 359 137 HOH HOH A . E 5 HOH 199 360 138 HOH HOH A . E 5 HOH 200 361 139 HOH HOH A . E 5 HOH 201 362 140 HOH HOH A . E 5 HOH 202 363 141 HOH HOH A . E 5 HOH 203 364 142 HOH HOH A . E 5 HOH 204 365 143 HOH HOH A . E 5 HOH 205 366 144 HOH HOH A . E 5 HOH 206 367 145 HOH HOH A . E 5 HOH 207 368 146 HOH HOH A . E 5 HOH 208 369 147 HOH HOH A . E 5 HOH 209 370 148 HOH HOH A . E 5 HOH 210 371 149 HOH HOH A . E 5 HOH 211 372 150 HOH HOH A . E 5 HOH 212 373 151 HOH HOH A . E 5 HOH 213 374 152 HOH HOH A . E 5 HOH 214 375 153 HOH HOH A . E 5 HOH 215 376 154 HOH HOH A . E 5 HOH 216 377 155 HOH HOH A . E 5 HOH 217 378 156 HOH HOH A . E 5 HOH 218 379 157 HOH HOH A . E 5 HOH 219 380 158 HOH HOH A . E 5 HOH 220 381 159 HOH HOH A . E 5 HOH 221 382 160 HOH HOH A . #