data_3KBR # _entry.id 3KBR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3KBR RCSB RCSB055792 WWPDB D_1000055792 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC37816.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3KBR _pdbx_database_status.recvd_initial_deposition_date 2009-10-20 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tan, K.' 1 'Marshall, N.' 2 'Buck, K.' 3 'Joachimiak, A.' 4 'Midwest Center for Structural Genomics (MCSG)' 5 # _citation.id primary _citation.title 'The crystal structure of cyclohexadienyl dehydratase precursor from Pseudomonas aeruginosa PA01' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Tan, K.' 1 primary 'Marshall, N.' 2 primary 'Buck, K.' 3 primary 'Joachimiak, A.' 4 # _cell.entry_id 3KBR _cell.length_a 126.390 _cell.length_b 126.390 _cell.length_c 88.981 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3KBR _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Cyclohexadienyl dehydratase' 27635.338 1 '4.2.1.51, 4.2.1.91' ? ? ? 2 non-polymer syn 'NICKEL (II) ION' 58.693 1 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 4 non-polymer syn GLYCEROL 92.094 5 ? ? ? ? 5 non-polymer syn 'FORMIC ACID' 46.025 2 ? ? ? ? 6 non-polymer syn '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' 238.305 1 ? ? ? ? 7 water nat water 18.015 163 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Prephenate dehydratase, Arogenate dehydratase' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNAQESRLDRILESGVLRVATTGDYKPFSYRTEEGGYAGFDVD(MSE)AQRLAESLGAKLVVVPTSWPNL(MSE)RDFAD DRFDIA(MSE)SGISINLERQRQAYFSIPYLRDGKTPITLCSEEARFQTLEQIDQPGVTAIVNPGGTNEKFARANLKKAR ILVHPDNVTIFQQIVDGKADL(MSE)(MSE)TDAIEARLQSRLHPELCAVHPQQPFDFAEKAYLLPRDEAFKRYVDQWLH IAEQSGLLRQR(MSE)EHWLEYR ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAQESRLDRILESGVLRVATTGDYKPFSYRTEEGGYAGFDVDMAQRLAESLGAKLVVVPTSWPNLMRDFADDRFDIAMS GISINLERQRQAYFSIPYLRDGKTPITLCSEEARFQTLEQIDQPGVTAIVNPGGTNEKFARANLKKARILVHPDNVTIFQ QIVDGKADLMMTDAIEARLQSRLHPELCAVHPQQPFDFAEKAYLLPRDEAFKRYVDQWLHIAEQSGLLRQRMEHWLEYR ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC37816.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 GLN n 1 5 GLU n 1 6 SER n 1 7 ARG n 1 8 LEU n 1 9 ASP n 1 10 ARG n 1 11 ILE n 1 12 LEU n 1 13 GLU n 1 14 SER n 1 15 GLY n 1 16 VAL n 1 17 LEU n 1 18 ARG n 1 19 VAL n 1 20 ALA n 1 21 THR n 1 22 THR n 1 23 GLY n 1 24 ASP n 1 25 TYR n 1 26 LYS n 1 27 PRO n 1 28 PHE n 1 29 SER n 1 30 TYR n 1 31 ARG n 1 32 THR n 1 33 GLU n 1 34 GLU n 1 35 GLY n 1 36 GLY n 1 37 TYR n 1 38 ALA n 1 39 GLY n 1 40 PHE n 1 41 ASP n 1 42 VAL n 1 43 ASP n 1 44 MSE n 1 45 ALA n 1 46 GLN n 1 47 ARG n 1 48 LEU n 1 49 ALA n 1 50 GLU n 1 51 SER n 1 52 LEU n 1 53 GLY n 1 54 ALA n 1 55 LYS n 1 56 LEU n 1 57 VAL n 1 58 VAL n 1 59 VAL n 1 60 PRO n 1 61 THR n 1 62 SER n 1 63 TRP n 1 64 PRO n 1 65 ASN n 1 66 LEU n 1 67 MSE n 1 68 ARG n 1 69 ASP n 1 70 PHE n 1 71 ALA n 1 72 ASP n 1 73 ASP n 1 74 ARG n 1 75 PHE n 1 76 ASP n 1 77 ILE n 1 78 ALA n 1 79 MSE n 1 80 SER n 1 81 GLY n 1 82 ILE n 1 83 SER n 1 84 ILE n 1 85 ASN n 1 86 LEU n 1 87 GLU n 1 88 ARG n 1 89 GLN n 1 90 ARG n 1 91 GLN n 1 92 ALA n 1 93 TYR n 1 94 PHE n 1 95 SER n 1 96 ILE n 1 97 PRO n 1 98 TYR n 1 99 LEU n 1 100 ARG n 1 101 ASP n 1 102 GLY n 1 103 LYS n 1 104 THR n 1 105 PRO n 1 106 ILE n 1 107 THR n 1 108 LEU n 1 109 CYS n 1 110 SER n 1 111 GLU n 1 112 GLU n 1 113 ALA n 1 114 ARG n 1 115 PHE n 1 116 GLN n 1 117 THR n 1 118 LEU n 1 119 GLU n 1 120 GLN n 1 121 ILE n 1 122 ASP n 1 123 GLN n 1 124 PRO n 1 125 GLY n 1 126 VAL n 1 127 THR n 1 128 ALA n 1 129 ILE n 1 130 VAL n 1 131 ASN n 1 132 PRO n 1 133 GLY n 1 134 GLY n 1 135 THR n 1 136 ASN n 1 137 GLU n 1 138 LYS n 1 139 PHE n 1 140 ALA n 1 141 ARG n 1 142 ALA n 1 143 ASN n 1 144 LEU n 1 145 LYS n 1 146 LYS n 1 147 ALA n 1 148 ARG n 1 149 ILE n 1 150 LEU n 1 151 VAL n 1 152 HIS n 1 153 PRO n 1 154 ASP n 1 155 ASN n 1 156 VAL n 1 157 THR n 1 158 ILE n 1 159 PHE n 1 160 GLN n 1 161 GLN n 1 162 ILE n 1 163 VAL n 1 164 ASP n 1 165 GLY n 1 166 LYS n 1 167 ALA n 1 168 ASP n 1 169 LEU n 1 170 MSE n 1 171 MSE n 1 172 THR n 1 173 ASP n 1 174 ALA n 1 175 ILE n 1 176 GLU n 1 177 ALA n 1 178 ARG n 1 179 LEU n 1 180 GLN n 1 181 SER n 1 182 ARG n 1 183 LEU n 1 184 HIS n 1 185 PRO n 1 186 GLU n 1 187 LEU n 1 188 CYS n 1 189 ALA n 1 190 VAL n 1 191 HIS n 1 192 PRO n 1 193 GLN n 1 194 GLN n 1 195 PRO n 1 196 PHE n 1 197 ASP n 1 198 PHE n 1 199 ALA n 1 200 GLU n 1 201 LYS n 1 202 ALA n 1 203 TYR n 1 204 LEU n 1 205 LEU n 1 206 PRO n 1 207 ARG n 1 208 ASP n 1 209 GLU n 1 210 ALA n 1 211 PHE n 1 212 LYS n 1 213 ARG n 1 214 TYR n 1 215 VAL n 1 216 ASP n 1 217 GLN n 1 218 TRP n 1 219 LEU n 1 220 HIS n 1 221 ILE n 1 222 ALA n 1 223 GLU n 1 224 GLN n 1 225 SER n 1 226 GLY n 1 227 LEU n 1 228 LEU n 1 229 ARG n 1 230 GLN n 1 231 ARG n 1 232 MSE n 1 233 GLU n 1 234 HIS n 1 235 TRP n 1 236 LEU n 1 237 GLU n 1 238 TYR n 1 239 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'PA3475, pheC, Pseudomonas aeruginosa' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain PA01 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Pseudomonas aeruginosa' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 287 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain pPK1037 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG9 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PHEC_PSEAE _struct_ref.pdbx_db_accession Q01269 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;QESRLDRILESGVLRVATTGDYKPFSYRTEEGGYAGFDVDMAQRLAESLGAKLVVVPTSWPNLMRDFADDRFDIAMSGIS INLERQRQAYFSIPYLRDGKTPITLCSEEARFQTLEQIDQPGVTAIVNPGGTNEKFARANLKKARILVHPDNVTIFQQIV DGKADLMMTDAIEARLQSRLHPELCAVHPQQPFDFAEKAYLLPRDEAFKRYVDQWLHIAEQSGLLRQRMEHWLEYR ; _struct_ref.pdbx_align_begin 26 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3KBR _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 239 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q01269 _struct_ref_seq.db_align_beg 26 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 261 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 26 _struct_ref_seq.pdbx_auth_seq_align_end 261 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3KBR SER A 1 ? UNP Q01269 ? ? 'expression tag' 23 1 1 3KBR ASN A 2 ? UNP Q01269 ? ? 'expression tag' 24 2 1 3KBR ALA A 3 ? UNP Q01269 ? ? 'expression tag' 25 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EPE non-polymer . '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' HEPES 'C8 H18 N2 O4 S' 238.305 FMT non-polymer . 'FORMIC ACID' ? 'C H2 O2' 46.025 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 NI non-polymer . 'NICKEL (II) ION' ? 'Ni 2' 58.693 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3KBR _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.47 _exptl_crystal.density_percent_sol 50.30 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;0.005M CoCl2 hexahydrate, 0.005M NiCl2 hexahydrate, 0.005M CaCl2 dihydrate, 0.005M MgCl2 hexahydrate, 0.1M HEPES, 12% w/v PEG 3350, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 289K ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2009-08-11 _diffrn_detector.details mirror # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97948 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97948 # _reflns.entry_id 3KBR _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 28.8 _reflns.d_resolution_high 1.659 _reflns.number_obs 32048 _reflns.number_all 32048 _reflns.percent_possible_obs 99.1 _reflns.pdbx_Rmerge_I_obs 0.090 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 37.1 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.66 _reflns_shell.d_res_low 1.69 _reflns_shell.percent_possible_all 93.9 _reflns_shell.Rmerge_I_obs 0.795 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.75 _reflns_shell.pdbx_redundancy 6.9 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3KBR _refine.ls_number_reflns_obs 62026 _refine.ls_number_reflns_all 62026 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.90 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 28.732 _refine.ls_d_res_high 1.659 _refine.ls_percent_reflns_obs 98.72 _refine.ls_R_factor_obs 0.1843 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1827 _refine.ls_R_factor_R_free 0.2131 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.09 _refine.ls_number_reflns_R_free 3159 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.360 _refine.solvent_model_param_bsol 53.051 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.21 _refine.pdbx_overall_phase_error 24.55 _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1855 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 53 _refine_hist.number_atoms_solvent 163 _refine_hist.number_atoms_total 2071 _refine_hist.d_res_high 1.659 _refine_hist.d_res_low 28.732 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.006 ? ? 2010 'X-RAY DIFFRACTION' ? f_angle_d 1.031 ? ? 2715 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 17.097 ? ? 780 'X-RAY DIFFRACTION' ? f_chiral_restr 0.066 ? ? 289 'X-RAY DIFFRACTION' ? f_plane_restr 0.004 ? ? 353 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 1.6587 1.7180 5549 0.2914 92.00 0.3061 . . 310 . . . . 'X-RAY DIFFRACTION' . 1.7180 1.7867 5861 0.2692 99.00 0.3204 . . 305 . . . . 'X-RAY DIFFRACTION' . 1.7867 1.8680 5954 0.2390 100.00 0.2699 . . 307 . . . . 'X-RAY DIFFRACTION' . 1.8680 1.9665 5976 0.2062 100.00 0.2475 . . 317 . . . . 'X-RAY DIFFRACTION' . 1.9665 2.0897 5890 0.1900 100.00 0.2334 . . 343 . . . . 'X-RAY DIFFRACTION' . 2.0897 2.2510 5959 0.1769 100.00 0.1990 . . 342 . . . . 'X-RAY DIFFRACTION' . 2.2510 2.4774 5981 0.1734 100.00 0.2365 . . 302 . . . . 'X-RAY DIFFRACTION' . 2.4774 2.8356 5959 0.1826 100.00 0.2286 . . 305 . . . . 'X-RAY DIFFRACTION' . 2.8356 3.5715 5942 0.1783 100.00 0.2157 . . 341 . . . . 'X-RAY DIFFRACTION' . 3.5715 28.7360 5796 0.1587 97.00 0.1660 . . 287 . . . . # _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.entry_id 3KBR _pdbx_refine.R_factor_all_no_cutoff ? _pdbx_refine.R_factor_obs_no_cutoff ? _pdbx_refine.free_R_factor_no_cutoff ? _pdbx_refine.free_R_error_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff ? _pdbx_refine.R_factor_obs_4sig_cutoff ? _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff ? # _struct.entry_id 3KBR _struct.title 'The crystal structure of cyclohexadienyl dehydratase precursor from Pseudomonas aeruginosa PA01' _struct.pdbx_descriptor 'Cyclohexadienyl dehydratase (E.C.4.2.1.51, 4.2.1.91)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3KBR _struct_keywords.pdbx_keywords LYASE _struct_keywords.text ;cyclohexadienyl dehydratase precursor, Pseudomonas aeruginosa PA01, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, Amino-acid biosynthesis, Aromatic amino acid biosynthesis, Lyase, Multifunctional enzyme, Phenylalanine biosynthesis ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 5 ? H N N 4 ? I N N 4 ? J N N 5 ? K N N 6 ? L N N 7 ? # _struct_biol.id 1 _struct_biol.details 'Experimentally unknown. It is predicted to be monomeric.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 6 ? GLY A 15 ? SER A 28 GLY A 37 1 ? 10 HELX_P HELX_P2 2 GLY A 39 ? LEU A 52 ? GLY A 61 LEU A 74 1 ? 14 HELX_P HELX_P3 3 ASN A 65 ? ASP A 72 ? ASN A 87 ASP A 94 1 ? 8 HELX_P HELX_P4 4 ASN A 85 ? ARG A 90 ? ASN A 107 ARG A 112 1 ? 6 HELX_P HELX_P5 5 SER A 110 ? GLN A 116 ? SER A 132 GLN A 138 5 ? 7 HELX_P HELX_P6 6 THR A 117 ? ASP A 122 ? THR A 139 ASP A 144 1 ? 6 HELX_P HELX_P7 7 GLY A 134 ? LEU A 144 ? GLY A 156 LEU A 166 1 ? 11 HELX_P HELX_P8 8 THR A 157 ? ASP A 164 ? THR A 179 ASP A 186 1 ? 8 HELX_P HELX_P9 9 ALA A 174 ? HIS A 184 ? ALA A 196 HIS A 206 1 ? 11 HELX_P HELX_P10 10 ASP A 208 ? SER A 225 ? ASP A 230 SER A 247 1 ? 18 HELX_P HELX_P11 11 GLY A 226 ? LEU A 236 ? GLY A 248 LEU A 258 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 109 SG ? ? ? 1_555 A CYS 188 SG ? ? A CYS 131 A CYS 210 1_555 ? ? ? ? ? ? ? 2.039 ? covale1 covale ? ? A ASP 43 C ? ? ? 1_555 A MSE 44 N ? ? A ASP 65 A MSE 66 1_555 ? ? ? ? ? ? ? 1.329 ? covale2 covale ? ? A MSE 44 C ? ? ? 1_555 A ALA 45 N ? ? A MSE 66 A ALA 67 1_555 ? ? ? ? ? ? ? 1.330 ? covale3 covale ? ? A LEU 66 C ? ? ? 1_555 A MSE 67 N ? ? A LEU 88 A MSE 89 1_555 ? ? ? ? ? ? ? 1.325 ? covale4 covale ? ? A MSE 67 C ? ? ? 1_555 A ARG 68 N ? ? A MSE 89 A ARG 90 1_555 ? ? ? ? ? ? ? 1.332 ? covale5 covale ? ? A ALA 78 C ? ? ? 1_555 A MSE 79 N ? ? A ALA 100 A MSE 101 1_555 ? ? ? ? ? ? ? 1.324 ? covale6 covale ? ? A MSE 79 C ? ? ? 1_555 A SER 80 N ? ? A MSE 101 A SER 102 1_555 ? ? ? ? ? ? ? 1.329 ? covale7 covale ? ? A LEU 169 C ? ? ? 1_555 A MSE 170 N ? ? A LEU 191 A MSE 192 1_555 ? ? ? ? ? ? ? 1.327 ? covale8 covale ? ? A MSE 170 C ? ? ? 1_555 A MSE 171 N ? ? A MSE 192 A MSE 193 1_555 ? ? ? ? ? ? ? 1.326 ? covale9 covale ? ? A MSE 171 C ? ? ? 1_555 A THR 172 N ? ? A MSE 193 A THR 194 1_555 ? ? ? ? ? ? ? 1.323 ? covale10 covale ? ? A ARG 231 C ? ? ? 1_555 A MSE 232 N ? ? A ARG 253 A MSE 254 1_555 ? ? ? ? ? ? ? 1.331 ? covale11 covale ? ? A MSE 232 C ? ? ? 1_555 A GLU 233 N ? ? A MSE 254 A GLU 255 1_555 ? ? ? ? ? ? ? 1.328 ? metalc1 metalc ? ? A GLU 112 OE1 ? ? ? 1_555 B NI . NI ? ? A GLU 134 A NI 1 1_555 ? ? ? ? ? ? ? 2.527 ? metalc2 metalc ? ? A GLU 112 OE2 ? ? ? 1_555 B NI . NI ? ? A GLU 134 A NI 1 1_555 ? ? ? ? ? ? ? 2.351 ? metalc3 metalc ? ? A HIS 191 NE2 ? ? ? 1_555 B NI . NI ? ? A HIS 213 A NI 1 1_555 ? ? ? ? ? ? ? 2.276 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? metalc ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LYS _struct_mon_prot_cis.label_seq_id 26 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LYS _struct_mon_prot_cis.auth_seq_id 48 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 27 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 49 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 8.35 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 3 ? C ? 2 ? D ? 2 ? E ? 3 ? F ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel F 1 2 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 55 ? PRO A 60 ? LYS A 77 PRO A 82 A 2 VAL A 16 ? THR A 21 ? VAL A 38 THR A 43 A 3 ILE A 77 ? ALA A 78 ? ILE A 99 ALA A 100 B 1 ASP A 24 ? TYR A 25 ? ASP A 46 TYR A 47 B 2 SER A 29 ? ARG A 31 ? SER A 51 ARG A 53 B 3 TYR A 37 ? ALA A 38 ? TYR A 59 ALA A 60 C 1 TYR A 93 ? PHE A 94 ? TYR A 115 PHE A 116 C 2 LEU A 204 ? LEU A 205 ? LEU A 226 LEU A 227 D 1 LEU A 99 ? ASP A 101 ? LEU A 121 ASP A 123 D 2 ALA A 199 ? LYS A 201 ? ALA A 221 LYS A 223 E 1 LEU A 169 ? ASP A 173 ? LEU A 191 ASP A 195 E 2 LYS A 103 ? LEU A 108 ? LYS A 125 LEU A 130 E 3 LEU A 187 ? ALA A 189 ? LEU A 209 ALA A 211 F 1 THR A 127 ? VAL A 130 ? THR A 149 VAL A 152 F 2 ARG A 148 ? VAL A 151 ? ARG A 170 VAL A 173 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O VAL A 59 ? O VAL A 81 N VAL A 19 ? N VAL A 41 A 2 3 N ALA A 20 ? N ALA A 42 O ILE A 77 ? O ILE A 99 B 1 2 N TYR A 25 ? N TYR A 47 O SER A 29 ? O SER A 51 B 2 3 N TYR A 30 ? N TYR A 52 O ALA A 38 ? O ALA A 60 C 1 2 N TYR A 93 ? N TYR A 115 O LEU A 205 ? O LEU A 227 D 1 2 N ASP A 101 ? N ASP A 123 O ALA A 199 ? O ALA A 221 E 1 2 O MSE A 170 ? O MSE A 192 N ILE A 106 ? N ILE A 128 E 2 3 N THR A 107 ? N THR A 129 O CYS A 188 ? O CYS A 210 F 1 2 N ALA A 128 ? N ALA A 150 O ARG A 148 ? O ARG A 170 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE NI A 1' AC2 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE CL A 262' AC3 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE GOL A 263' AC4 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE GOL A 2' AC5 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE GOL A 3' AC6 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE GOL A 4' AC7 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE GOL A 5' AC8 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE FMT A 264' AC9 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE FMT A 265' BC1 Software ? ? ? ? 14 'BINDING SITE FOR RESIDUE EPE A 266' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 GLU A 112 ? GLU A 134 . ? 1_555 ? 2 AC1 5 HIS A 191 ? HIS A 213 . ? 1_555 ? 3 AC1 5 HIS A 234 ? HIS A 256 . ? 5_556 ? 4 AC1 5 CL C . ? CL A 262 . ? 1_555 ? 5 AC1 5 HOH L . ? HOH A 394 . ? 5_556 ? 6 AC2 6 NI B . ? NI A 1 . ? 1_555 ? 7 AC2 6 GLU A 112 ? GLU A 134 . ? 1_555 ? 8 AC2 6 CYS A 188 ? CYS A 210 . ? 1_555 ? 9 AC2 6 HIS A 191 ? HIS A 213 . ? 1_555 ? 10 AC2 6 HIS A 234 ? HIS A 256 . ? 5_556 ? 11 AC2 6 HOH L . ? HOH A 412 . ? 5_556 ? 12 AC3 4 ASP A 197 ? ASP A 219 . ? 1_555 ? 13 AC3 4 ALA A 199 ? ALA A 221 . ? 1_555 ? 14 AC3 4 HOH L . ? HOH A 324 . ? 1_555 ? 15 AC3 4 HOH L . ? HOH A 359 . ? 1_555 ? 16 AC4 4 GLU A 5 ? GLU A 27 . ? 1_555 ? 17 AC4 4 ASP A 9 ? ASP A 31 . ? 1_555 ? 18 AC4 4 ARG A 10 ? ARG A 32 . ? 1_555 ? 19 AC4 4 GLU A 13 ? GLU A 35 . ? 1_555 ? 20 AC5 5 GLU A 5 ? GLU A 27 . ? 1_555 ? 21 AC5 5 SER A 6 ? SER A 28 . ? 1_555 ? 22 AC5 5 ASP A 208 ? ASP A 230 . ? 1_555 ? 23 AC5 5 GLU A 209 ? GLU A 231 . ? 1_555 ? 24 AC5 5 ALA A 210 ? ALA A 232 . ? 1_555 ? 25 AC6 6 LEU A 12 ? LEU A 34 . ? 1_555 ? 26 AC6 6 GLU A 13 ? GLU A 35 . ? 1_555 ? 27 AC6 6 SER A 14 ? SER A 36 . ? 1_555 ? 28 AC6 6 GLY A 15 ? GLY A 37 . ? 1_555 ? 29 AC6 6 GLY A 53 ? GLY A 75 . ? 1_555 ? 30 AC6 6 HOH L . ? HOH A 327 . ? 1_555 ? 31 AC7 4 LEU A 150 ? LEU A 172 . ? 1_555 ? 32 AC7 4 VAL A 151 ? VAL A 173 . ? 1_555 ? 33 AC7 4 HIS A 152 ? HIS A 174 . ? 1_555 ? 34 AC7 4 PRO A 153 ? PRO A 175 . ? 1_555 ? 35 AC8 2 MSE A 232 ? MSE A 254 . ? 1_555 ? 36 AC8 2 GLU A 233 ? GLU A 255 . ? 1_555 ? 37 AC9 4 PRO A 192 ? PRO A 214 . ? 1_555 ? 38 AC9 4 GLN A 193 ? GLN A 215 . ? 1_555 ? 39 AC9 4 PRO A 195 ? PRO A 217 . ? 1_555 ? 40 AC9 4 HOH L . ? HOH A 336 . ? 1_555 ? 41 BC1 14 HOH L . ? HOH A 18 . ? 1_555 ? 42 BC1 14 ASP A 24 ? ASP A 46 . ? 1_555 ? 43 BC1 14 TRP A 63 ? TRP A 85 . ? 1_555 ? 44 BC1 14 GLY A 81 ? GLY A 103 . ? 1_555 ? 45 BC1 14 ILE A 82 ? ILE A 104 . ? 1_555 ? 46 BC1 14 SER A 83 ? SER A 105 . ? 1_555 ? 47 BC1 14 ARG A 88 ? ARG A 110 . ? 1_555 ? 48 BC1 14 THR A 135 ? THR A 157 . ? 1_555 ? 49 BC1 14 ASN A 155 ? ASN A 177 . ? 1_555 ? 50 BC1 14 ASP A 173 ? ASP A 195 . ? 1_555 ? 51 BC1 14 GLU A 176 ? GLU A 198 . ? 1_555 ? 52 BC1 14 LYS A 201 ? LYS A 223 . ? 1_555 ? 53 BC1 14 HOH L . ? HOH A 279 . ? 1_555 ? 54 BC1 14 HOH L . ? HOH A 297 . ? 1_555 ? # _database_PDB_matrix.entry_id 3KBR _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3KBR _atom_sites.fract_transf_matrix[1][1] 0.007912 _atom_sites.fract_transf_matrix[1][2] 0.004568 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009136 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011238 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N NI O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 23 ? ? ? A . n A 1 2 ASN 2 24 ? ? ? A . n A 1 3 ALA 3 25 ? ? ? A . n A 1 4 GLN 4 26 ? ? ? A . n A 1 5 GLU 5 27 27 GLU GLU A . n A 1 6 SER 6 28 28 SER SER A . n A 1 7 ARG 7 29 29 ARG ARG A . n A 1 8 LEU 8 30 30 LEU LEU A . n A 1 9 ASP 9 31 31 ASP ASP A . n A 1 10 ARG 10 32 32 ARG ARG A . n A 1 11 ILE 11 33 33 ILE ILE A . n A 1 12 LEU 12 34 34 LEU LEU A . n A 1 13 GLU 13 35 35 GLU GLU A . n A 1 14 SER 14 36 36 SER SER A . n A 1 15 GLY 15 37 37 GLY GLY A . n A 1 16 VAL 16 38 38 VAL VAL A . n A 1 17 LEU 17 39 39 LEU LEU A . n A 1 18 ARG 18 40 40 ARG ARG A . n A 1 19 VAL 19 41 41 VAL VAL A . n A 1 20 ALA 20 42 42 ALA ALA A . n A 1 21 THR 21 43 43 THR THR A . n A 1 22 THR 22 44 44 THR THR A . n A 1 23 GLY 23 45 45 GLY GLY A . n A 1 24 ASP 24 46 46 ASP ASP A . n A 1 25 TYR 25 47 47 TYR TYR A . n A 1 26 LYS 26 48 48 LYS LYS A . n A 1 27 PRO 27 49 49 PRO PRO A . n A 1 28 PHE 28 50 50 PHE PHE A . n A 1 29 SER 29 51 51 SER SER A . n A 1 30 TYR 30 52 52 TYR TYR A . n A 1 31 ARG 31 53 53 ARG ARG A . n A 1 32 THR 32 54 54 THR THR A . n A 1 33 GLU 33 55 55 GLU GLU A . n A 1 34 GLU 34 56 56 GLU GLU A . n A 1 35 GLY 35 57 57 GLY GLY A . n A 1 36 GLY 36 58 58 GLY GLY A . n A 1 37 TYR 37 59 59 TYR TYR A . n A 1 38 ALA 38 60 60 ALA ALA A . n A 1 39 GLY 39 61 61 GLY GLY A . n A 1 40 PHE 40 62 62 PHE PHE A . n A 1 41 ASP 41 63 63 ASP ASP A . n A 1 42 VAL 42 64 64 VAL VAL A . n A 1 43 ASP 43 65 65 ASP ASP A . n A 1 44 MSE 44 66 66 MSE MSE A . n A 1 45 ALA 45 67 67 ALA ALA A . n A 1 46 GLN 46 68 68 GLN GLN A . n A 1 47 ARG 47 69 69 ARG ARG A . n A 1 48 LEU 48 70 70 LEU LEU A . n A 1 49 ALA 49 71 71 ALA ALA A . n A 1 50 GLU 50 72 72 GLU GLU A . n A 1 51 SER 51 73 73 SER SER A . n A 1 52 LEU 52 74 74 LEU LEU A . n A 1 53 GLY 53 75 75 GLY GLY A . n A 1 54 ALA 54 76 76 ALA ALA A . n A 1 55 LYS 55 77 77 LYS LYS A . n A 1 56 LEU 56 78 78 LEU LEU A . n A 1 57 VAL 57 79 79 VAL VAL A . n A 1 58 VAL 58 80 80 VAL VAL A . n A 1 59 VAL 59 81 81 VAL VAL A . n A 1 60 PRO 60 82 82 PRO PRO A . n A 1 61 THR 61 83 83 THR THR A . n A 1 62 SER 62 84 84 SER SER A . n A 1 63 TRP 63 85 85 TRP TRP A . n A 1 64 PRO 64 86 86 PRO PRO A . n A 1 65 ASN 65 87 87 ASN ASN A . n A 1 66 LEU 66 88 88 LEU LEU A . n A 1 67 MSE 67 89 89 MSE MSE A . n A 1 68 ARG 68 90 90 ARG ARG A . n A 1 69 ASP 69 91 91 ASP ASP A . n A 1 70 PHE 70 92 92 PHE PHE A . n A 1 71 ALA 71 93 93 ALA ALA A . n A 1 72 ASP 72 94 94 ASP ASP A . n A 1 73 ASP 73 95 95 ASP ASP A . n A 1 74 ARG 74 96 96 ARG ARG A . n A 1 75 PHE 75 97 97 PHE PHE A . n A 1 76 ASP 76 98 98 ASP ASP A . n A 1 77 ILE 77 99 99 ILE ILE A . n A 1 78 ALA 78 100 100 ALA ALA A . n A 1 79 MSE 79 101 101 MSE MSE A . n A 1 80 SER 80 102 102 SER SER A . n A 1 81 GLY 81 103 103 GLY GLY A . n A 1 82 ILE 82 104 104 ILE ILE A . n A 1 83 SER 83 105 105 SER SER A . n A 1 84 ILE 84 106 106 ILE ILE A . n A 1 85 ASN 85 107 107 ASN ASN A . n A 1 86 LEU 86 108 108 LEU LEU A . n A 1 87 GLU 87 109 109 GLU GLU A . n A 1 88 ARG 88 110 110 ARG ARG A . n A 1 89 GLN 89 111 111 GLN GLN A . n A 1 90 ARG 90 112 112 ARG ARG A . n A 1 91 GLN 91 113 113 GLN GLN A . n A 1 92 ALA 92 114 114 ALA ALA A . n A 1 93 TYR 93 115 115 TYR TYR A . n A 1 94 PHE 94 116 116 PHE PHE A . n A 1 95 SER 95 117 117 SER SER A . n A 1 96 ILE 96 118 118 ILE ILE A . n A 1 97 PRO 97 119 119 PRO PRO A . n A 1 98 TYR 98 120 120 TYR TYR A . n A 1 99 LEU 99 121 121 LEU LEU A . n A 1 100 ARG 100 122 122 ARG ARG A . n A 1 101 ASP 101 123 123 ASP ASP A . n A 1 102 GLY 102 124 124 GLY GLY A . n A 1 103 LYS 103 125 125 LYS LYS A . n A 1 104 THR 104 126 126 THR THR A . n A 1 105 PRO 105 127 127 PRO PRO A . n A 1 106 ILE 106 128 128 ILE ILE A . n A 1 107 THR 107 129 129 THR THR A . n A 1 108 LEU 108 130 130 LEU LEU A . n A 1 109 CYS 109 131 131 CYS CYS A . n A 1 110 SER 110 132 132 SER SER A . n A 1 111 GLU 111 133 133 GLU GLU A . n A 1 112 GLU 112 134 134 GLU GLU A . n A 1 113 ALA 113 135 135 ALA ALA A . n A 1 114 ARG 114 136 136 ARG ARG A . n A 1 115 PHE 115 137 137 PHE PHE A . n A 1 116 GLN 116 138 138 GLN GLN A . n A 1 117 THR 117 139 139 THR THR A . n A 1 118 LEU 118 140 140 LEU LEU A . n A 1 119 GLU 119 141 141 GLU GLU A . n A 1 120 GLN 120 142 142 GLN GLN A . n A 1 121 ILE 121 143 143 ILE ILE A . n A 1 122 ASP 122 144 144 ASP ASP A . n A 1 123 GLN 123 145 145 GLN GLN A . n A 1 124 PRO 124 146 146 PRO PRO A . n A 1 125 GLY 125 147 147 GLY GLY A . n A 1 126 VAL 126 148 148 VAL VAL A . n A 1 127 THR 127 149 149 THR THR A . n A 1 128 ALA 128 150 150 ALA ALA A . n A 1 129 ILE 129 151 151 ILE ILE A . n A 1 130 VAL 130 152 152 VAL VAL A . n A 1 131 ASN 131 153 153 ASN ASN A . n A 1 132 PRO 132 154 154 PRO PRO A . n A 1 133 GLY 133 155 155 GLY GLY A . n A 1 134 GLY 134 156 156 GLY GLY A . n A 1 135 THR 135 157 157 THR THR A . n A 1 136 ASN 136 158 158 ASN ASN A . n A 1 137 GLU 137 159 159 GLU GLU A . n A 1 138 LYS 138 160 160 LYS LYS A . n A 1 139 PHE 139 161 161 PHE PHE A . n A 1 140 ALA 140 162 162 ALA ALA A . n A 1 141 ARG 141 163 163 ARG ARG A . n A 1 142 ALA 142 164 164 ALA ALA A . n A 1 143 ASN 143 165 165 ASN ASN A . n A 1 144 LEU 144 166 166 LEU LEU A . n A 1 145 LYS 145 167 167 LYS LYS A . n A 1 146 LYS 146 168 168 LYS LYS A . n A 1 147 ALA 147 169 169 ALA ALA A . n A 1 148 ARG 148 170 170 ARG ARG A . n A 1 149 ILE 149 171 171 ILE ILE A . n A 1 150 LEU 150 172 172 LEU LEU A . n A 1 151 VAL 151 173 173 VAL VAL A . n A 1 152 HIS 152 174 174 HIS HIS A . n A 1 153 PRO 153 175 175 PRO PRO A . n A 1 154 ASP 154 176 176 ASP ASP A . n A 1 155 ASN 155 177 177 ASN ASN A . n A 1 156 VAL 156 178 178 VAL VAL A . n A 1 157 THR 157 179 179 THR THR A . n A 1 158 ILE 158 180 180 ILE ILE A . n A 1 159 PHE 159 181 181 PHE PHE A . n A 1 160 GLN 160 182 182 GLN GLN A . n A 1 161 GLN 161 183 183 GLN GLN A . n A 1 162 ILE 162 184 184 ILE ILE A . n A 1 163 VAL 163 185 185 VAL VAL A . n A 1 164 ASP 164 186 186 ASP ASP A . n A 1 165 GLY 165 187 187 GLY GLY A . n A 1 166 LYS 166 188 188 LYS LYS A . n A 1 167 ALA 167 189 189 ALA ALA A . n A 1 168 ASP 168 190 190 ASP ASP A . n A 1 169 LEU 169 191 191 LEU LEU A . n A 1 170 MSE 170 192 192 MSE MSE A . n A 1 171 MSE 171 193 193 MSE MSE A . n A 1 172 THR 172 194 194 THR THR A . n A 1 173 ASP 173 195 195 ASP ASP A . n A 1 174 ALA 174 196 196 ALA ALA A . n A 1 175 ILE 175 197 197 ILE ILE A . n A 1 176 GLU 176 198 198 GLU GLU A . n A 1 177 ALA 177 199 199 ALA ALA A . n A 1 178 ARG 178 200 200 ARG ARG A . n A 1 179 LEU 179 201 201 LEU LEU A . n A 1 180 GLN 180 202 202 GLN GLN A . n A 1 181 SER 181 203 203 SER SER A . n A 1 182 ARG 182 204 204 ARG ARG A . n A 1 183 LEU 183 205 205 LEU LEU A . n A 1 184 HIS 184 206 206 HIS HIS A . n A 1 185 PRO 185 207 207 PRO PRO A . n A 1 186 GLU 186 208 208 GLU GLU A . n A 1 187 LEU 187 209 209 LEU LEU A . n A 1 188 CYS 188 210 210 CYS CYS A . n A 1 189 ALA 189 211 211 ALA ALA A . n A 1 190 VAL 190 212 212 VAL VAL A . n A 1 191 HIS 191 213 213 HIS HIS A . n A 1 192 PRO 192 214 214 PRO PRO A . n A 1 193 GLN 193 215 215 GLN GLN A . n A 1 194 GLN 194 216 ? ? ? A . n A 1 195 PRO 195 217 217 PRO PRO A . n A 1 196 PHE 196 218 218 PHE PHE A . n A 1 197 ASP 197 219 219 ASP ASP A . n A 1 198 PHE 198 220 220 PHE PHE A . n A 1 199 ALA 199 221 221 ALA ALA A . n A 1 200 GLU 200 222 222 GLU GLU A . n A 1 201 LYS 201 223 223 LYS LYS A . n A 1 202 ALA 202 224 224 ALA ALA A . n A 1 203 TYR 203 225 225 TYR TYR A . n A 1 204 LEU 204 226 226 LEU LEU A . n A 1 205 LEU 205 227 227 LEU LEU A . n A 1 206 PRO 206 228 228 PRO PRO A . n A 1 207 ARG 207 229 229 ARG ARG A . n A 1 208 ASP 208 230 230 ASP ASP A . n A 1 209 GLU 209 231 231 GLU GLU A . n A 1 210 ALA 210 232 232 ALA ALA A . n A 1 211 PHE 211 233 233 PHE PHE A . n A 1 212 LYS 212 234 234 LYS LYS A . n A 1 213 ARG 213 235 235 ARG ARG A . n A 1 214 TYR 214 236 236 TYR TYR A . n A 1 215 VAL 215 237 237 VAL VAL A . n A 1 216 ASP 216 238 238 ASP ASP A . n A 1 217 GLN 217 239 239 GLN GLN A . n A 1 218 TRP 218 240 240 TRP TRP A . n A 1 219 LEU 219 241 241 LEU LEU A . n A 1 220 HIS 220 242 242 HIS HIS A . n A 1 221 ILE 221 243 243 ILE ILE A . n A 1 222 ALA 222 244 244 ALA ALA A . n A 1 223 GLU 223 245 245 GLU GLU A . n A 1 224 GLN 224 246 246 GLN GLN A . n A 1 225 SER 225 247 247 SER SER A . n A 1 226 GLY 226 248 248 GLY GLY A . n A 1 227 LEU 227 249 249 LEU LEU A . n A 1 228 LEU 228 250 250 LEU LEU A . n A 1 229 ARG 229 251 251 ARG ARG A . n A 1 230 GLN 230 252 252 GLN GLN A . n A 1 231 ARG 231 253 253 ARG ARG A . n A 1 232 MSE 232 254 254 MSE MSE A . n A 1 233 GLU 233 255 255 GLU GLU A . n A 1 234 HIS 234 256 256 HIS HIS A . n A 1 235 TRP 235 257 257 TRP TRP A . n A 1 236 LEU 236 258 258 LEU LEU A . n A 1 237 GLU 237 259 ? ? ? A . n A 1 238 TYR 238 260 ? ? ? A . n A 1 239 ARG 239 261 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 44 A MSE 66 ? MET SELENOMETHIONINE 2 A MSE 67 A MSE 89 ? MET SELENOMETHIONINE 3 A MSE 79 A MSE 101 ? MET SELENOMETHIONINE 4 A MSE 170 A MSE 192 ? MET SELENOMETHIONINE 5 A MSE 171 A MSE 193 ? MET SELENOMETHIONINE 6 A MSE 232 A MSE 254 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 26010 ? 1 MORE -68 ? 1 'SSA (A^2)' 55580 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 88.9810000000 5 'crystal symmetry operation' 5_556 x-y,-y,-z+1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 88.9810000000 6 'crystal symmetry operation' 6_556 -x,-x+y,-z+1 -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 -0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 88.9810000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OE1 ? A GLU 112 ? A GLU 134 ? 1_555 NI ? B NI . ? A NI 1 ? 1_555 OE2 ? A GLU 112 ? A GLU 134 ? 1_555 53.4 ? 2 OE1 ? A GLU 112 ? A GLU 134 ? 1_555 NI ? B NI . ? A NI 1 ? 1_555 NE2 ? A HIS 191 ? A HIS 213 ? 1_555 141.3 ? 3 OE2 ? A GLU 112 ? A GLU 134 ? 1_555 NI ? B NI . ? A NI 1 ? 1_555 NE2 ? A HIS 191 ? A HIS 213 ? 1_555 88.1 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-11-10 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Non-polymer description' 2 2 'Structure model' 'Version format compliance' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 27.7168 17.3742 36.6360 0.1811 0.2452 0.2360 0.0077 0.0350 0.0045 1.6635 1.7498 0.9851 -0.2676 0.0520 0.2118 0.0083 0.0992 0.0580 -0.0065 -0.0374 -0.3589 0.0518 0.1511 0.0259 'X-RAY DIFFRACTION' 2 ? ? ? ? ? 0.3027 0.2761 0.3186 -0.0791 -0.0309 -0.0265 3.9677 2.2002 2.0879 2.3186 1.0007 -0.3812 0.3924 0.0103 -0.0923 0.2719 -0.1775 -0.1313 -0.2497 0.2929 -0.1743 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details 'chain A resid 124:215' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SBC-Collect 'data collection' . ? 1 SHELXD phasing . ? 2 MLPHARE phasing . ? 3 DM 'model building' . ? 4 ARP 'model building' . ? 5 WARP 'model building' . ? 6 HKL-3000 phasing . ? 7 PHENIX refinement '(phenix.refine: 1.5_2)' ? 8 HKL-3000 'data reduction' . ? 9 HKL-3000 'data scaling' . ? 10 DM phasing . ? 11 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 102 ? ? -170.44 38.37 2 1 ASP A 123 ? ? -144.68 -142.86 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 23 ? A SER 1 2 1 Y 1 A ASN 24 ? A ASN 2 3 1 Y 1 A ALA 25 ? A ALA 3 4 1 Y 1 A GLN 26 ? A GLN 4 5 1 Y 1 A GLN 216 ? A GLN 194 6 1 Y 1 A GLU 259 ? A GLU 237 7 1 Y 1 A TYR 260 ? A TYR 238 8 1 Y 1 A ARG 261 ? A ARG 239 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'NICKEL (II) ION' NI 3 'CHLORIDE ION' CL 4 GLYCEROL GOL 5 'FORMIC ACID' FMT 6 '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' EPE 7 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NI 1 1 1 NI NI A . C 3 CL 1 262 1 CL CL A . D 4 GOL 1 263 1 GOL GOL A . E 4 GOL 1 2 2 GOL GOL A . F 4 GOL 1 3 3 GOL GOL A . G 5 FMT 1 265 2 FMT FMT A . H 4 GOL 1 4 4 GOL GOL A . I 4 GOL 1 5 5 GOL GOL A . J 5 FMT 1 264 1 FMT FMT A . K 6 EPE 1 266 1 EPE EPE A . L 7 HOH 1 6 6 HOH HOH A . L 7 HOH 2 7 7 HOH HOH A . L 7 HOH 3 8 8 HOH HOH A . L 7 HOH 4 9 9 HOH HOH A . L 7 HOH 5 10 10 HOH HOH A . L 7 HOH 6 11 11 HOH HOH A . L 7 HOH 7 12 12 HOH HOH A . L 7 HOH 8 13 13 HOH HOH A . L 7 HOH 9 14 14 HOH HOH A . L 7 HOH 10 15 15 HOH HOH A . L 7 HOH 11 16 16 HOH HOH A . L 7 HOH 12 17 17 HOH HOH A . L 7 HOH 13 18 18 HOH HOH A . L 7 HOH 14 19 19 HOH HOH A . L 7 HOH 15 20 20 HOH HOH A . L 7 HOH 16 21 21 HOH HOH A . L 7 HOH 17 22 22 HOH HOH A . L 7 HOH 18 267 1 HOH HOH A . L 7 HOH 19 268 2 HOH HOH A . L 7 HOH 20 269 3 HOH HOH A . L 7 HOH 21 270 4 HOH HOH A . L 7 HOH 22 271 5 HOH HOH A . L 7 HOH 23 272 23 HOH HOH A . L 7 HOH 24 273 24 HOH HOH A . L 7 HOH 25 274 25 HOH HOH A . L 7 HOH 26 275 26 HOH HOH A . L 7 HOH 27 276 27 HOH HOH A . L 7 HOH 28 277 28 HOH HOH A . L 7 HOH 29 278 29 HOH HOH A . L 7 HOH 30 279 30 HOH HOH A . L 7 HOH 31 280 31 HOH HOH A . L 7 HOH 32 281 32 HOH HOH A . L 7 HOH 33 282 33 HOH HOH A . L 7 HOH 34 283 34 HOH HOH A . L 7 HOH 35 284 35 HOH HOH A . L 7 HOH 36 285 36 HOH HOH A . L 7 HOH 37 286 37 HOH HOH A . L 7 HOH 38 287 38 HOH HOH A . L 7 HOH 39 288 39 HOH HOH A . L 7 HOH 40 289 40 HOH HOH A . L 7 HOH 41 290 41 HOH HOH A . L 7 HOH 42 291 42 HOH HOH A . L 7 HOH 43 292 43 HOH HOH A . L 7 HOH 44 293 44 HOH HOH A . L 7 HOH 45 294 45 HOH HOH A . L 7 HOH 46 295 46 HOH HOH A . L 7 HOH 47 296 47 HOH HOH A . L 7 HOH 48 297 48 HOH HOH A . L 7 HOH 49 298 49 HOH HOH A . L 7 HOH 50 299 50 HOH HOH A . L 7 HOH 51 300 51 HOH HOH A . L 7 HOH 52 301 52 HOH HOH A . L 7 HOH 53 302 53 HOH HOH A . L 7 HOH 54 303 54 HOH HOH A . L 7 HOH 55 304 55 HOH HOH A . L 7 HOH 56 305 56 HOH HOH A . L 7 HOH 57 306 57 HOH HOH A . L 7 HOH 58 307 58 HOH HOH A . L 7 HOH 59 308 59 HOH HOH A . L 7 HOH 60 309 60 HOH HOH A . L 7 HOH 61 310 61 HOH HOH A . L 7 HOH 62 311 62 HOH HOH A . L 7 HOH 63 312 63 HOH HOH A . L 7 HOH 64 313 64 HOH HOH A . L 7 HOH 65 314 65 HOH HOH A . L 7 HOH 66 315 66 HOH HOH A . L 7 HOH 67 316 67 HOH HOH A . L 7 HOH 68 317 68 HOH HOH A . L 7 HOH 69 318 69 HOH HOH A . L 7 HOH 70 319 70 HOH HOH A . L 7 HOH 71 320 71 HOH HOH A . L 7 HOH 72 321 72 HOH HOH A . L 7 HOH 73 322 73 HOH HOH A . L 7 HOH 74 323 74 HOH HOH A . L 7 HOH 75 324 75 HOH HOH A . L 7 HOH 76 325 76 HOH HOH A . L 7 HOH 77 326 77 HOH HOH A . L 7 HOH 78 327 78 HOH HOH A . L 7 HOH 79 328 79 HOH HOH A . L 7 HOH 80 329 80 HOH HOH A . L 7 HOH 81 330 81 HOH HOH A . L 7 HOH 82 331 82 HOH HOH A . L 7 HOH 83 332 83 HOH HOH A . L 7 HOH 84 333 84 HOH HOH A . L 7 HOH 85 334 85 HOH HOH A . L 7 HOH 86 335 86 HOH HOH A . L 7 HOH 87 336 87 HOH HOH A . L 7 HOH 88 337 88 HOH HOH A . L 7 HOH 89 338 89 HOH HOH A . L 7 HOH 90 339 90 HOH HOH A . L 7 HOH 91 340 91 HOH HOH A . L 7 HOH 92 341 92 HOH HOH A . L 7 HOH 93 342 93 HOH HOH A . L 7 HOH 94 343 94 HOH HOH A . L 7 HOH 95 344 95 HOH HOH A . L 7 HOH 96 345 96 HOH HOH A . L 7 HOH 97 346 97 HOH HOH A . L 7 HOH 98 347 98 HOH HOH A . L 7 HOH 99 348 99 HOH HOH A . L 7 HOH 100 349 100 HOH HOH A . L 7 HOH 101 350 101 HOH HOH A . L 7 HOH 102 351 102 HOH HOH A . L 7 HOH 103 352 103 HOH HOH A . L 7 HOH 104 353 104 HOH HOH A . L 7 HOH 105 354 105 HOH HOH A . L 7 HOH 106 355 106 HOH HOH A . L 7 HOH 107 356 107 HOH HOH A . L 7 HOH 108 357 108 HOH HOH A . L 7 HOH 109 358 109 HOH HOH A . L 7 HOH 110 359 110 HOH HOH A . L 7 HOH 111 360 111 HOH HOH A . L 7 HOH 112 361 112 HOH HOH A . L 7 HOH 113 362 113 HOH HOH A . L 7 HOH 114 363 114 HOH HOH A . L 7 HOH 115 364 115 HOH HOH A . L 7 HOH 116 365 116 HOH HOH A . L 7 HOH 117 366 117 HOH HOH A . L 7 HOH 118 367 118 HOH HOH A . L 7 HOH 119 368 119 HOH HOH A . L 7 HOH 120 369 120 HOH HOH A . L 7 HOH 121 370 121 HOH HOH A . L 7 HOH 122 371 122 HOH HOH A . L 7 HOH 123 372 123 HOH HOH A . L 7 HOH 124 373 124 HOH HOH A . L 7 HOH 125 374 125 HOH HOH A . L 7 HOH 126 375 126 HOH HOH A . L 7 HOH 127 376 127 HOH HOH A . L 7 HOH 128 377 128 HOH HOH A . L 7 HOH 129 378 129 HOH HOH A . L 7 HOH 130 379 130 HOH HOH A . L 7 HOH 131 380 131 HOH HOH A . L 7 HOH 132 381 132 HOH HOH A . L 7 HOH 133 382 133 HOH HOH A . L 7 HOH 134 383 134 HOH HOH A . L 7 HOH 135 384 135 HOH HOH A . L 7 HOH 136 385 136 HOH HOH A . L 7 HOH 137 386 137 HOH HOH A . L 7 HOH 138 387 138 HOH HOH A . L 7 HOH 139 388 139 HOH HOH A . L 7 HOH 140 389 140 HOH HOH A . L 7 HOH 141 390 141 HOH HOH A . L 7 HOH 142 391 142 HOH HOH A . L 7 HOH 143 392 143 HOH HOH A . L 7 HOH 144 393 144 HOH HOH A . L 7 HOH 145 394 145 HOH HOH A . L 7 HOH 146 395 146 HOH HOH A . L 7 HOH 147 396 147 HOH HOH A . L 7 HOH 148 397 148 HOH HOH A . L 7 HOH 149 398 149 HOH HOH A . L 7 HOH 150 399 150 HOH HOH A . L 7 HOH 151 400 151 HOH HOH A . L 7 HOH 152 401 152 HOH HOH A . L 7 HOH 153 402 153 HOH HOH A . L 7 HOH 154 403 154 HOH HOH A . L 7 HOH 155 404 155 HOH HOH A . L 7 HOH 156 405 156 HOH HOH A . L 7 HOH 157 406 157 HOH HOH A . L 7 HOH 158 407 158 HOH HOH A . L 7 HOH 159 408 159 HOH HOH A . L 7 HOH 160 409 160 HOH HOH A . L 7 HOH 161 410 161 HOH HOH A . L 7 HOH 162 411 162 HOH HOH A . L 7 HOH 163 412 163 HOH HOH A . #