HEADER LYASE 20-OCT-09 3KBR TITLE THE CRYSTAL STRUCTURE OF CYCLOHEXADIENYL DEHYDRATASE PRECURSOR FROM TITLE 2 PSEUDOMONAS AERUGINOSA PA01 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLOHEXADIENYL DEHYDRATASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PREPHENATE DEHYDRATASE, AROGENATE DEHYDRATASE; COMPND 5 EC: 4.2.1.51, 4.2.1.91; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 STRAIN: PA01; SOURCE 5 GENE: PA3475, PHEC, PSEUDOMONAS AERUGINOSA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PPK1037; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG9 KEYWDS CYCLOHEXADIENYL DEHYDRATASE PRECURSOR, PSEUDOMONAS AERUGINOSA PA01, KEYWDS 2 STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST KEYWDS 3 CENTER FOR STRUCTURAL GENOMICS, MCSG, AMINO-ACID BIOSYNTHESIS, KEYWDS 4 AROMATIC AMINO ACID BIOSYNTHESIS, LYASE, MULTIFUNCTIONAL ENZYME, KEYWDS 5 PHENYLALANINE BIOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,N.MARSHALL,K.BUCK,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 2 13-JUL-11 3KBR 1 VERSN REVDAT 1 10-NOV-09 3KBR 0 JRNL AUTH K.TAN,N.MARSHALL,K.BUCK,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF CYCLOHEXADIENYL DEHYDRATASE JRNL TITL 2 PRECURSOR FROM PSEUDOMONAS AERUGINOSA PA01 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.5_2) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.900 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 62026 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 3159 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.7360 - 3.5715 0.97 5796 287 0.1587 0.1660 REMARK 3 2 3.5715 - 2.8356 1.00 5942 341 0.1783 0.2157 REMARK 3 3 2.8356 - 2.4774 1.00 5959 305 0.1826 0.2286 REMARK 3 4 2.4774 - 2.2510 1.00 5981 302 0.1734 0.2365 REMARK 3 5 2.2510 - 2.0897 1.00 5959 342 0.1769 0.1990 REMARK 3 6 2.0897 - 1.9665 1.00 5890 343 0.1900 0.2334 REMARK 3 7 1.9665 - 1.8680 1.00 5976 317 0.2062 0.2475 REMARK 3 8 1.8680 - 1.7867 1.00 5954 307 0.2390 0.2699 REMARK 3 9 1.7867 - 1.7180 0.99 5861 305 0.2692 0.3204 REMARK 3 10 1.7180 - 1.6587 0.92 5549 310 0.2914 0.3061 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 53.05 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2010 REMARK 3 ANGLE : 1.031 2715 REMARK 3 CHIRALITY : 0.066 289 REMARK 3 PLANARITY : 0.004 353 REMARK 3 DIHEDRAL : 17.097 780 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A RESID 124:215 REMARK 3 ORIGIN FOR THE GROUP (A): 27.7168 17.3742 36.6360 REMARK 3 T TENSOR REMARK 3 T11: 0.1811 T22: 0.2452 REMARK 3 T33: 0.2360 T12: 0.0077 REMARK 3 T13: 0.0350 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 1.6635 L22: 1.7498 REMARK 3 L33: 0.9851 L12: -0.2676 REMARK 3 L13: 0.0520 L23: 0.2118 REMARK 3 S TENSOR REMARK 3 S11: 0.0083 S12: 0.0992 S13: 0.0580 REMARK 3 S21: -0.0065 S22: -0.0374 S23: -0.3589 REMARK 3 S31: 0.0518 S32: 0.1511 S33: 0.0259 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3KBR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-OCT-09. REMARK 100 THE RCSB ID CODE IS RCSB055792. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-AUG-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97948 REMARK 200 MONOCHROMATOR : SI 111 CRYSTAL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32048 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.659 REMARK 200 RESOLUTION RANGE LOW (A) : 28.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 37.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.79500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.750 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD/MLPHARE/DM/ARP/WARP/HKL3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.005M COCL2 HEXAHYDRATE, 0.005M REMARK 280 NICL2 HEXAHYDRATE, 0.005M CACL2 DIHYDRATE, 0.005M MGCL2 REMARK 280 HEXAHYDRATE, 0.1M HEPES, 12% W/V PEG 3350, PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 63.19500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 36.48565 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 29.66033 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 63.19500 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 36.48565 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 29.66033 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 63.19500 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 36.48565 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 29.66033 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 63.19500 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 36.48565 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 29.66033 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 63.19500 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 36.48565 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 29.66033 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 63.19500 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 36.48565 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 29.66033 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 72.97130 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 59.32067 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 72.97130 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 59.32067 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 72.97130 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 59.32067 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 72.97130 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 59.32067 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 72.97130 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 59.32067 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 72.97130 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 59.32067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: EXPERIMENTALLY UNKNOWN. IT IS PREDICTED TO BE MONOMERIC. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 26010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 55580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 88.98100 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 88.98100 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 88.98100 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 23 REMARK 465 ASN A 24 REMARK 465 ALA A 25 REMARK 465 GLN A 26 REMARK 465 GLN A 216 REMARK 465 GLU A 259 REMARK 465 TYR A 260 REMARK 465 ARG A 261 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 102 38.37 -170.44 REMARK 500 ASP A 123 -142.86 -144.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 344 DISTANCE = 5.18 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 1 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 134 OE1 REMARK 620 2 GLU A 134 OE2 53.4 REMARK 620 3 HIS A 213 NE2 141.3 88.1 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 262 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 263 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 264 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 265 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE A 266 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC37816.1 RELATED DB: TARGETDB DBREF 3KBR A 26 261 UNP Q01269 PHEC_PSEAE 26 261 SEQADV 3KBR SER A 23 UNP Q01269 EXPRESSION TAG SEQADV 3KBR ASN A 24 UNP Q01269 EXPRESSION TAG SEQADV 3KBR ALA A 25 UNP Q01269 EXPRESSION TAG SEQRES 1 A 239 SER ASN ALA GLN GLU SER ARG LEU ASP ARG ILE LEU GLU SEQRES 2 A 239 SER GLY VAL LEU ARG VAL ALA THR THR GLY ASP TYR LYS SEQRES 3 A 239 PRO PHE SER TYR ARG THR GLU GLU GLY GLY TYR ALA GLY SEQRES 4 A 239 PHE ASP VAL ASP MSE ALA GLN ARG LEU ALA GLU SER LEU SEQRES 5 A 239 GLY ALA LYS LEU VAL VAL VAL PRO THR SER TRP PRO ASN SEQRES 6 A 239 LEU MSE ARG ASP PHE ALA ASP ASP ARG PHE ASP ILE ALA SEQRES 7 A 239 MSE SER GLY ILE SER ILE ASN LEU GLU ARG GLN ARG GLN SEQRES 8 A 239 ALA TYR PHE SER ILE PRO TYR LEU ARG ASP GLY LYS THR SEQRES 9 A 239 PRO ILE THR LEU CYS SER GLU GLU ALA ARG PHE GLN THR SEQRES 10 A 239 LEU GLU GLN ILE ASP GLN PRO GLY VAL THR ALA ILE VAL SEQRES 11 A 239 ASN PRO GLY GLY THR ASN GLU LYS PHE ALA ARG ALA ASN SEQRES 12 A 239 LEU LYS LYS ALA ARG ILE LEU VAL HIS PRO ASP ASN VAL SEQRES 13 A 239 THR ILE PHE GLN GLN ILE VAL ASP GLY LYS ALA ASP LEU SEQRES 14 A 239 MSE MSE THR ASP ALA ILE GLU ALA ARG LEU GLN SER ARG SEQRES 15 A 239 LEU HIS PRO GLU LEU CYS ALA VAL HIS PRO GLN GLN PRO SEQRES 16 A 239 PHE ASP PHE ALA GLU LYS ALA TYR LEU LEU PRO ARG ASP SEQRES 17 A 239 GLU ALA PHE LYS ARG TYR VAL ASP GLN TRP LEU HIS ILE SEQRES 18 A 239 ALA GLU GLN SER GLY LEU LEU ARG GLN ARG MSE GLU HIS SEQRES 19 A 239 TRP LEU GLU TYR ARG MODRES 3KBR MSE A 66 MET SELENOMETHIONINE MODRES 3KBR MSE A 89 MET SELENOMETHIONINE MODRES 3KBR MSE A 101 MET SELENOMETHIONINE MODRES 3KBR MSE A 192 MET SELENOMETHIONINE MODRES 3KBR MSE A 193 MET SELENOMETHIONINE MODRES 3KBR MSE A 254 MET SELENOMETHIONINE HET MSE A 66 8 HET MSE A 89 8 HET MSE A 101 8 HET MSE A 192 8 HET MSE A 193 8 HET MSE A 254 8 HET NI A 1 1 HET CL A 262 1 HET GOL A 263 6 HET GOL A 2 6 HET GOL A 3 6 HET FMT A 265 3 HET GOL A 4 6 HET GOL A 5 6 HET FMT A 264 3 HET EPE A 266 15 HETNAM MSE SELENOMETHIONINE HETNAM NI NICKEL (II) ION HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETNAM FMT FORMIC ACID HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EPE HEPES FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 2 NI NI 2+ FORMUL 3 CL CL 1- FORMUL 4 GOL 5(C3 H8 O3) FORMUL 7 FMT 2(C H2 O2) FORMUL 11 EPE C8 H18 N2 O4 S FORMUL 12 HOH *163(H2 O) HELIX 1 1 SER A 28 GLY A 37 1 10 HELIX 2 2 GLY A 61 LEU A 74 1 14 HELIX 3 3 ASN A 87 ASP A 94 1 8 HELIX 4 4 ASN A 107 ARG A 112 1 6 HELIX 5 5 SER A 132 GLN A 138 5 7 HELIX 6 6 THR A 139 ASP A 144 1 6 HELIX 7 7 GLY A 156 LEU A 166 1 11 HELIX 8 8 THR A 179 ASP A 186 1 8 HELIX 9 9 ALA A 196 HIS A 206 1 11 HELIX 10 10 ASP A 230 SER A 247 1 18 HELIX 11 11 GLY A 248 LEU A 258 1 11 SHEET 1 A 3 LYS A 77 PRO A 82 0 SHEET 2 A 3 VAL A 38 THR A 43 1 N VAL A 41 O VAL A 81 SHEET 3 A 3 ILE A 99 ALA A 100 1 O ILE A 99 N ALA A 42 SHEET 1 B 3 ASP A 46 TYR A 47 0 SHEET 2 B 3 SER A 51 ARG A 53 -1 O SER A 51 N TYR A 47 SHEET 3 B 3 TYR A 59 ALA A 60 -1 O ALA A 60 N TYR A 52 SHEET 1 C 2 TYR A 115 PHE A 116 0 SHEET 2 C 2 LEU A 226 LEU A 227 -1 O LEU A 227 N TYR A 115 SHEET 1 D 2 LEU A 121 ASP A 123 0 SHEET 2 D 2 ALA A 221 LYS A 223 -1 O ALA A 221 N ASP A 123 SHEET 1 E 3 LEU A 191 ASP A 195 0 SHEET 2 E 3 LYS A 125 LEU A 130 -1 N ILE A 128 O MSE A 192 SHEET 3 E 3 LEU A 209 ALA A 211 -1 O CYS A 210 N THR A 129 SHEET 1 F 2 THR A 149 VAL A 152 0 SHEET 2 F 2 ARG A 170 VAL A 173 1 O ARG A 170 N ALA A 150 SSBOND 1 CYS A 131 CYS A 210 1555 1555 2.04 LINK C ASP A 65 N MSE A 66 1555 1555 1.33 LINK C MSE A 66 N ALA A 67 1555 1555 1.33 LINK C LEU A 88 N MSE A 89 1555 1555 1.33 LINK C MSE A 89 N ARG A 90 1555 1555 1.33 LINK C ALA A 100 N MSE A 101 1555 1555 1.32 LINK C MSE A 101 N SER A 102 1555 1555 1.33 LINK C LEU A 191 N MSE A 192 1555 1555 1.33 LINK C MSE A 192 N MSE A 193 1555 1555 1.33 LINK C MSE A 193 N THR A 194 1555 1555 1.32 LINK C ARG A 253 N MSE A 254 1555 1555 1.33 LINK C MSE A 254 N GLU A 255 1555 1555 1.33 LINK OE1 GLU A 134 NI NI A 1 1555 1555 2.53 LINK OE2 GLU A 134 NI NI A 1 1555 1555 2.35 LINK NE2 HIS A 213 NI NI A 1 1555 1555 2.28 CISPEP 1 LYS A 48 PRO A 49 0 8.35 SITE 1 AC1 5 GLU A 134 HIS A 213 HIS A 256 CL A 262 SITE 2 AC1 5 HOH A 394 SITE 1 AC2 6 NI A 1 GLU A 134 CYS A 210 HIS A 213 SITE 2 AC2 6 HIS A 256 HOH A 412 SITE 1 AC3 4 ASP A 219 ALA A 221 HOH A 324 HOH A 359 SITE 1 AC4 4 GLU A 27 ASP A 31 ARG A 32 GLU A 35 SITE 1 AC5 5 GLU A 27 SER A 28 ASP A 230 GLU A 231 SITE 2 AC5 5 ALA A 232 SITE 1 AC6 6 LEU A 34 GLU A 35 SER A 36 GLY A 37 SITE 2 AC6 6 GLY A 75 HOH A 327 SITE 1 AC7 4 LEU A 172 VAL A 173 HIS A 174 PRO A 175 SITE 1 AC8 2 MSE A 254 GLU A 255 SITE 1 AC9 4 PRO A 214 GLN A 215 PRO A 217 HOH A 336 SITE 1 BC1 14 HOH A 18 ASP A 46 TRP A 85 GLY A 103 SITE 2 BC1 14 ILE A 104 SER A 105 ARG A 110 THR A 157 SITE 3 BC1 14 ASN A 177 ASP A 195 GLU A 198 LYS A 223 SITE 4 BC1 14 HOH A 279 HOH A 297 CRYST1 126.390 126.390 88.981 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007912 0.004568 0.000000 0.00000 SCALE2 0.000000 0.009136 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011238 0.00000