data_3KC6 # _entry.id 3KC6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.378 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3KC6 pdb_00003kc6 10.2210/pdb3kc6/pdb RCSB RCSB055807 ? ? WWPDB D_1000055807 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id InvaD.07055.a _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3KC6 _pdbx_database_status.recvd_initial_deposition_date 2009-10-20 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _audit_author.name 'Seattle Structural Genomics Center for Infectious Disease (SSGCID)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Biological and structural characterization of a host-adapting amino acid in influenza virus.' _citation.journal_abbrev 'Plos Pathog.' _citation.journal_volume 6 _citation.page_first e1001034 _citation.page_last e1001034 _citation.year 2010 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1553-7366 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20700447 _citation.pdbx_database_id_DOI 10.1371/journal.ppat.1001034 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yamada, S.' 1 ? primary 'Hatta, M.' 2 ? primary 'Staker, B.L.' 3 ? primary 'Watanabe, S.' 4 ? primary 'Imai, M.' 5 ? primary 'Shinya, K.' 6 ? primary 'Sakai-Tagawa, Y.' 7 ? primary 'Ito, M.' 8 ? primary 'Ozawa, M.' 9 ? primary 'Watanabe, T.' 10 ? primary 'Sakabe, S.' 11 ? primary 'Li, C.' 12 ? primary 'Kim, J.H.' 13 ? primary 'Myler, P.J.' 14 ? primary 'Phan, I.' 15 ? primary 'Raymond, A.' 16 ? primary 'Smith, E.' 17 ? primary 'Stacy, R.' 18 ? primary 'Nidom, C.A.' 19 ? primary 'Lank, S.M.' 20 ? primary 'Wiseman, R.W.' 21 ? primary 'Bimber, B.N.' 22 ? primary ;O'Connor, D.H. ; 23 ? primary 'Neumann, G.' 24 ? primary 'Stewart, L.J.' 25 ? primary 'Kawaoka, Y.' 26 ? # _cell.entry_id 3KC6 _cell.length_a 33.084 _cell.length_b 65.696 _cell.length_c 96.855 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3KC6 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Polymerase PB2' 22765.184 1 ? ? ? ? 2 non-polymer syn 1,2-ETHANEDIOL 62.068 3 ? ? ? ? 3 water nat water 18.015 92 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Polymerase basic subunit 2, Polymerase protein PB2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;EINGPESVLVNTYQWIIRNWETVKIQWSQDPTMLYNKMEFEPFQSLVPKAARGQYSGFVRTLFQQMRDVLGTFDTVQIIK LLPFAAAPPKQSRMQFSSLTVNVRGSGMRILVRGNSPVFNYNKATKRLTVLGKDAGALTEDPDEGTAGVESAVLRGFLIL GKEDKRYGPALSINELSNLAKGEKANVLIGQGDVVLVMKRKRDS ; _entity_poly.pdbx_seq_one_letter_code_can ;EINGPESVLVNTYQWIIRNWETVKIQWSQDPTMLYNKMEFEPFQSLVPKAARGQYSGFVRTLFQQMRDVLGTFDTVQIIK LLPFAAAPPKQSRMQFSSLTVNVRGSGMRILVRGNSPVFNYNKATKRLTVLGKDAGALTEDPDEGTAGVESAVLRGFLIL GKEDKRYGPALSINELSNLAKGEKANVLIGQGDVVLVMKRKRDS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier InvaD.07055.a # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 ILE n 1 3 ASN n 1 4 GLY n 1 5 PRO n 1 6 GLU n 1 7 SER n 1 8 VAL n 1 9 LEU n 1 10 VAL n 1 11 ASN n 1 12 THR n 1 13 TYR n 1 14 GLN n 1 15 TRP n 1 16 ILE n 1 17 ILE n 1 18 ARG n 1 19 ASN n 1 20 TRP n 1 21 GLU n 1 22 THR n 1 23 VAL n 1 24 LYS n 1 25 ILE n 1 26 GLN n 1 27 TRP n 1 28 SER n 1 29 GLN n 1 30 ASP n 1 31 PRO n 1 32 THR n 1 33 MET n 1 34 LEU n 1 35 TYR n 1 36 ASN n 1 37 LYS n 1 38 MET n 1 39 GLU n 1 40 PHE n 1 41 GLU n 1 42 PRO n 1 43 PHE n 1 44 GLN n 1 45 SER n 1 46 LEU n 1 47 VAL n 1 48 PRO n 1 49 LYS n 1 50 ALA n 1 51 ALA n 1 52 ARG n 1 53 GLY n 1 54 GLN n 1 55 TYR n 1 56 SER n 1 57 GLY n 1 58 PHE n 1 59 VAL n 1 60 ARG n 1 61 THR n 1 62 LEU n 1 63 PHE n 1 64 GLN n 1 65 GLN n 1 66 MET n 1 67 ARG n 1 68 ASP n 1 69 VAL n 1 70 LEU n 1 71 GLY n 1 72 THR n 1 73 PHE n 1 74 ASP n 1 75 THR n 1 76 VAL n 1 77 GLN n 1 78 ILE n 1 79 ILE n 1 80 LYS n 1 81 LEU n 1 82 LEU n 1 83 PRO n 1 84 PHE n 1 85 ALA n 1 86 ALA n 1 87 ALA n 1 88 PRO n 1 89 PRO n 1 90 LYS n 1 91 GLN n 1 92 SER n 1 93 ARG n 1 94 MET n 1 95 GLN n 1 96 PHE n 1 97 SER n 1 98 SER n 1 99 LEU n 1 100 THR n 1 101 VAL n 1 102 ASN n 1 103 VAL n 1 104 ARG n 1 105 GLY n 1 106 SER n 1 107 GLY n 1 108 MET n 1 109 ARG n 1 110 ILE n 1 111 LEU n 1 112 VAL n 1 113 ARG n 1 114 GLY n 1 115 ASN n 1 116 SER n 1 117 PRO n 1 118 VAL n 1 119 PHE n 1 120 ASN n 1 121 TYR n 1 122 ASN n 1 123 LYS n 1 124 ALA n 1 125 THR n 1 126 LYS n 1 127 ARG n 1 128 LEU n 1 129 THR n 1 130 VAL n 1 131 LEU n 1 132 GLY n 1 133 LYS n 1 134 ASP n 1 135 ALA n 1 136 GLY n 1 137 ALA n 1 138 LEU n 1 139 THR n 1 140 GLU n 1 141 ASP n 1 142 PRO n 1 143 ASP n 1 144 GLU n 1 145 GLY n 1 146 THR n 1 147 ALA n 1 148 GLY n 1 149 VAL n 1 150 GLU n 1 151 SER n 1 152 ALA n 1 153 VAL n 1 154 LEU n 1 155 ARG n 1 156 GLY n 1 157 PHE n 1 158 LEU n 1 159 ILE n 1 160 LEU n 1 161 GLY n 1 162 LYS n 1 163 GLU n 1 164 ASP n 1 165 LYS n 1 166 ARG n 1 167 TYR n 1 168 GLY n 1 169 PRO n 1 170 ALA n 1 171 LEU n 1 172 SER n 1 173 ILE n 1 174 ASN n 1 175 GLU n 1 176 LEU n 1 177 SER n 1 178 ASN n 1 179 LEU n 1 180 ALA n 1 181 LYS n 1 182 GLY n 1 183 GLU n 1 184 LYS n 1 185 ALA n 1 186 ASN n 1 187 VAL n 1 188 LEU n 1 189 ILE n 1 190 GLY n 1 191 GLN n 1 192 GLY n 1 193 ASP n 1 194 VAL n 1 195 VAL n 1 196 LEU n 1 197 VAL n 1 198 MET n 1 199 LYS n 1 200 ARG n 1 201 LYS n 1 202 ARG n 1 203 ASP n 1 204 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'A/Viet Nam/1203/2004(H5N1)' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene PB2 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'A/VIET NAM/1203/2004 (H5N1)' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Influenza A virus (A/Viet Nam/1203/2004(H5N1))' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 284218 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET28-SMT _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q6DNN3_9INFA _struct_ref.pdbx_db_accession Q6DNN3 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;EINGPESVLVNTYQWIIRNWETVKIQWSQDPTMLYNKMEFEPFQSLVPKAARGQYSGFVRTLFQQMRDVLGTFDTVQIIK LLPFAAAPPKQSRMQFSSLTVNVRGSGMRILVRGNSPVFNYNKATKRLTVLGKDAGALTEDPDEGTAGVESAVLRGFLIL GKEDKRYGPALSINELSNLAKGEKANVLIGQGDVVLVMKRKRDS ; _struct_ref.pdbx_align_begin 538 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3KC6 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 204 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q6DNN3 _struct_ref_seq.db_align_beg 538 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 741 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 538 _struct_ref_seq.pdbx_auth_seq_align_end 741 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3KC6 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.31 _exptl_crystal.density_percent_sol 46.79 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 10.50 _exptl_crystal_grow.pdbx_details ;5% SBOG, 100MM CAPS PH 10.5, 1.2 M SODIUM PHOSPHATE, 0.2 M LITHIUM PHOSPHATE, 0.8 M POTASSIUM PHOSPHATE. PROTEIN CONCENTRATION 8.25 MG/ML, VAPOR DIFFUSIONI, SITTING DROP, TEMPERATURE 293K, VAPOR DIFFUSION, SITTING DROP ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RIGAKU SATURN 944+' _diffrn_detector.pdbx_collection_date 2009-08-31 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54178 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU FR-E SUPERBRIGHT' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.54178 _diffrn_source.pdbx_wavelength_list 1.54178 # _reflns.entry_id 3KC6 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.000 _reflns.d_resolution_high 2.050 _reflns.number_obs 13728 _reflns.number_all ? _reflns.percent_possible_obs 98.7 _reflns.pdbx_Rmerge_I_obs 0.07900 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 9.1000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.600 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.05 _reflns_shell.d_res_low 2.09 _reflns_shell.percent_possible_all 88.5 _reflns_shell.Rmerge_I_obs 0.32800 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 4.00 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3KC6 _refine.ls_number_reflns_obs 13682 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 50.000 _refine.ls_d_res_high 2.05 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.204 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.202 _refine.ls_R_factor_R_free 0.245 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 684 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.941 _refine.correlation_coeff_Fo_to_Fc_free 0.921 _refine.B_iso_mean 9.38 _refine.aniso_B[1][1] 0.29000 _refine.aniso_B[2][2] -1.01000 _refine.aniso_B[3][3] 0.72000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE' _refine.pdbx_starting_model 3CW4 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.209 _refine.pdbx_overall_ESU_R_Free 0.181 _refine.overall_SU_ML 0.127 _refine.overall_SU_B 10.239 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1503 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 12 _refine_hist.number_atoms_solvent 92 _refine_hist.number_atoms_total 1607 _refine_hist.d_res_high 2.05 _refine_hist.d_res_low 50.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.010 0.022 ? 1540 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 1040 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.187 1.966 ? 2084 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.834 3.000 ? 2538 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.770 5.000 ? 196 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 35.820 24.531 ? 64 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.746 15.000 ? 251 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 20.226 15.000 ? 9 'X-RAY DIFFRACTION' ? r_chiral_restr 0.064 0.200 ? 238 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.021 ? 1712 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 302 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.582 1.500 ? 982 'X-RAY DIFFRACTION' ? r_mcbond_other 0.106 1.500 ? 401 'X-RAY DIFFRACTION' ? r_mcangle_it 1.054 2.000 ? 1572 'X-RAY DIFFRACTION' ? r_scbond_it 1.453 3.000 ? 558 'X-RAY DIFFRACTION' ? r_scangle_it 2.396 4.500 ? 512 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.05 _refine_ls_shell.d_res_low 2.10 _refine_ls_shell.number_reflns_R_work 855 _refine_ls_shell.R_factor_R_work 0.2040 _refine_ls_shell.percent_reflns_obs 91.08 _refine_ls_shell.R_factor_R_free 0.2360 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 54 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3KC6 _struct.title 'Crystal structure of the large c-terminal domain of polymerase basic protein 2 from influenza virus a/viet nam/1203/2004 (h5n1)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3KC6 _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' _struct_keywords.text ;Bird flu, structural genomics, NIAID, mRNA capping, mRNA processing, Seattle Structural Genomics Center for Infectious Disease, SSGCID, VIRAL PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? # _struct_biol.id 1 _struct_biol.details UNKNOWN # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 4 ? ASN A 19 ? GLY A 541 ASN A 556 1 ? 16 HELX_P HELX_P2 2 ASN A 19 ? ASP A 30 ? ASN A 556 ASP A 567 1 ? 12 HELX_P HELX_P3 3 ASP A 30 ? ASN A 36 ? ASP A 567 ASN A 573 1 ? 7 HELX_P HELX_P4 4 LYS A 37 ? GLU A 39 ? LYS A 574 GLU A 576 5 ? 3 HELX_P HELX_P5 5 PHE A 40 ? VAL A 47 ? PHE A 577 VAL A 584 1 ? 8 HELX_P HELX_P6 6 PRO A 48 ? ALA A 50 ? PRO A 585 ALA A 587 5 ? 3 HELX_P HELX_P7 7 ALA A 51 ? VAL A 69 ? ALA A 588 VAL A 606 1 ? 19 HELX_P HELX_P8 8 ASP A 74 ? LEU A 82 ? ASP A 611 LEU A 619 1 ? 9 HELX_P HELX_P9 9 PRO A 83 ? ALA A 87 ? PRO A 620 ALA A 624 5 ? 5 HELX_P HELX_P10 10 ASP A 164 ? GLY A 168 ? ASP A 701 GLY A 705 5 ? 5 HELX_P HELX_P11 11 SER A 172 ? LEU A 176 ? SER A 709 LEU A 713 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 3 ? C ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 98 ? VAL A 101 ? SER A 635 VAL A 638 A 2 MET A 108 ? LEU A 111 ? MET A 645 LEU A 648 B 1 PHE A 119 ? ASN A 122 ? PHE A 656 ASN A 659 B 2 ARG A 127 ? VAL A 130 ? ARG A 664 VAL A 667 B 3 LYS A 133 ? ALA A 137 ? LYS A 670 ALA A 674 C 1 PHE A 157 ? LYS A 162 ? PHE A 694 LYS A 699 C 2 ASP A 193 ? LYS A 199 ? ASP A 730 LYS A 736 C 3 LYS A 184 ? GLY A 190 ? LYS A 721 GLY A 727 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 99 ? N LEU A 636 O ILE A 110 ? O ILE A 647 B 1 2 N ASN A 122 ? N ASN A 659 O ARG A 127 ? O ARG A 664 B 2 3 N LEU A 128 ? N LEU A 665 O GLY A 136 ? O GLY A 673 C 1 2 N LEU A 160 ? N LEU A 697 O LEU A 196 ? O LEU A 733 C 2 3 O VAL A 197 ? O VAL A 734 N ALA A 185 ? N ALA A 722 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A EDO 1 ? 3 'BINDING SITE FOR RESIDUE EDO A 1' AC2 Software A EDO 3 ? 8 'BINDING SITE FOR RESIDUE EDO A 3' AC3 Software A EDO 4 ? 3 'BINDING SITE FOR RESIDUE EDO A 4' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 MET A 108 ? MET A 645 . ? 1_555 ? 2 AC1 3 ARG A 109 ? ARG A 646 . ? 1_555 ? 3 AC1 3 THR A 139 ? THR A 676 . ? 1_455 ? 4 AC2 8 HOH E . ? HOH A 16 . ? 3_554 ? 5 AC2 8 HOH E . ? HOH A 34 . ? 1_555 ? 6 AC2 8 HOH E . ? HOH A 90 . ? 1_555 ? 7 AC2 8 ARG A 52 ? ARG A 589 . ? 1_555 ? 8 AC2 8 GLY A 53 ? GLY A 590 . ? 1_555 ? 9 AC2 8 ALA A 87 ? ALA A 624 . ? 1_555 ? 10 AC2 8 PRO A 88 ? PRO A 625 . ? 1_555 ? 11 AC2 8 THR A 125 ? THR A 662 . ? 3_554 ? 12 AC3 3 LYS A 37 ? LYS A 574 . ? 1_555 ? 13 AC3 3 MET A 38 ? MET A 575 . ? 1_555 ? 14 AC3 3 GLU A 39 ? GLU A 576 . ? 1_555 ? # _database_PDB_matrix.entry_id 3KC6 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3KC6 _atom_sites.fract_transf_matrix[1][1] 0.030226 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015222 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010325 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 538 ? ? ? A . n A 1 2 ILE 2 539 ? ? ? A . n A 1 3 ASN 3 540 540 ASN ASN A . n A 1 4 GLY 4 541 541 GLY GLY A . n A 1 5 PRO 5 542 542 PRO PRO A . n A 1 6 GLU 6 543 543 GLU GLU A . n A 1 7 SER 7 544 544 SER SER A . n A 1 8 VAL 8 545 545 VAL VAL A . n A 1 9 LEU 9 546 546 LEU LEU A . n A 1 10 VAL 10 547 547 VAL VAL A . n A 1 11 ASN 11 548 548 ASN ASN A . n A 1 12 THR 12 549 549 THR THR A . n A 1 13 TYR 13 550 550 TYR TYR A . n A 1 14 GLN 14 551 551 GLN GLN A . n A 1 15 TRP 15 552 552 TRP TRP A . n A 1 16 ILE 16 553 553 ILE ILE A . n A 1 17 ILE 17 554 554 ILE ILE A . n A 1 18 ARG 18 555 555 ARG ARG A . n A 1 19 ASN 19 556 556 ASN ASN A . n A 1 20 TRP 20 557 557 TRP TRP A . n A 1 21 GLU 21 558 558 GLU GLU A . n A 1 22 THR 22 559 559 THR THR A . n A 1 23 VAL 23 560 560 VAL VAL A . n A 1 24 LYS 24 561 561 LYS LYS A . n A 1 25 ILE 25 562 562 ILE ILE A . n A 1 26 GLN 26 563 563 GLN GLN A . n A 1 27 TRP 27 564 564 TRP TRP A . n A 1 28 SER 28 565 565 SER SER A . n A 1 29 GLN 29 566 566 GLN GLN A . n A 1 30 ASP 30 567 567 ASP ASP A . n A 1 31 PRO 31 568 568 PRO PRO A . n A 1 32 THR 32 569 569 THR THR A . n A 1 33 MET 33 570 570 MET MET A . n A 1 34 LEU 34 571 571 LEU LEU A . n A 1 35 TYR 35 572 572 TYR TYR A . n A 1 36 ASN 36 573 573 ASN ASN A . n A 1 37 LYS 37 574 574 LYS LYS A . n A 1 38 MET 38 575 575 MET MET A . n A 1 39 GLU 39 576 576 GLU GLU A . n A 1 40 PHE 40 577 577 PHE PHE A . n A 1 41 GLU 41 578 578 GLU GLU A . n A 1 42 PRO 42 579 579 PRO PRO A . n A 1 43 PHE 43 580 580 PHE PHE A . n A 1 44 GLN 44 581 581 GLN GLN A . n A 1 45 SER 45 582 582 SER SER A . n A 1 46 LEU 46 583 583 LEU LEU A . n A 1 47 VAL 47 584 584 VAL VAL A . n A 1 48 PRO 48 585 585 PRO PRO A . n A 1 49 LYS 49 586 586 LYS LYS A . n A 1 50 ALA 50 587 587 ALA ALA A . n A 1 51 ALA 51 588 588 ALA ALA A . n A 1 52 ARG 52 589 589 ARG ARG A . n A 1 53 GLY 53 590 590 GLY GLY A . n A 1 54 GLN 54 591 591 GLN GLN A . n A 1 55 TYR 55 592 592 TYR TYR A . n A 1 56 SER 56 593 593 SER SER A . n A 1 57 GLY 57 594 594 GLY GLY A . n A 1 58 PHE 58 595 595 PHE PHE A . n A 1 59 VAL 59 596 596 VAL VAL A . n A 1 60 ARG 60 597 597 ARG ARG A . n A 1 61 THR 61 598 598 THR THR A . n A 1 62 LEU 62 599 599 LEU LEU A . n A 1 63 PHE 63 600 600 PHE PHE A . n A 1 64 GLN 64 601 601 GLN GLN A . n A 1 65 GLN 65 602 602 GLN GLN A . n A 1 66 MET 66 603 603 MET MET A . n A 1 67 ARG 67 604 604 ARG ARG A . n A 1 68 ASP 68 605 605 ASP ASP A . n A 1 69 VAL 69 606 606 VAL VAL A . n A 1 70 LEU 70 607 607 LEU LEU A . n A 1 71 GLY 71 608 608 GLY GLY A . n A 1 72 THR 72 609 609 THR THR A . n A 1 73 PHE 73 610 610 PHE PHE A . n A 1 74 ASP 74 611 611 ASP ASP A . n A 1 75 THR 75 612 612 THR THR A . n A 1 76 VAL 76 613 613 VAL VAL A . n A 1 77 GLN 77 614 614 GLN GLN A . n A 1 78 ILE 78 615 615 ILE ILE A . n A 1 79 ILE 79 616 616 ILE ILE A . n A 1 80 LYS 80 617 617 LYS LYS A . n A 1 81 LEU 81 618 618 LEU LEU A . n A 1 82 LEU 82 619 619 LEU LEU A . n A 1 83 PRO 83 620 620 PRO PRO A . n A 1 84 PHE 84 621 621 PHE PHE A . n A 1 85 ALA 85 622 622 ALA ALA A . n A 1 86 ALA 86 623 623 ALA ALA A . n A 1 87 ALA 87 624 624 ALA ALA A . n A 1 88 PRO 88 625 625 PRO PRO A . n A 1 89 PRO 89 626 626 PRO PRO A . n A 1 90 LYS 90 627 627 LYS LYS A . n A 1 91 GLN 91 628 628 GLN GLN A . n A 1 92 SER 92 629 629 SER SER A . n A 1 93 ARG 93 630 630 ARG ARG A . n A 1 94 MET 94 631 631 MET MET A . n A 1 95 GLN 95 632 632 GLN GLN A . n A 1 96 PHE 96 633 633 PHE PHE A . n A 1 97 SER 97 634 634 SER SER A . n A 1 98 SER 98 635 635 SER SER A . n A 1 99 LEU 99 636 636 LEU LEU A . n A 1 100 THR 100 637 637 THR THR A . n A 1 101 VAL 101 638 638 VAL VAL A . n A 1 102 ASN 102 639 639 ASN ASN A . n A 1 103 VAL 103 640 640 VAL VAL A . n A 1 104 ARG 104 641 641 ARG ARG A . n A 1 105 GLY 105 642 ? ? ? A . n A 1 106 SER 106 643 ? ? ? A . n A 1 107 GLY 107 644 644 GLY GLY A . n A 1 108 MET 108 645 645 MET MET A . n A 1 109 ARG 109 646 646 ARG ARG A . n A 1 110 ILE 110 647 647 ILE ILE A . n A 1 111 LEU 111 648 648 LEU LEU A . n A 1 112 VAL 112 649 649 VAL VAL A . n A 1 113 ARG 113 650 650 ARG ARG A . n A 1 114 GLY 114 651 651 GLY GLY A . n A 1 115 ASN 115 652 652 ASN ASN A . n A 1 116 SER 116 653 653 SER SER A . n A 1 117 PRO 117 654 654 PRO PRO A . n A 1 118 VAL 118 655 655 VAL VAL A . n A 1 119 PHE 119 656 656 PHE PHE A . n A 1 120 ASN 120 657 657 ASN ASN A . n A 1 121 TYR 121 658 658 TYR TYR A . n A 1 122 ASN 122 659 659 ASN ASN A . n A 1 123 LYS 123 660 660 LYS LYS A . n A 1 124 ALA 124 661 661 ALA ALA A . n A 1 125 THR 125 662 662 THR THR A . n A 1 126 LYS 126 663 663 LYS LYS A . n A 1 127 ARG 127 664 664 ARG ARG A . n A 1 128 LEU 128 665 665 LEU LEU A . n A 1 129 THR 129 666 666 THR THR A . n A 1 130 VAL 130 667 667 VAL VAL A . n A 1 131 LEU 131 668 668 LEU LEU A . n A 1 132 GLY 132 669 669 GLY GLY A . n A 1 133 LYS 133 670 670 LYS LYS A . n A 1 134 ASP 134 671 671 ASP ASP A . n A 1 135 ALA 135 672 672 ALA ALA A . n A 1 136 GLY 136 673 673 GLY GLY A . n A 1 137 ALA 137 674 674 ALA ALA A . n A 1 138 LEU 138 675 675 LEU LEU A . n A 1 139 THR 139 676 676 THR THR A . n A 1 140 GLU 140 677 677 GLU GLU A . n A 1 141 ASP 141 678 678 ASP ASP A . n A 1 142 PRO 142 679 679 PRO PRO A . n A 1 143 ASP 143 680 680 ASP ASP A . n A 1 144 GLU 144 681 681 GLU GLU A . n A 1 145 GLY 145 682 682 GLY GLY A . n A 1 146 THR 146 683 683 THR THR A . n A 1 147 ALA 147 684 684 ALA ALA A . n A 1 148 GLY 148 685 685 GLY GLY A . n A 1 149 VAL 149 686 686 VAL VAL A . n A 1 150 GLU 150 687 687 GLU GLU A . n A 1 151 SER 151 688 688 SER SER A . n A 1 152 ALA 152 689 689 ALA ALA A . n A 1 153 VAL 153 690 690 VAL VAL A . n A 1 154 LEU 154 691 691 LEU LEU A . n A 1 155 ARG 155 692 692 ARG ARG A . n A 1 156 GLY 156 693 693 GLY GLY A . n A 1 157 PHE 157 694 694 PHE PHE A . n A 1 158 LEU 158 695 695 LEU LEU A . n A 1 159 ILE 159 696 696 ILE ILE A . n A 1 160 LEU 160 697 697 LEU LEU A . n A 1 161 GLY 161 698 698 GLY GLY A . n A 1 162 LYS 162 699 699 LYS LYS A . n A 1 163 GLU 163 700 700 GLU GLU A . n A 1 164 ASP 164 701 701 ASP ASP A . n A 1 165 LYS 165 702 702 LYS LYS A . n A 1 166 ARG 166 703 703 ARG ARG A . n A 1 167 TYR 167 704 704 TYR TYR A . n A 1 168 GLY 168 705 705 GLY GLY A . n A 1 169 PRO 169 706 706 PRO PRO A . n A 1 170 ALA 170 707 707 ALA ALA A . n A 1 171 LEU 171 708 708 LEU LEU A . n A 1 172 SER 172 709 709 SER SER A . n A 1 173 ILE 173 710 710 ILE ILE A . n A 1 174 ASN 174 711 711 ASN ASN A . n A 1 175 GLU 175 712 712 GLU GLU A . n A 1 176 LEU 176 713 713 LEU LEU A . n A 1 177 SER 177 714 714 SER SER A . n A 1 178 ASN 178 715 715 ASN ASN A . n A 1 179 LEU 179 716 716 LEU LEU A . n A 1 180 ALA 180 717 717 ALA ALA A . n A 1 181 LYS 181 718 718 LYS LYS A . n A 1 182 GLY 182 719 719 GLY GLY A . n A 1 183 GLU 183 720 720 GLU GLU A . n A 1 184 LYS 184 721 721 LYS LYS A . n A 1 185 ALA 185 722 722 ALA ALA A . n A 1 186 ASN 186 723 723 ASN ASN A . n A 1 187 VAL 187 724 724 VAL VAL A . n A 1 188 LEU 188 725 725 LEU LEU A . n A 1 189 ILE 189 726 726 ILE ILE A . n A 1 190 GLY 190 727 727 GLY GLY A . n A 1 191 GLN 191 728 728 GLN GLN A . n A 1 192 GLY 192 729 729 GLY GLY A . n A 1 193 ASP 193 730 730 ASP ASP A . n A 1 194 VAL 194 731 731 VAL VAL A . n A 1 195 VAL 195 732 732 VAL VAL A . n A 1 196 LEU 196 733 733 LEU LEU A . n A 1 197 VAL 197 734 734 VAL VAL A . n A 1 198 MET 198 735 735 MET MET A . n A 1 199 LYS 199 736 736 LYS LYS A . n A 1 200 ARG 200 737 737 ARG ARG A . n A 1 201 LYS 201 738 738 LYS LYS A . n A 1 202 ARG 202 739 739 ARG ARG A . n A 1 203 ASP 203 740 ? ? ? A . n A 1 204 SER 204 741 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Seattle Structural Genomics Center for Infectious Disease' _pdbx_SG_project.initial_of_center SSGCID # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO 1 1 1 EDO EDO A . C 2 EDO 1 3 3 EDO EDO A . D 2 EDO 1 4 4 EDO EDO A . E 3 HOH 1 2 2 HOH HOH A . E 3 HOH 2 5 5 HOH HOH A . E 3 HOH 3 6 6 HOH HOH A . E 3 HOH 4 7 7 HOH HOH A . E 3 HOH 5 8 8 HOH HOH A . E 3 HOH 6 9 9 HOH HOH A . E 3 HOH 7 10 10 HOH HOH A . E 3 HOH 8 11 11 HOH HOH A . E 3 HOH 9 12 12 HOH HOH A . E 3 HOH 10 13 13 HOH HOH A . E 3 HOH 11 14 14 HOH HOH A . E 3 HOH 12 15 15 HOH HOH A . E 3 HOH 13 16 16 HOH HOH A . E 3 HOH 14 17 17 HOH HOH A . E 3 HOH 15 18 18 HOH HOH A . E 3 HOH 16 19 19 HOH HOH A . E 3 HOH 17 20 20 HOH HOH A . E 3 HOH 18 21 21 HOH HOH A . E 3 HOH 19 22 22 HOH HOH A . E 3 HOH 20 23 23 HOH HOH A . E 3 HOH 21 24 24 HOH HOH A . E 3 HOH 22 25 25 HOH HOH A . E 3 HOH 23 26 26 HOH HOH A . E 3 HOH 24 27 27 HOH HOH A . E 3 HOH 25 28 28 HOH HOH A . E 3 HOH 26 29 29 HOH HOH A . E 3 HOH 27 30 30 HOH HOH A . E 3 HOH 28 31 31 HOH HOH A . E 3 HOH 29 32 32 HOH HOH A . E 3 HOH 30 33 33 HOH HOH A . E 3 HOH 31 34 34 HOH HOH A . E 3 HOH 32 35 35 HOH HOH A . E 3 HOH 33 36 36 HOH HOH A . E 3 HOH 34 37 37 HOH HOH A . E 3 HOH 35 38 38 HOH HOH A . E 3 HOH 36 39 39 HOH HOH A . E 3 HOH 37 40 40 HOH HOH A . E 3 HOH 38 41 41 HOH HOH A . E 3 HOH 39 42 42 HOH HOH A . E 3 HOH 40 43 43 HOH HOH A . E 3 HOH 41 44 44 HOH HOH A . E 3 HOH 42 45 45 HOH HOH A . E 3 HOH 43 46 46 HOH HOH A . E 3 HOH 44 47 47 HOH HOH A . E 3 HOH 45 48 48 HOH HOH A . E 3 HOH 46 49 49 HOH HOH A . E 3 HOH 47 50 50 HOH HOH A . E 3 HOH 48 51 51 HOH HOH A . E 3 HOH 49 52 52 HOH HOH A . E 3 HOH 50 53 53 HOH HOH A . E 3 HOH 51 54 54 HOH HOH A . E 3 HOH 52 55 55 HOH HOH A . E 3 HOH 53 56 56 HOH HOH A . E 3 HOH 54 57 57 HOH HOH A . E 3 HOH 55 58 58 HOH HOH A . E 3 HOH 56 59 59 HOH HOH A . E 3 HOH 57 60 60 HOH HOH A . E 3 HOH 58 61 61 HOH HOH A . E 3 HOH 59 62 62 HOH HOH A . E 3 HOH 60 63 63 HOH HOH A . E 3 HOH 61 64 64 HOH HOH A . E 3 HOH 62 65 65 HOH HOH A . E 3 HOH 63 66 66 HOH HOH A . E 3 HOH 64 67 67 HOH HOH A . E 3 HOH 65 68 68 HOH HOH A . E 3 HOH 66 69 69 HOH HOH A . E 3 HOH 67 70 70 HOH HOH A . E 3 HOH 68 71 71 HOH HOH A . E 3 HOH 69 72 72 HOH HOH A . E 3 HOH 70 73 73 HOH HOH A . E 3 HOH 71 74 74 HOH HOH A . E 3 HOH 72 75 75 HOH HOH A . E 3 HOH 73 76 76 HOH HOH A . E 3 HOH 74 77 77 HOH HOH A . E 3 HOH 75 78 78 HOH HOH A . E 3 HOH 76 79 79 HOH HOH A . E 3 HOH 77 80 80 HOH HOH A . E 3 HOH 78 81 81 HOH HOH A . E 3 HOH 79 82 82 HOH HOH A . E 3 HOH 80 83 83 HOH HOH A . E 3 HOH 81 84 84 HOH HOH A . E 3 HOH 82 85 85 HOH HOH A . E 3 HOH 83 86 86 HOH HOH A . E 3 HOH 84 87 87 HOH HOH A . E 3 HOH 85 88 88 HOH HOH A . E 3 HOH 86 89 89 HOH HOH A . E 3 HOH 87 90 90 HOH HOH A . E 3 HOH 88 91 91 HOH HOH A . E 3 HOH 89 92 92 HOH HOH A . E 3 HOH 90 742 1 HOH HOH A . E 3 HOH 91 743 3 HOH HOH A . E 3 HOH 92 744 4 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-03-09 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2011-08-10 4 'Structure model' 1 3 2012-05-23 5 'Structure model' 1 4 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Database references' 4 4 'Structure model' 'Database references' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' 8 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' chem_comp_atom 2 5 'Structure model' chem_comp_bond 3 5 'Structure model' database_2 4 5 'Structure model' pdbx_initial_refinement_model 5 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 2.6000 4.7270 -23.2730 0.1225 0.1342 0.1260 -0.0061 -0.0017 -0.0042 0.7838 3.3660 0.5261 -0.0723 0.2355 -0.4638 -0.0324 0.0008 0.0354 -0.2004 0.0758 -0.0197 -0.0071 0.0594 -0.0435 'X-RAY DIFFRACTION' 2 ? refined -5.5730 -2.8360 -19.0350 0.0744 0.1255 0.1917 -0.0206 0.0020 0.0243 1.6428 5.6196 1.2829 -1.8950 0.6355 0.0332 0.0051 0.1152 -0.1702 0.1930 0.0607 0.5253 0.1483 -0.0515 -0.0659 'X-RAY DIFFRACTION' 3 ? refined 3.9380 -2.8300 -14.2150 0.1333 0.1425 0.1334 0.0359 -0.0379 0.0054 0.5388 4.2070 0.7221 0.2776 -0.5311 0.6944 0.0118 -0.1009 -0.1536 0.2994 0.0799 -0.2602 -0.0424 0.0590 -0.0917 'X-RAY DIFFRACTION' 4 ? refined -9.6770 3.4700 -0.2530 0.2112 0.1713 0.0126 0.0943 0.0624 0.0262 4.5598 6.6891 6.2027 0.9129 -2.2607 -1.4678 0.0536 -0.2953 -0.1336 0.2848 -0.0336 0.2017 -0.2196 -0.3007 -0.0201 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 540 ? ? A 626 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 627 ? ? A 663 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 664 ? ? A 696 ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 697 ? ? A 739 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal StructureStudio 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.5.0104 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OG1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 THR _pdbx_validate_close_contact.auth_seq_id_1 637 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 92 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.19 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id GLN _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 728 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 52.14 _pdbx_validate_torsion.psi -135.01 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A MET 575 ? CG ? A MET 38 CG 2 1 Y 1 A MET 575 ? SD ? A MET 38 SD 3 1 Y 1 A MET 575 ? CE ? A MET 38 CE 4 1 Y 1 A LYS 586 ? CG ? A LYS 49 CG 5 1 Y 1 A LYS 586 ? CD ? A LYS 49 CD 6 1 Y 1 A LYS 586 ? CE ? A LYS 49 CE 7 1 Y 1 A LYS 586 ? NZ ? A LYS 49 NZ 8 1 Y 1 A LEU 607 ? CG ? A LEU 70 CG 9 1 Y 1 A LEU 607 ? CD1 ? A LEU 70 CD1 10 1 Y 1 A LEU 607 ? CD2 ? A LEU 70 CD2 11 1 Y 1 A ARG 630 ? CG ? A ARG 93 CG 12 1 Y 1 A ARG 630 ? CD ? A ARG 93 CD 13 1 Y 1 A ARG 630 ? NE ? A ARG 93 NE 14 1 Y 1 A ARG 630 ? CZ ? A ARG 93 CZ 15 1 Y 1 A ARG 630 ? NH1 ? A ARG 93 NH1 16 1 Y 1 A ARG 630 ? NH2 ? A ARG 93 NH2 17 1 Y 1 A ARG 641 ? CG ? A ARG 104 CG 18 1 Y 1 A ARG 641 ? CD ? A ARG 104 CD 19 1 Y 1 A ARG 641 ? NE ? A ARG 104 NE 20 1 Y 1 A ARG 641 ? CZ ? A ARG 104 CZ 21 1 Y 1 A ARG 641 ? NH1 ? A ARG 104 NH1 22 1 Y 1 A ARG 641 ? NH2 ? A ARG 104 NH2 23 1 Y 1 A ARG 646 ? CG ? A ARG 109 CG 24 1 Y 1 A ARG 646 ? CD ? A ARG 109 CD 25 1 Y 1 A ARG 646 ? NE ? A ARG 109 NE 26 1 Y 1 A ARG 646 ? CZ ? A ARG 109 CZ 27 1 Y 1 A ARG 646 ? NH1 ? A ARG 109 NH1 28 1 Y 1 A ARG 646 ? NH2 ? A ARG 109 NH2 29 1 Y 1 A LYS 660 ? CG ? A LYS 123 CG 30 1 Y 1 A LYS 660 ? CD ? A LYS 123 CD 31 1 Y 1 A LYS 660 ? CE ? A LYS 123 CE 32 1 Y 1 A LYS 660 ? NZ ? A LYS 123 NZ 33 1 Y 1 A LYS 663 ? CG ? A LYS 126 CG 34 1 Y 1 A LYS 663 ? CD ? A LYS 126 CD 35 1 Y 1 A LYS 663 ? CE ? A LYS 126 CE 36 1 Y 1 A LYS 663 ? NZ ? A LYS 126 NZ 37 1 Y 1 A GLU 677 ? CG ? A GLU 140 CG 38 1 Y 1 A GLU 677 ? CD ? A GLU 140 CD 39 1 Y 1 A GLU 677 ? OE1 ? A GLU 140 OE1 40 1 Y 1 A GLU 677 ? OE2 ? A GLU 140 OE2 41 1 Y 1 A LYS 702 ? CG ? A LYS 165 CG 42 1 Y 1 A LYS 702 ? CD ? A LYS 165 CD 43 1 Y 1 A LYS 702 ? CE ? A LYS 165 CE 44 1 Y 1 A LYS 702 ? NZ ? A LYS 165 NZ 45 1 Y 1 A ASN 711 ? CG ? A ASN 174 CG 46 1 Y 1 A ASN 711 ? OD1 ? A ASN 174 OD1 47 1 Y 1 A ASN 711 ? ND2 ? A ASN 174 ND2 48 1 Y 1 A LEU 725 ? CG ? A LEU 188 CG 49 1 Y 1 A LEU 725 ? CD1 ? A LEU 188 CD1 50 1 Y 1 A LEU 725 ? CD2 ? A LEU 188 CD2 51 1 Y 1 A ARG 739 ? CG ? A ARG 202 CG 52 1 Y 1 A ARG 739 ? CD ? A ARG 202 CD 53 1 Y 1 A ARG 739 ? NE ? A ARG 202 NE 54 1 Y 1 A ARG 739 ? CZ ? A ARG 202 CZ 55 1 Y 1 A ARG 739 ? NH1 ? A ARG 202 NH1 56 1 Y 1 A ARG 739 ? NH2 ? A ARG 202 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU 538 ? A GLU 1 2 1 Y 1 A ILE 539 ? A ILE 2 3 1 Y 1 A GLY 642 ? A GLY 105 4 1 Y 1 A SER 643 ? A SER 106 5 1 Y 1 A ASP 740 ? A ASP 203 6 1 Y 1 A SER 741 ? A SER 204 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 EDO C1 C N N 74 EDO O1 O N N 75 EDO C2 C N N 76 EDO O2 O N N 77 EDO H11 H N N 78 EDO H12 H N N 79 EDO HO1 H N N 80 EDO H21 H N N 81 EDO H22 H N N 82 EDO HO2 H N N 83 GLN N N N N 84 GLN CA C N S 85 GLN C C N N 86 GLN O O N N 87 GLN CB C N N 88 GLN CG C N N 89 GLN CD C N N 90 GLN OE1 O N N 91 GLN NE2 N N N 92 GLN OXT O N N 93 GLN H H N N 94 GLN H2 H N N 95 GLN HA H N N 96 GLN HB2 H N N 97 GLN HB3 H N N 98 GLN HG2 H N N 99 GLN HG3 H N N 100 GLN HE21 H N N 101 GLN HE22 H N N 102 GLN HXT H N N 103 GLU N N N N 104 GLU CA C N S 105 GLU C C N N 106 GLU O O N N 107 GLU CB C N N 108 GLU CG C N N 109 GLU CD C N N 110 GLU OE1 O N N 111 GLU OE2 O N N 112 GLU OXT O N N 113 GLU H H N N 114 GLU H2 H N N 115 GLU HA H N N 116 GLU HB2 H N N 117 GLU HB3 H N N 118 GLU HG2 H N N 119 GLU HG3 H N N 120 GLU HE2 H N N 121 GLU HXT H N N 122 GLY N N N N 123 GLY CA C N N 124 GLY C C N N 125 GLY O O N N 126 GLY OXT O N N 127 GLY H H N N 128 GLY H2 H N N 129 GLY HA2 H N N 130 GLY HA3 H N N 131 GLY HXT H N N 132 HOH O O N N 133 HOH H1 H N N 134 HOH H2 H N N 135 ILE N N N N 136 ILE CA C N S 137 ILE C C N N 138 ILE O O N N 139 ILE CB C N S 140 ILE CG1 C N N 141 ILE CG2 C N N 142 ILE CD1 C N N 143 ILE OXT O N N 144 ILE H H N N 145 ILE H2 H N N 146 ILE HA H N N 147 ILE HB H N N 148 ILE HG12 H N N 149 ILE HG13 H N N 150 ILE HG21 H N N 151 ILE HG22 H N N 152 ILE HG23 H N N 153 ILE HD11 H N N 154 ILE HD12 H N N 155 ILE HD13 H N N 156 ILE HXT H N N 157 LEU N N N N 158 LEU CA C N S 159 LEU C C N N 160 LEU O O N N 161 LEU CB C N N 162 LEU CG C N N 163 LEU CD1 C N N 164 LEU CD2 C N N 165 LEU OXT O N N 166 LEU H H N N 167 LEU H2 H N N 168 LEU HA H N N 169 LEU HB2 H N N 170 LEU HB3 H N N 171 LEU HG H N N 172 LEU HD11 H N N 173 LEU HD12 H N N 174 LEU HD13 H N N 175 LEU HD21 H N N 176 LEU HD22 H N N 177 LEU HD23 H N N 178 LEU HXT H N N 179 LYS N N N N 180 LYS CA C N S 181 LYS C C N N 182 LYS O O N N 183 LYS CB C N N 184 LYS CG C N N 185 LYS CD C N N 186 LYS CE C N N 187 LYS NZ N N N 188 LYS OXT O N N 189 LYS H H N N 190 LYS H2 H N N 191 LYS HA H N N 192 LYS HB2 H N N 193 LYS HB3 H N N 194 LYS HG2 H N N 195 LYS HG3 H N N 196 LYS HD2 H N N 197 LYS HD3 H N N 198 LYS HE2 H N N 199 LYS HE3 H N N 200 LYS HZ1 H N N 201 LYS HZ2 H N N 202 LYS HZ3 H N N 203 LYS HXT H N N 204 MET N N N N 205 MET CA C N S 206 MET C C N N 207 MET O O N N 208 MET CB C N N 209 MET CG C N N 210 MET SD S N N 211 MET CE C N N 212 MET OXT O N N 213 MET H H N N 214 MET H2 H N N 215 MET HA H N N 216 MET HB2 H N N 217 MET HB3 H N N 218 MET HG2 H N N 219 MET HG3 H N N 220 MET HE1 H N N 221 MET HE2 H N N 222 MET HE3 H N N 223 MET HXT H N N 224 PHE N N N N 225 PHE CA C N S 226 PHE C C N N 227 PHE O O N N 228 PHE CB C N N 229 PHE CG C Y N 230 PHE CD1 C Y N 231 PHE CD2 C Y N 232 PHE CE1 C Y N 233 PHE CE2 C Y N 234 PHE CZ C Y N 235 PHE OXT O N N 236 PHE H H N N 237 PHE H2 H N N 238 PHE HA H N N 239 PHE HB2 H N N 240 PHE HB3 H N N 241 PHE HD1 H N N 242 PHE HD2 H N N 243 PHE HE1 H N N 244 PHE HE2 H N N 245 PHE HZ H N N 246 PHE HXT H N N 247 PRO N N N N 248 PRO CA C N S 249 PRO C C N N 250 PRO O O N N 251 PRO CB C N N 252 PRO CG C N N 253 PRO CD C N N 254 PRO OXT O N N 255 PRO H H N N 256 PRO HA H N N 257 PRO HB2 H N N 258 PRO HB3 H N N 259 PRO HG2 H N N 260 PRO HG3 H N N 261 PRO HD2 H N N 262 PRO HD3 H N N 263 PRO HXT H N N 264 SER N N N N 265 SER CA C N S 266 SER C C N N 267 SER O O N N 268 SER CB C N N 269 SER OG O N N 270 SER OXT O N N 271 SER H H N N 272 SER H2 H N N 273 SER HA H N N 274 SER HB2 H N N 275 SER HB3 H N N 276 SER HG H N N 277 SER HXT H N N 278 THR N N N N 279 THR CA C N S 280 THR C C N N 281 THR O O N N 282 THR CB C N R 283 THR OG1 O N N 284 THR CG2 C N N 285 THR OXT O N N 286 THR H H N N 287 THR H2 H N N 288 THR HA H N N 289 THR HB H N N 290 THR HG1 H N N 291 THR HG21 H N N 292 THR HG22 H N N 293 THR HG23 H N N 294 THR HXT H N N 295 TRP N N N N 296 TRP CA C N S 297 TRP C C N N 298 TRP O O N N 299 TRP CB C N N 300 TRP CG C Y N 301 TRP CD1 C Y N 302 TRP CD2 C Y N 303 TRP NE1 N Y N 304 TRP CE2 C Y N 305 TRP CE3 C Y N 306 TRP CZ2 C Y N 307 TRP CZ3 C Y N 308 TRP CH2 C Y N 309 TRP OXT O N N 310 TRP H H N N 311 TRP H2 H N N 312 TRP HA H N N 313 TRP HB2 H N N 314 TRP HB3 H N N 315 TRP HD1 H N N 316 TRP HE1 H N N 317 TRP HE3 H N N 318 TRP HZ2 H N N 319 TRP HZ3 H N N 320 TRP HH2 H N N 321 TRP HXT H N N 322 TYR N N N N 323 TYR CA C N S 324 TYR C C N N 325 TYR O O N N 326 TYR CB C N N 327 TYR CG C Y N 328 TYR CD1 C Y N 329 TYR CD2 C Y N 330 TYR CE1 C Y N 331 TYR CE2 C Y N 332 TYR CZ C Y N 333 TYR OH O N N 334 TYR OXT O N N 335 TYR H H N N 336 TYR H2 H N N 337 TYR HA H N N 338 TYR HB2 H N N 339 TYR HB3 H N N 340 TYR HD1 H N N 341 TYR HD2 H N N 342 TYR HE1 H N N 343 TYR HE2 H N N 344 TYR HH H N N 345 TYR HXT H N N 346 VAL N N N N 347 VAL CA C N S 348 VAL C C N N 349 VAL O O N N 350 VAL CB C N N 351 VAL CG1 C N N 352 VAL CG2 C N N 353 VAL OXT O N N 354 VAL H H N N 355 VAL H2 H N N 356 VAL HA H N N 357 VAL HB H N N 358 VAL HG11 H N N 359 VAL HG12 H N N 360 VAL HG13 H N N 361 VAL HG21 H N N 362 VAL HG22 H N N 363 VAL HG23 H N N 364 VAL HXT H N N 365 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 EDO C1 O1 sing N N 70 EDO C1 C2 sing N N 71 EDO C1 H11 sing N N 72 EDO C1 H12 sing N N 73 EDO O1 HO1 sing N N 74 EDO C2 O2 sing N N 75 EDO C2 H21 sing N N 76 EDO C2 H22 sing N N 77 EDO O2 HO2 sing N N 78 GLN N CA sing N N 79 GLN N H sing N N 80 GLN N H2 sing N N 81 GLN CA C sing N N 82 GLN CA CB sing N N 83 GLN CA HA sing N N 84 GLN C O doub N N 85 GLN C OXT sing N N 86 GLN CB CG sing N N 87 GLN CB HB2 sing N N 88 GLN CB HB3 sing N N 89 GLN CG CD sing N N 90 GLN CG HG2 sing N N 91 GLN CG HG3 sing N N 92 GLN CD OE1 doub N N 93 GLN CD NE2 sing N N 94 GLN NE2 HE21 sing N N 95 GLN NE2 HE22 sing N N 96 GLN OXT HXT sing N N 97 GLU N CA sing N N 98 GLU N H sing N N 99 GLU N H2 sing N N 100 GLU CA C sing N N 101 GLU CA CB sing N N 102 GLU CA HA sing N N 103 GLU C O doub N N 104 GLU C OXT sing N N 105 GLU CB CG sing N N 106 GLU CB HB2 sing N N 107 GLU CB HB3 sing N N 108 GLU CG CD sing N N 109 GLU CG HG2 sing N N 110 GLU CG HG3 sing N N 111 GLU CD OE1 doub N N 112 GLU CD OE2 sing N N 113 GLU OE2 HE2 sing N N 114 GLU OXT HXT sing N N 115 GLY N CA sing N N 116 GLY N H sing N N 117 GLY N H2 sing N N 118 GLY CA C sing N N 119 GLY CA HA2 sing N N 120 GLY CA HA3 sing N N 121 GLY C O doub N N 122 GLY C OXT sing N N 123 GLY OXT HXT sing N N 124 HOH O H1 sing N N 125 HOH O H2 sing N N 126 ILE N CA sing N N 127 ILE N H sing N N 128 ILE N H2 sing N N 129 ILE CA C sing N N 130 ILE CA CB sing N N 131 ILE CA HA sing N N 132 ILE C O doub N N 133 ILE C OXT sing N N 134 ILE CB CG1 sing N N 135 ILE CB CG2 sing N N 136 ILE CB HB sing N N 137 ILE CG1 CD1 sing N N 138 ILE CG1 HG12 sing N N 139 ILE CG1 HG13 sing N N 140 ILE CG2 HG21 sing N N 141 ILE CG2 HG22 sing N N 142 ILE CG2 HG23 sing N N 143 ILE CD1 HD11 sing N N 144 ILE CD1 HD12 sing N N 145 ILE CD1 HD13 sing N N 146 ILE OXT HXT sing N N 147 LEU N CA sing N N 148 LEU N H sing N N 149 LEU N H2 sing N N 150 LEU CA C sing N N 151 LEU CA CB sing N N 152 LEU CA HA sing N N 153 LEU C O doub N N 154 LEU C OXT sing N N 155 LEU CB CG sing N N 156 LEU CB HB2 sing N N 157 LEU CB HB3 sing N N 158 LEU CG CD1 sing N N 159 LEU CG CD2 sing N N 160 LEU CG HG sing N N 161 LEU CD1 HD11 sing N N 162 LEU CD1 HD12 sing N N 163 LEU CD1 HD13 sing N N 164 LEU CD2 HD21 sing N N 165 LEU CD2 HD22 sing N N 166 LEU CD2 HD23 sing N N 167 LEU OXT HXT sing N N 168 LYS N CA sing N N 169 LYS N H sing N N 170 LYS N H2 sing N N 171 LYS CA C sing N N 172 LYS CA CB sing N N 173 LYS CA HA sing N N 174 LYS C O doub N N 175 LYS C OXT sing N N 176 LYS CB CG sing N N 177 LYS CB HB2 sing N N 178 LYS CB HB3 sing N N 179 LYS CG CD sing N N 180 LYS CG HG2 sing N N 181 LYS CG HG3 sing N N 182 LYS CD CE sing N N 183 LYS CD HD2 sing N N 184 LYS CD HD3 sing N N 185 LYS CE NZ sing N N 186 LYS CE HE2 sing N N 187 LYS CE HE3 sing N N 188 LYS NZ HZ1 sing N N 189 LYS NZ HZ2 sing N N 190 LYS NZ HZ3 sing N N 191 LYS OXT HXT sing N N 192 MET N CA sing N N 193 MET N H sing N N 194 MET N H2 sing N N 195 MET CA C sing N N 196 MET CA CB sing N N 197 MET CA HA sing N N 198 MET C O doub N N 199 MET C OXT sing N N 200 MET CB CG sing N N 201 MET CB HB2 sing N N 202 MET CB HB3 sing N N 203 MET CG SD sing N N 204 MET CG HG2 sing N N 205 MET CG HG3 sing N N 206 MET SD CE sing N N 207 MET CE HE1 sing N N 208 MET CE HE2 sing N N 209 MET CE HE3 sing N N 210 MET OXT HXT sing N N 211 PHE N CA sing N N 212 PHE N H sing N N 213 PHE N H2 sing N N 214 PHE CA C sing N N 215 PHE CA CB sing N N 216 PHE CA HA sing N N 217 PHE C O doub N N 218 PHE C OXT sing N N 219 PHE CB CG sing N N 220 PHE CB HB2 sing N N 221 PHE CB HB3 sing N N 222 PHE CG CD1 doub Y N 223 PHE CG CD2 sing Y N 224 PHE CD1 CE1 sing Y N 225 PHE CD1 HD1 sing N N 226 PHE CD2 CE2 doub Y N 227 PHE CD2 HD2 sing N N 228 PHE CE1 CZ doub Y N 229 PHE CE1 HE1 sing N N 230 PHE CE2 CZ sing Y N 231 PHE CE2 HE2 sing N N 232 PHE CZ HZ sing N N 233 PHE OXT HXT sing N N 234 PRO N CA sing N N 235 PRO N CD sing N N 236 PRO N H sing N N 237 PRO CA C sing N N 238 PRO CA CB sing N N 239 PRO CA HA sing N N 240 PRO C O doub N N 241 PRO C OXT sing N N 242 PRO CB CG sing N N 243 PRO CB HB2 sing N N 244 PRO CB HB3 sing N N 245 PRO CG CD sing N N 246 PRO CG HG2 sing N N 247 PRO CG HG3 sing N N 248 PRO CD HD2 sing N N 249 PRO CD HD3 sing N N 250 PRO OXT HXT sing N N 251 SER N CA sing N N 252 SER N H sing N N 253 SER N H2 sing N N 254 SER CA C sing N N 255 SER CA CB sing N N 256 SER CA HA sing N N 257 SER C O doub N N 258 SER C OXT sing N N 259 SER CB OG sing N N 260 SER CB HB2 sing N N 261 SER CB HB3 sing N N 262 SER OG HG sing N N 263 SER OXT HXT sing N N 264 THR N CA sing N N 265 THR N H sing N N 266 THR N H2 sing N N 267 THR CA C sing N N 268 THR CA CB sing N N 269 THR CA HA sing N N 270 THR C O doub N N 271 THR C OXT sing N N 272 THR CB OG1 sing N N 273 THR CB CG2 sing N N 274 THR CB HB sing N N 275 THR OG1 HG1 sing N N 276 THR CG2 HG21 sing N N 277 THR CG2 HG22 sing N N 278 THR CG2 HG23 sing N N 279 THR OXT HXT sing N N 280 TRP N CA sing N N 281 TRP N H sing N N 282 TRP N H2 sing N N 283 TRP CA C sing N N 284 TRP CA CB sing N N 285 TRP CA HA sing N N 286 TRP C O doub N N 287 TRP C OXT sing N N 288 TRP CB CG sing N N 289 TRP CB HB2 sing N N 290 TRP CB HB3 sing N N 291 TRP CG CD1 doub Y N 292 TRP CG CD2 sing Y N 293 TRP CD1 NE1 sing Y N 294 TRP CD1 HD1 sing N N 295 TRP CD2 CE2 doub Y N 296 TRP CD2 CE3 sing Y N 297 TRP NE1 CE2 sing Y N 298 TRP NE1 HE1 sing N N 299 TRP CE2 CZ2 sing Y N 300 TRP CE3 CZ3 doub Y N 301 TRP CE3 HE3 sing N N 302 TRP CZ2 CH2 doub Y N 303 TRP CZ2 HZ2 sing N N 304 TRP CZ3 CH2 sing Y N 305 TRP CZ3 HZ3 sing N N 306 TRP CH2 HH2 sing N N 307 TRP OXT HXT sing N N 308 TYR N CA sing N N 309 TYR N H sing N N 310 TYR N H2 sing N N 311 TYR CA C sing N N 312 TYR CA CB sing N N 313 TYR CA HA sing N N 314 TYR C O doub N N 315 TYR C OXT sing N N 316 TYR CB CG sing N N 317 TYR CB HB2 sing N N 318 TYR CB HB3 sing N N 319 TYR CG CD1 doub Y N 320 TYR CG CD2 sing Y N 321 TYR CD1 CE1 sing Y N 322 TYR CD1 HD1 sing N N 323 TYR CD2 CE2 doub Y N 324 TYR CD2 HD2 sing N N 325 TYR CE1 CZ doub Y N 326 TYR CE1 HE1 sing N N 327 TYR CE2 CZ sing Y N 328 TYR CE2 HE2 sing N N 329 TYR CZ OH sing N N 330 TYR OH HH sing N N 331 TYR OXT HXT sing N N 332 VAL N CA sing N N 333 VAL N H sing N N 334 VAL N H2 sing N N 335 VAL CA C sing N N 336 VAL CA CB sing N N 337 VAL CA HA sing N N 338 VAL C O doub N N 339 VAL C OXT sing N N 340 VAL CB CG1 sing N N 341 VAL CB CG2 sing N N 342 VAL CB HB sing N N 343 VAL CG1 HG11 sing N N 344 VAL CG1 HG12 sing N N 345 VAL CG1 HG13 sing N N 346 VAL CG2 HG21 sing N N 347 VAL CG2 HG22 sing N N 348 VAL CG2 HG23 sing N N 349 VAL OXT HXT sing N N 350 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 1,2-ETHANEDIOL EDO 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3CW4 _pdbx_initial_refinement_model.details ? #