HEADER VIRAL PROTEIN 20-OCT-09 3KC6 TITLE CRYSTAL STRUCTURE OF THE LARGE C-TERMINAL DOMAIN OF POLYMERASE BASIC TITLE 2 PROTEIN 2 FROM INFLUENZA VIRUS A/VIET NAM/1203/2004 (H5N1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE PB2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: POLYMERASE BASIC SUBUNIT 2, POLYMERASE PROTEIN PB2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS (A/VIET NAM/1203/2004(H5N1)); SOURCE 3 ORGANISM_COMMON: A/VIET NAM/1203/2004(H5N1); SOURCE 4 ORGANISM_TAXID: 284218; SOURCE 5 STRAIN: A/VIET NAM/1203/2004 (H5N1); SOURCE 6 GENE: PB2; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28-SMT KEYWDS BIRD FLU, STRUCTURAL GENOMICS, NIAID, MRNA CAPPING, MRNA PROCESSING, KEYWDS 2 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, SSGCID, KEYWDS 3 VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 5 06-SEP-23 3KC6 1 REMARK REVDAT 4 23-MAY-12 3KC6 1 JRNL REVDAT 3 10-AUG-11 3KC6 1 JRNL REVDAT 2 13-JUL-11 3KC6 1 VERSN REVDAT 1 09-MAR-10 3KC6 0 JRNL AUTH S.YAMADA,M.HATTA,B.L.STAKER,S.WATANABE,M.IMAI,K.SHINYA, JRNL AUTH 2 Y.SAKAI-TAGAWA,M.ITO,M.OZAWA,T.WATANABE,S.SAKABE,C.LI, JRNL AUTH 3 J.H.KIM,P.J.MYLER,I.PHAN,A.RAYMOND,E.SMITH,R.STACY, JRNL AUTH 4 C.A.NIDOM,S.M.LANK,R.W.WISEMAN,B.N.BIMBER,D.H.O'CONNOR, JRNL AUTH 5 G.NEUMANN,L.J.STEWART,Y.KAWAOKA JRNL TITL BIOLOGICAL AND STRUCTURAL CHARACTERIZATION OF A JRNL TITL 2 HOST-ADAPTING AMINO ACID IN INFLUENZA VIRUS. JRNL REF PLOS PATHOG. V. 6 01034 2010 JRNL REFN ISSN 1553-7366 JRNL PMID 20700447 JRNL DOI 10.1371/JOURNAL.PPAT.1001034 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0104 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 13682 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 684 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 855 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.08 REMARK 3 BIN R VALUE (WORKING SET) : 0.2040 REMARK 3 BIN FREE R VALUE SET COUNT : 54 REMARK 3 BIN FREE R VALUE : 0.2360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1503 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 92 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 9.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.29000 REMARK 3 B22 (A**2) : -1.01000 REMARK 3 B33 (A**2) : 0.72000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.209 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.181 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.127 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.239 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1540 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1040 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2084 ; 1.187 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2538 ; 0.834 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 196 ; 5.770 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 64 ;35.820 ;24.531 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 251 ;13.746 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;20.226 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 238 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1712 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 302 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 982 ; 0.582 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 401 ; 0.106 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1572 ; 1.054 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 558 ; 1.453 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 512 ; 2.396 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 540 A 626 REMARK 3 ORIGIN FOR THE GROUP (A): 2.6000 4.7270 -23.2730 REMARK 3 T TENSOR REMARK 3 T11: 0.1225 T22: 0.1342 REMARK 3 T33: 0.1260 T12: -0.0061 REMARK 3 T13: -0.0017 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 0.7838 L22: 3.3660 REMARK 3 L33: 0.5261 L12: -0.0723 REMARK 3 L13: 0.2355 L23: -0.4638 REMARK 3 S TENSOR REMARK 3 S11: -0.0324 S12: 0.0008 S13: 0.0354 REMARK 3 S21: -0.2004 S22: 0.0758 S23: -0.0197 REMARK 3 S31: -0.0071 S32: 0.0594 S33: -0.0435 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 627 A 663 REMARK 3 ORIGIN FOR THE GROUP (A): -5.5730 -2.8360 -19.0350 REMARK 3 T TENSOR REMARK 3 T11: 0.0744 T22: 0.1255 REMARK 3 T33: 0.1917 T12: -0.0206 REMARK 3 T13: 0.0020 T23: 0.0243 REMARK 3 L TENSOR REMARK 3 L11: 1.6428 L22: 5.6196 REMARK 3 L33: 1.2829 L12: -1.8950 REMARK 3 L13: 0.6355 L23: 0.0332 REMARK 3 S TENSOR REMARK 3 S11: 0.0051 S12: 0.1152 S13: -0.1702 REMARK 3 S21: 0.1930 S22: 0.0607 S23: 0.5253 REMARK 3 S31: 0.1483 S32: -0.0515 S33: -0.0659 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 664 A 696 REMARK 3 ORIGIN FOR THE GROUP (A): 3.9380 -2.8300 -14.2150 REMARK 3 T TENSOR REMARK 3 T11: 0.1333 T22: 0.1425 REMARK 3 T33: 0.1334 T12: 0.0359 REMARK 3 T13: -0.0379 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 0.5388 L22: 4.2070 REMARK 3 L33: 0.7221 L12: 0.2776 REMARK 3 L13: -0.5311 L23: 0.6944 REMARK 3 S TENSOR REMARK 3 S11: 0.0118 S12: -0.1009 S13: -0.1536 REMARK 3 S21: 0.2994 S22: 0.0799 S23: -0.2602 REMARK 3 S31: -0.0424 S32: 0.0590 S33: -0.0917 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 697 A 739 REMARK 3 ORIGIN FOR THE GROUP (A): -9.6770 3.4700 -0.2530 REMARK 3 T TENSOR REMARK 3 T11: 0.2112 T22: 0.1713 REMARK 3 T33: 0.0126 T12: 0.0943 REMARK 3 T13: 0.0624 T23: 0.0262 REMARK 3 L TENSOR REMARK 3 L11: 4.5598 L22: 6.6891 REMARK 3 L33: 6.2027 L12: 0.9129 REMARK 3 L13: -2.2607 L23: -1.4678 REMARK 3 S TENSOR REMARK 3 S11: 0.0536 S12: -0.2953 S13: -0.1336 REMARK 3 S21: 0.2848 S22: -0.0336 S23: 0.2017 REMARK 3 S31: -0.2196 S32: -0.3007 S33: -0.0201 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 4 REMARK 4 3KC6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000055807. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-AUG-09 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 10.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13728 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.32800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3CW4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5% SBOG, 100MM CAPS PH 10.5, 1.2 M REMARK 280 SODIUM PHOSPHATE, 0.2 M LITHIUM PHOSPHATE, 0.8 M POTASSIUM REMARK 280 PHOSPHATE. PROTEIN CONCENTRATION 8.25 MG/ML, VAPOR DIFFUSIONI, REMARK 280 SITTING DROP, TEMPERATURE 293K, VAPOR DIFFUSION, SITTING DROP, REMARK 280 PH 10.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 16.54200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.42750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.84800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.42750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 16.54200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.84800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: UNKNOWN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 538 REMARK 465 ILE A 539 REMARK 465 GLY A 642 REMARK 465 SER A 643 REMARK 465 ASP A 740 REMARK 465 SER A 741 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 575 CG SD CE REMARK 470 LYS A 586 CG CD CE NZ REMARK 470 LEU A 607 CG CD1 CD2 REMARK 470 ARG A 630 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 641 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 646 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 660 CG CD CE NZ REMARK 470 LYS A 663 CG CD CE NZ REMARK 470 GLU A 677 CG CD OE1 OE2 REMARK 470 LYS A 702 CG CD CE NZ REMARK 470 ASN A 711 CG OD1 ND2 REMARK 470 LEU A 725 CG CD1 CD2 REMARK 470 ARG A 739 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 637 O HOH A 92 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 728 -135.01 52.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: INVAD.07055.A RELATED DB: TARGETDB DBREF 3KC6 A 538 741 UNP Q6DNN3 Q6DNN3_9INFA 538 741 SEQRES 1 A 204 GLU ILE ASN GLY PRO GLU SER VAL LEU VAL ASN THR TYR SEQRES 2 A 204 GLN TRP ILE ILE ARG ASN TRP GLU THR VAL LYS ILE GLN SEQRES 3 A 204 TRP SER GLN ASP PRO THR MET LEU TYR ASN LYS MET GLU SEQRES 4 A 204 PHE GLU PRO PHE GLN SER LEU VAL PRO LYS ALA ALA ARG SEQRES 5 A 204 GLY GLN TYR SER GLY PHE VAL ARG THR LEU PHE GLN GLN SEQRES 6 A 204 MET ARG ASP VAL LEU GLY THR PHE ASP THR VAL GLN ILE SEQRES 7 A 204 ILE LYS LEU LEU PRO PHE ALA ALA ALA PRO PRO LYS GLN SEQRES 8 A 204 SER ARG MET GLN PHE SER SER LEU THR VAL ASN VAL ARG SEQRES 9 A 204 GLY SER GLY MET ARG ILE LEU VAL ARG GLY ASN SER PRO SEQRES 10 A 204 VAL PHE ASN TYR ASN LYS ALA THR LYS ARG LEU THR VAL SEQRES 11 A 204 LEU GLY LYS ASP ALA GLY ALA LEU THR GLU ASP PRO ASP SEQRES 12 A 204 GLU GLY THR ALA GLY VAL GLU SER ALA VAL LEU ARG GLY SEQRES 13 A 204 PHE LEU ILE LEU GLY LYS GLU ASP LYS ARG TYR GLY PRO SEQRES 14 A 204 ALA LEU SER ILE ASN GLU LEU SER ASN LEU ALA LYS GLY SEQRES 15 A 204 GLU LYS ALA ASN VAL LEU ILE GLY GLN GLY ASP VAL VAL SEQRES 16 A 204 LEU VAL MET LYS ARG LYS ARG ASP SER HET EDO A 1 4 HET EDO A 3 4 HET EDO A 4 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO 3(C2 H6 O2) FORMUL 5 HOH *92(H2 O) HELIX 1 1 GLY A 541 ASN A 556 1 16 HELIX 2 2 ASN A 556 ASP A 567 1 12 HELIX 3 3 ASP A 567 ASN A 573 1 7 HELIX 4 4 LYS A 574 GLU A 576 5 3 HELIX 5 5 PHE A 577 VAL A 584 1 8 HELIX 6 6 PRO A 585 ALA A 587 5 3 HELIX 7 7 ALA A 588 VAL A 606 1 19 HELIX 8 8 ASP A 611 LEU A 619 1 9 HELIX 9 9 PRO A 620 ALA A 624 5 5 HELIX 10 10 ASP A 701 GLY A 705 5 5 HELIX 11 11 SER A 709 LEU A 713 5 5 SHEET 1 A 2 SER A 635 VAL A 638 0 SHEET 2 A 2 MET A 645 LEU A 648 -1 O ILE A 647 N LEU A 636 SHEET 1 B 3 PHE A 656 ASN A 659 0 SHEET 2 B 3 ARG A 664 VAL A 667 -1 O ARG A 664 N ASN A 659 SHEET 3 B 3 LYS A 670 ALA A 674 -1 O GLY A 673 N LEU A 665 SHEET 1 C 3 PHE A 694 LYS A 699 0 SHEET 2 C 3 ASP A 730 LYS A 736 -1 O LEU A 733 N LEU A 697 SHEET 3 C 3 LYS A 721 GLY A 727 -1 N ALA A 722 O VAL A 734 SITE 1 AC1 3 MET A 645 ARG A 646 THR A 676 SITE 1 AC2 8 HOH A 16 HOH A 34 HOH A 90 ARG A 589 SITE 2 AC2 8 GLY A 590 ALA A 624 PRO A 625 THR A 662 SITE 1 AC3 3 LYS A 574 MET A 575 GLU A 576 CRYST1 33.084 65.696 96.855 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.030226 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015222 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010325 0.00000