HEADER TRANSFERASE 21-OCT-09 3KCQ TITLE CRYSTAL STRUCTURE OF PHOSPHORIBOSYLGLYCINAMIDE FORMYLTRANSFERASE FROM TITLE 2 ANAPLASMA PHAGOCYTOPHILUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHORIBOSYLGLYCINAMIDE FORMYLTRANSFERASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 2.1.2.2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ANAPLASMA PHAGOCYTOPHILUM; SOURCE 3 ORGANISM_TAXID: 212042; SOURCE 4 STRAIN: HZ; SOURCE 5 GENE: PURN, APH_0230; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS STRUCTURAL GENOMICS, NIAID, TRANSFERASE, SEATTLE STRUCTURAL GENOMICS KEYWDS 2 CENTER FOR INFECTIOUS DISEASE, SSGCID EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 06-SEP-23 3KCQ 1 REMARK SEQADV REVDAT 2 13-JUL-11 3KCQ 1 VERSN REVDAT 1 15-DEC-09 3KCQ 0 JRNL AUTH B.L.STAKER,T.EDWARDS,M.DIETERICH, JRNL AUTH 2 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE JRNL AUTH 3 (SSGCID) JRNL TITL CRYSTAL STRUCTURE OF PHOSPHORIBOSYLGLYCINAMIDE JRNL TITL 2 FORMYLTRANSFERASE FROM ANAPLASMA PHAGOCYTOPHILUM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0104 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 45777 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2324 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.25 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2896 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 76.74 REMARK 3 BIN R VALUE (WORKING SET) : 0.2510 REMARK 3 BIN FREE R VALUE SET COUNT : 182 REMARK 3 BIN FREE R VALUE : 0.3040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6231 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 205 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.65000 REMARK 3 B22 (A**2) : -1.35000 REMARK 3 B33 (A**2) : 3.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.29000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.300 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.240 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.170 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.856 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.904 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6361 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4181 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8629 ; 1.366 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10295 ; 0.901 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 817 ; 5.915 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 246 ;40.084 ;24.512 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1070 ;16.716 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;16.149 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1035 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7009 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1194 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4093 ; 0.623 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1664 ; 0.134 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6579 ; 1.154 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2268 ; 1.758 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2050 ; 2.844 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 210 REMARK 3 RESIDUE RANGE : A 801 A 801 REMARK 3 ORIGIN FOR THE GROUP (A): 20.8110 62.6840 13.3510 REMARK 3 T TENSOR REMARK 3 T11: 0.2557 T22: 0.0388 REMARK 3 T33: 0.0341 T12: 0.0499 REMARK 3 T13: -0.0624 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 0.7631 L22: 2.8097 REMARK 3 L33: 2.2353 L12: 0.3679 REMARK 3 L13: 0.2303 L23: 1.3006 REMARK 3 S TENSOR REMARK 3 S11: -0.0825 S12: -0.1006 S13: -0.0051 REMARK 3 S21: 0.0110 S22: -0.0562 S23: 0.1856 REMARK 3 S31: -0.0605 S32: -0.0236 S33: 0.1387 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 209 REMARK 3 RESIDUE RANGE : B 801 B 801 REMARK 3 ORIGIN FOR THE GROUP (A): 45.4130 58.4210 55.1310 REMARK 3 T TENSOR REMARK 3 T11: 0.2745 T22: 0.0666 REMARK 3 T33: 0.0490 T12: -0.0317 REMARK 3 T13: 0.0714 T23: 0.0120 REMARK 3 L TENSOR REMARK 3 L11: 1.2840 L22: 3.7769 REMARK 3 L33: 3.7046 L12: -0.8492 REMARK 3 L13: -0.7376 L23: 3.0238 REMARK 3 S TENSOR REMARK 3 S11: -0.1234 S12: 0.1032 S13: -0.0315 REMARK 3 S21: 0.1363 S22: -0.0837 S23: 0.2751 REMARK 3 S31: 0.3156 S32: -0.0596 S33: 0.2071 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 3 C 211 REMARK 3 RESIDUE RANGE : D 801 D 801 REMARK 3 ORIGIN FOR THE GROUP (A): 48.7640 40.4390 14.9490 REMARK 3 T TENSOR REMARK 3 T11: 0.1877 T22: 0.0154 REMARK 3 T33: 0.0380 T12: 0.0237 REMARK 3 T13: -0.0407 T23: 0.0034 REMARK 3 L TENSOR REMARK 3 L11: 0.5593 L22: 1.4960 REMARK 3 L33: 3.1199 L12: -0.0775 REMARK 3 L13: 0.5622 L23: -1.1699 REMARK 3 S TENSOR REMARK 3 S11: -0.0441 S12: 0.0126 S13: 0.0464 REMARK 3 S21: 0.0489 S22: -0.0284 S23: -0.1114 REMARK 3 S31: 0.0010 S32: 0.0834 S33: 0.0725 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 3 D 209 REMARK 3 ORIGIN FOR THE GROUP (A): 41.8390 17.9310 54.0830 REMARK 3 T TENSOR REMARK 3 T11: 0.2032 T22: 0.0118 REMARK 3 T33: 0.0409 T12: -0.0318 REMARK 3 T13: 0.0565 T23: -0.0089 REMARK 3 L TENSOR REMARK 3 L11: 1.1141 L22: 2.1018 REMARK 3 L33: 4.8369 L12: 0.6623 REMARK 3 L13: -1.3922 L23: -2.0805 REMARK 3 S TENSOR REMARK 3 S11: -0.0652 S12: 0.0550 S13: -0.0405 REMARK 3 S21: 0.0014 S22: 0.0165 S23: -0.0557 REMARK 3 S31: -0.0602 S32: -0.0405 S33: 0.0487 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 4 REMARK 4 3KCQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000055827. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-SEP-09 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97953 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45778 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.4 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.44900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1ZLY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: EMERALD JCSG SCREEN CONDITION A2. 100 REMARK 280 MM CITRATE PH 5.0, 20% PEG 3000. PROTEIN CONCENTRATION 54 MG/ML, REMARK 280 VAPOR DIFFUSIONI, SITTING DROP, TEMPERATURE 293K, VAPOR REMARK 280 DIFFUSION, SITTING DROP, PH 5.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 31.22500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 62.62350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 31.22500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 62.62350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 62.45000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 80.54123 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 62.62350 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 137.91303 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 GLU A 28 REMARK 465 PHE A 211 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 GLU B 28 REMARK 465 GLU B 29 REMARK 465 SER B 30 REMARK 465 ASN B 210 REMARK 465 PHE B 211 REMARK 465 GLY C -3 REMARK 465 PRO C -2 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 LYS C 2 REMARK 465 GLY D -3 REMARK 465 PRO D -2 REMARK 465 GLY D -1 REMARK 465 SER D 0 REMARK 465 MET D 1 REMARK 465 LYS D 2 REMARK 465 THR D 27 REMARK 465 GLU D 28 REMARK 465 GLU D 29 REMARK 465 ASN D 210 REMARK 465 PHE D 211 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 3 CG CD CE NZ REMARK 470 GLU A 29 CG CD OE1 OE2 REMARK 470 LYS A 63 CG CD CE NZ REMARK 470 ASP A 192 CG OD1 OD2 REMARK 470 ASN A 210 CG OD1 ND2 REMARK 470 LYS B 3 CG CD CE NZ REMARK 470 LYS B 23 CG CD CE NZ REMARK 470 GLU B 93 CG CD OE1 OE2 REMARK 470 LYS B 125 CG CD CE NZ REMARK 470 ARG B 157 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 158 CG CD OE1 OE2 REMARK 470 LYS B 189 CG CD CE NZ REMARK 470 ASP B 192 CG OD1 OD2 REMARK 470 GLU B 201 CG CD OE1 OE2 REMARK 470 LYS C 3 CG CD CE NZ REMARK 470 GLU C 28 CG CD OE1 OE2 REMARK 470 GLU C 29 CG CD OE1 OE2 REMARK 470 GLU C 158 CG CD OE1 OE2 REMARK 470 LYS C 189 CG CD CE NZ REMARK 470 GLN C 197 CG CD OE1 NE2 REMARK 470 GLU C 201 CG CD OE1 OE2 REMARK 470 GLU C 209 CG CD OE1 OE2 REMARK 470 LYS D 3 CG CD CE NZ REMARK 470 LYS D 63 CG CD CE NZ REMARK 470 LYS D 189 CG CD CE NZ REMARK 470 ASP D 192 CG OD1 OD2 REMARK 470 GLU D 201 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 4 -72.33 -128.83 REMARK 500 HIS A 101 -1.41 76.68 REMARK 500 GLU B 4 -76.11 -82.56 REMARK 500 TYR B 139 -165.97 -107.92 REMARK 500 TRP C 99 40.09 -108.74 REMARK 500 HIS C 100 113.75 -39.59 REMARK 500 PHE D 25 46.87 -109.12 REMARK 500 MET D 88 66.30 -102.33 REMARK 500 PRO D 108 43.34 -86.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 801 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: ANPHA.00677.A RELATED DB: TARGETDB DBREF 3KCQ A 1 211 UNP Q2GLA4 Q2GLA4_ANAPZ 1 211 DBREF 3KCQ B 1 211 UNP Q2GLA4 Q2GLA4_ANAPZ 1 211 DBREF 3KCQ C 1 211 UNP Q2GLA4 Q2GLA4_ANAPZ 1 211 DBREF 3KCQ D 1 211 UNP Q2GLA4 Q2GLA4_ANAPZ 1 211 SEQADV 3KCQ GLY A -3 UNP Q2GLA4 EXPRESSION TAG SEQADV 3KCQ PRO A -2 UNP Q2GLA4 EXPRESSION TAG SEQADV 3KCQ GLY A -1 UNP Q2GLA4 EXPRESSION TAG SEQADV 3KCQ SER A 0 UNP Q2GLA4 EXPRESSION TAG SEQADV 3KCQ GLY B -3 UNP Q2GLA4 EXPRESSION TAG SEQADV 3KCQ PRO B -2 UNP Q2GLA4 EXPRESSION TAG SEQADV 3KCQ GLY B -1 UNP Q2GLA4 EXPRESSION TAG SEQADV 3KCQ SER B 0 UNP Q2GLA4 EXPRESSION TAG SEQADV 3KCQ GLY C -3 UNP Q2GLA4 EXPRESSION TAG SEQADV 3KCQ PRO C -2 UNP Q2GLA4 EXPRESSION TAG SEQADV 3KCQ GLY C -1 UNP Q2GLA4 EXPRESSION TAG SEQADV 3KCQ SER C 0 UNP Q2GLA4 EXPRESSION TAG SEQADV 3KCQ GLY D -3 UNP Q2GLA4 EXPRESSION TAG SEQADV 3KCQ PRO D -2 UNP Q2GLA4 EXPRESSION TAG SEQADV 3KCQ GLY D -1 UNP Q2GLA4 EXPRESSION TAG SEQADV 3KCQ SER D 0 UNP Q2GLA4 EXPRESSION TAG SEQRES 1 A 215 GLY PRO GLY SER MET LYS LYS GLU LEU ARG VAL GLY VAL SEQRES 2 A 215 LEU ILE SER GLY ARG GLY SER ASN LEU GLU ALA LEU ALA SEQRES 3 A 215 LYS ALA PHE SER THR GLU GLU SER SER VAL VAL ILE SER SEQRES 4 A 215 CYS VAL ILE SER ASN ASN ALA GLU ALA ARG GLY LEU LEU SEQRES 5 A 215 ILE ALA GLN SER TYR GLY ILE PRO THR PHE VAL VAL LYS SEQRES 6 A 215 ARG LYS PRO LEU ASP ILE GLU HIS ILE SER THR VAL LEU SEQRES 7 A 215 ARG GLU HIS ASP VAL ASP LEU VAL CYS LEU ALA GLY PHE SEQRES 8 A 215 MET SER ILE LEU PRO GLU LYS PHE VAL THR ASP TRP HIS SEQRES 9 A 215 HIS LYS ILE ILE ASN ILE HIS PRO SER LEU LEU PRO SER SEQRES 10 A 215 PHE LYS GLY LEU ASN ALA GLN GLU GLN ALA TYR LYS ALA SEQRES 11 A 215 GLY VAL LYS ILE ALA GLY CYS THR LEU HIS TYR VAL TYR SEQRES 12 A 215 GLN GLU LEU ASP ALA GLY PRO ILE ILE MET GLN ALA ALA SEQRES 13 A 215 VAL PRO VAL LEU ARG GLU ASP THR ALA GLU SER LEU ALA SEQRES 14 A 215 SER ARG ILE LEU ALA ALA GLU HIS VAL CYS TYR PRO LYS SEQRES 15 A 215 GLY VAL LYS LEU ILE ALA GLN ASP LYS ILE LYS LEU CYS SEQRES 16 A 215 ASP ASP GLY THR VAL GLN CYS THR GLY GLU ASP GLU LEU SEQRES 17 A 215 PHE LEU PHE GLN GLU ASN PHE SEQRES 1 B 215 GLY PRO GLY SER MET LYS LYS GLU LEU ARG VAL GLY VAL SEQRES 2 B 215 LEU ILE SER GLY ARG GLY SER ASN LEU GLU ALA LEU ALA SEQRES 3 B 215 LYS ALA PHE SER THR GLU GLU SER SER VAL VAL ILE SER SEQRES 4 B 215 CYS VAL ILE SER ASN ASN ALA GLU ALA ARG GLY LEU LEU SEQRES 5 B 215 ILE ALA GLN SER TYR GLY ILE PRO THR PHE VAL VAL LYS SEQRES 6 B 215 ARG LYS PRO LEU ASP ILE GLU HIS ILE SER THR VAL LEU SEQRES 7 B 215 ARG GLU HIS ASP VAL ASP LEU VAL CYS LEU ALA GLY PHE SEQRES 8 B 215 MET SER ILE LEU PRO GLU LYS PHE VAL THR ASP TRP HIS SEQRES 9 B 215 HIS LYS ILE ILE ASN ILE HIS PRO SER LEU LEU PRO SER SEQRES 10 B 215 PHE LYS GLY LEU ASN ALA GLN GLU GLN ALA TYR LYS ALA SEQRES 11 B 215 GLY VAL LYS ILE ALA GLY CYS THR LEU HIS TYR VAL TYR SEQRES 12 B 215 GLN GLU LEU ASP ALA GLY PRO ILE ILE MET GLN ALA ALA SEQRES 13 B 215 VAL PRO VAL LEU ARG GLU ASP THR ALA GLU SER LEU ALA SEQRES 14 B 215 SER ARG ILE LEU ALA ALA GLU HIS VAL CYS TYR PRO LYS SEQRES 15 B 215 GLY VAL LYS LEU ILE ALA GLN ASP LYS ILE LYS LEU CYS SEQRES 16 B 215 ASP ASP GLY THR VAL GLN CYS THR GLY GLU ASP GLU LEU SEQRES 17 B 215 PHE LEU PHE GLN GLU ASN PHE SEQRES 1 C 215 GLY PRO GLY SER MET LYS LYS GLU LEU ARG VAL GLY VAL SEQRES 2 C 215 LEU ILE SER GLY ARG GLY SER ASN LEU GLU ALA LEU ALA SEQRES 3 C 215 LYS ALA PHE SER THR GLU GLU SER SER VAL VAL ILE SER SEQRES 4 C 215 CYS VAL ILE SER ASN ASN ALA GLU ALA ARG GLY LEU LEU SEQRES 5 C 215 ILE ALA GLN SER TYR GLY ILE PRO THR PHE VAL VAL LYS SEQRES 6 C 215 ARG LYS PRO LEU ASP ILE GLU HIS ILE SER THR VAL LEU SEQRES 7 C 215 ARG GLU HIS ASP VAL ASP LEU VAL CYS LEU ALA GLY PHE SEQRES 8 C 215 MET SER ILE LEU PRO GLU LYS PHE VAL THR ASP TRP HIS SEQRES 9 C 215 HIS LYS ILE ILE ASN ILE HIS PRO SER LEU LEU PRO SER SEQRES 10 C 215 PHE LYS GLY LEU ASN ALA GLN GLU GLN ALA TYR LYS ALA SEQRES 11 C 215 GLY VAL LYS ILE ALA GLY CYS THR LEU HIS TYR VAL TYR SEQRES 12 C 215 GLN GLU LEU ASP ALA GLY PRO ILE ILE MET GLN ALA ALA SEQRES 13 C 215 VAL PRO VAL LEU ARG GLU ASP THR ALA GLU SER LEU ALA SEQRES 14 C 215 SER ARG ILE LEU ALA ALA GLU HIS VAL CYS TYR PRO LYS SEQRES 15 C 215 GLY VAL LYS LEU ILE ALA GLN ASP LYS ILE LYS LEU CYS SEQRES 16 C 215 ASP ASP GLY THR VAL GLN CYS THR GLY GLU ASP GLU LEU SEQRES 17 C 215 PHE LEU PHE GLN GLU ASN PHE SEQRES 1 D 215 GLY PRO GLY SER MET LYS LYS GLU LEU ARG VAL GLY VAL SEQRES 2 D 215 LEU ILE SER GLY ARG GLY SER ASN LEU GLU ALA LEU ALA SEQRES 3 D 215 LYS ALA PHE SER THR GLU GLU SER SER VAL VAL ILE SER SEQRES 4 D 215 CYS VAL ILE SER ASN ASN ALA GLU ALA ARG GLY LEU LEU SEQRES 5 D 215 ILE ALA GLN SER TYR GLY ILE PRO THR PHE VAL VAL LYS SEQRES 6 D 215 ARG LYS PRO LEU ASP ILE GLU HIS ILE SER THR VAL LEU SEQRES 7 D 215 ARG GLU HIS ASP VAL ASP LEU VAL CYS LEU ALA GLY PHE SEQRES 8 D 215 MET SER ILE LEU PRO GLU LYS PHE VAL THR ASP TRP HIS SEQRES 9 D 215 HIS LYS ILE ILE ASN ILE HIS PRO SER LEU LEU PRO SER SEQRES 10 D 215 PHE LYS GLY LEU ASN ALA GLN GLU GLN ALA TYR LYS ALA SEQRES 11 D 215 GLY VAL LYS ILE ALA GLY CYS THR LEU HIS TYR VAL TYR SEQRES 12 D 215 GLN GLU LEU ASP ALA GLY PRO ILE ILE MET GLN ALA ALA SEQRES 13 D 215 VAL PRO VAL LEU ARG GLU ASP THR ALA GLU SER LEU ALA SEQRES 14 D 215 SER ARG ILE LEU ALA ALA GLU HIS VAL CYS TYR PRO LYS SEQRES 15 D 215 GLY VAL LYS LEU ILE ALA GLN ASP LYS ILE LYS LEU CYS SEQRES 16 D 215 ASP ASP GLY THR VAL GLN CYS THR GLY GLU ASP GLU LEU SEQRES 17 D 215 PHE LEU PHE GLN GLU ASN PHE HET GOL A 801 6 HET GOL B 801 6 HET GOL C 801 6 HET GOL D 801 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL 4(C3 H8 O3) FORMUL 9 HOH *205(H2 O) HELIX 1 1 GLY A 15 PHE A 25 1 11 HELIX 2 2 ARG A 45 TYR A 53 1 9 HELIX 3 3 ASP A 66 HIS A 77 1 12 HELIX 4 4 PRO A 92 TRP A 99 1 8 HELIX 5 5 ASN A 118 GLY A 127 1 10 HELIX 6 6 THR A 160 GLN A 185 1 26 HELIX 7 7 GLY B 15 PHE B 25 1 11 HELIX 8 8 ARG B 45 TYR B 53 1 9 HELIX 9 9 ASP B 66 HIS B 77 1 12 HELIX 10 10 PRO B 92 TRP B 99 1 8 HELIX 11 11 ASN B 118 GLY B 127 1 10 HELIX 12 12 THR B 160 GLN B 185 1 26 HELIX 13 13 GLY C 15 SER C 26 1 12 HELIX 14 14 ARG C 45 TYR C 53 1 9 HELIX 15 15 ASP C 66 HIS C 77 1 12 HELIX 16 16 PRO C 92 TRP C 99 1 8 HELIX 17 17 ASN C 118 GLY C 127 1 10 HELIX 18 18 THR C 160 GLN C 185 1 26 HELIX 19 19 GLY D 15 PHE D 25 1 11 HELIX 20 20 ARG D 45 TYR D 53 1 9 HELIX 21 21 ASP D 66 HIS D 77 1 12 HELIX 22 22 PRO D 92 TRP D 99 1 8 HELIX 23 23 ASN D 118 GLY D 127 1 10 HELIX 24 24 THR D 160 GLN D 185 1 26 SHEET 1 A 8 THR A 57 VAL A 59 0 SHEET 2 A 8 VAL A 32 SER A 39 1 N SER A 39 O PHE A 58 SHEET 3 A 8 LEU A 5 ILE A 11 1 N VAL A 7 O VAL A 33 SHEET 4 A 8 LEU A 81 LEU A 84 1 O CYS A 83 N GLY A 8 SHEET 5 A 8 ILE A 103 HIS A 107 1 O ILE A 104 N LEU A 84 SHEET 6 A 8 ILE A 130 TYR A 137 -1 O THR A 134 N HIS A 107 SHEET 7 A 8 ILE A 147 PRO A 154 -1 O VAL A 153 N ALA A 131 SHEET 8 A 8 PHE A 205 PHE A 207 1 O LEU A 206 N ALA A 152 SHEET 1 B 2 ILE A 188 LEU A 190 0 SHEET 2 B 2 VAL A 196 CYS A 198 -1 O GLN A 197 N LYS A 189 SHEET 1 C 8 THR B 57 VAL B 59 0 SHEET 2 C 8 VAL B 32 SER B 39 1 N SER B 39 O PHE B 58 SHEET 3 C 8 LEU B 5 ILE B 11 1 N VAL B 7 O VAL B 33 SHEET 4 C 8 LEU B 81 LEU B 84 1 O CYS B 83 N GLY B 8 SHEET 5 C 8 ILE B 103 HIS B 107 1 O ILE B 104 N VAL B 82 SHEET 6 C 8 ILE B 130 TYR B 137 -1 O THR B 134 N HIS B 107 SHEET 7 C 8 ILE B 147 PRO B 154 -1 O ILE B 148 N LEU B 135 SHEET 8 C 8 PHE B 205 PHE B 207 1 O LEU B 206 N ALA B 152 SHEET 1 D 2 ILE B 188 LEU B 190 0 SHEET 2 D 2 VAL B 196 CYS B 198 -1 O GLN B 197 N LYS B 189 SHEET 1 E 8 THR C 57 VAL C 59 0 SHEET 2 E 8 VAL C 32 SER C 39 1 N SER C 39 O PHE C 58 SHEET 3 E 8 LEU C 5 ILE C 11 1 N LEU C 5 O VAL C 33 SHEET 4 E 8 LEU C 81 LEU C 84 1 O CYS C 83 N GLY C 8 SHEET 5 E 8 ILE C 103 HIS C 107 1 O ILE C 104 N LEU C 84 SHEET 6 E 8 ILE C 130 TYR C 137 -1 O THR C 134 N HIS C 107 SHEET 7 E 8 ILE C 147 PRO C 154 -1 O VAL C 153 N ALA C 131 SHEET 8 E 8 PHE C 205 PHE C 207 1 O LEU C 206 N ALA C 152 SHEET 1 F 2 ILE C 188 LEU C 190 0 SHEET 2 F 2 VAL C 196 CYS C 198 -1 O GLN C 197 N LYS C 189 SHEET 1 G 8 THR D 57 VAL D 59 0 SHEET 2 G 8 VAL D 32 SER D 39 1 N SER D 39 O PHE D 58 SHEET 3 G 8 LEU D 5 ILE D 11 1 N LEU D 5 O VAL D 33 SHEET 4 G 8 LEU D 81 LEU D 84 1 O CYS D 83 N GLY D 8 SHEET 5 G 8 ILE D 103 HIS D 107 1 O ILE D 104 N LEU D 84 SHEET 6 G 8 ILE D 130 TYR D 137 -1 O THR D 134 N HIS D 107 SHEET 7 G 8 ILE D 147 PRO D 154 -1 O MET D 149 N LEU D 135 SHEET 8 G 8 PHE D 205 PHE D 207 1 O LEU D 206 N ALA D 152 SHEET 1 H 2 ILE D 188 LEU D 190 0 SHEET 2 H 2 VAL D 196 CYS D 198 -1 O GLN D 197 N LYS D 189 CISPEP 1 LYS A 63 PRO A 64 0 -0.80 CISPEP 2 LEU A 111 PRO A 112 0 13.89 CISPEP 3 LYS B 63 PRO B 64 0 -9.93 CISPEP 4 LEU B 111 PRO B 112 0 9.20 CISPEP 5 LYS C 63 PRO C 64 0 -0.32 CISPEP 6 LEU C 111 PRO C 112 0 9.35 CISPEP 7 LYS D 63 PRO D 64 0 9.75 CISPEP 8 LEU D 111 PRO D 112 0 8.95 SITE 1 AC1 9 GLY A 13 ARG A 14 GLY A 15 SER A 16 SITE 2 AC1 9 ASN A 17 HOH A 215 HOH A 216 HOH A 233 SITE 3 AC1 9 HOH A 238 SITE 1 AC2 7 ARG B 14 GLY B 15 SER B 16 ASN B 17 SITE 2 AC2 7 HOH B 213 HOH B 227 HOH B 250 SITE 1 AC3 8 GLY C 13 ARG C 14 GLY C 15 ASN C 17 SITE 2 AC3 8 GLY C 86 HOH C 224 HOH C 253 HOH C 276 SITE 1 AC4 5 ARG D 14 GLY D 15 SER D 16 ASN D 17 SITE 2 AC4 5 HOH D 215 CRYST1 62.450 125.247 138.537 90.00 95.44 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016013 0.000000 0.001525 0.00000 SCALE2 0.000000 0.007984 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007251 0.00000