HEADER HYDROLASE 22-OCT-09 3KD4 TITLE CRYSTAL STRUCTURE OF A PUTATIVE PROTEASE (BDI_1141) FROM TITLE 2 PARABACTEROIDES DISTASONIS ATCC 8503 AT 2.00 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE PROTEASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CONSERVED HYPOTHETICAL EXPORTED PROTEIN, POSSIBLE ATP/GTP- COMPND 5 BINDING; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PARABACTEROIDES DISTASONIS ATCC 8503; SOURCE 3 ORGANISM_TAXID: 435591; SOURCE 4 STRAIN: ATCC 8503 / DSM 20701 / NCTC 11152; SOURCE 5 GENE: BDI_1141; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PUTATIVE PROTEASE, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 01-FEB-23 3KD4 1 REMARK SEQADV REVDAT 5 17-JUL-19 3KD4 1 REMARK LINK REVDAT 4 01-NOV-17 3KD4 1 REMARK REVDAT 3 13-JUL-11 3KD4 1 VERSN REVDAT 2 28-JUL-10 3KD4 1 HEADER TITLE KEYWDS REVDAT 1 24-NOV-09 3KD4 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE PROTEASES (YP_001302526.1) JRNL TITL 2 FROM PARABACTEROIDES DISTASONIS ATCC 8503 AT 2.00 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0053 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 125591 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6308 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 8726 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2360 REMARK 3 BIN FREE R VALUE SET COUNT : 444 REMARK 3 BIN FREE R VALUE : 0.2720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7696 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 156 REMARK 3 SOLVENT ATOMS : 1095 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 25.14 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.08000 REMARK 3 B22 (A**2) : -0.18000 REMARK 3 B33 (A**2) : -0.90000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.10000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.115 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.113 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.075 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.989 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8226 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 5495 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11229 ; 1.523 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13561 ; 0.883 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1085 ; 6.006 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 326 ;32.937 ;24.693 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1375 ;12.530 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;20.192 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1312 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9071 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1517 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5177 ; 0.839 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2064 ; 0.208 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 8446 ; 1.561 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3049 ; 2.516 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2747 ; 4.191 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 25 A 527 6 REMARK 3 1 B 25 B 527 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 6314 ; 0.280 ; 5.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 6314 ; 0.980 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 23 A 388 REMARK 3 ORIGIN FOR THE GROUP (A): 28.1578 27.9659 21.2352 REMARK 3 T TENSOR REMARK 3 T11: 0.0083 T22: 0.0123 REMARK 3 T33: 0.0096 T12: -0.0069 REMARK 3 T13: -0.0024 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 0.1341 L22: 0.3088 REMARK 3 L33: 0.8251 L12: -0.0355 REMARK 3 L13: -0.0825 L23: 0.1321 REMARK 3 S TENSOR REMARK 3 S11: -0.0030 S12: -0.0188 S13: -0.0210 REMARK 3 S21: -0.0158 S22: -0.0106 S23: 0.0409 REMARK 3 S31: 0.0689 S32: -0.0746 S33: 0.0136 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 389 A 527 REMARK 3 ORIGIN FOR THE GROUP (A): 23.5077 -7.1921 39.7214 REMARK 3 T TENSOR REMARK 3 T11: 0.0318 T22: 0.0041 REMARK 3 T33: 0.0390 T12: 0.0064 REMARK 3 T13: 0.0169 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 1.1154 L22: 3.8146 REMARK 3 L33: 0.5832 L12: 0.9681 REMARK 3 L13: -0.3704 L23: -0.3611 REMARK 3 S TENSOR REMARK 3 S11: -0.0100 S12: 0.0250 S13: -0.0036 REMARK 3 S21: 0.0357 S22: -0.0199 S23: 0.2912 REMARK 3 S31: -0.0083 S32: 0.0121 S33: 0.0299 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 23 B 388 REMARK 3 ORIGIN FOR THE GROUP (A): 27.6933 -37.5977 17.0606 REMARK 3 T TENSOR REMARK 3 T11: 0.0033 T22: 0.0064 REMARK 3 T33: 0.0056 T12: 0.0022 REMARK 3 T13: 0.0030 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.1719 L22: 0.1491 REMARK 3 L33: 0.7517 L12: 0.0336 REMARK 3 L13: 0.1330 L23: 0.0027 REMARK 3 S TENSOR REMARK 3 S11: 0.0040 S12: 0.0166 S13: 0.0162 REMARK 3 S21: 0.0138 S22: -0.0067 S23: 0.0185 REMARK 3 S31: -0.0322 S32: -0.0375 S33: 0.0027 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 389 B 527 REMARK 3 ORIGIN FOR THE GROUP (A): 24.6828 -2.5479 -1.4490 REMARK 3 T TENSOR REMARK 3 T11: 0.0302 T22: 0.0062 REMARK 3 T33: 0.0506 T12: -0.0112 REMARK 3 T13: -0.0196 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 0.7461 L22: 3.9346 REMARK 3 L33: 0.7974 L12: -0.8867 REMARK 3 L13: 0.3687 L23: -0.4249 REMARK 3 S TENSOR REMARK 3 S11: -0.0268 S12: -0.0091 S13: -0.0044 REMARK 3 S21: -0.0529 S22: -0.0109 S23: 0.3249 REMARK 3 S31: -0.0243 S32: 0.0061 S33: 0.0377 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 3 4. PHOSPHATE (PO4) AND GLYCEROL (GOL) MODELED ARE PRESENT IN REMARK 3 CRYSTLLIZATION/CRYO CONDITIONS. REMARK 4 REMARK 4 3KD4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000055841. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.67 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97913,0.97860 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 125591 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 28.928 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.5900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.55900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: DATA WERE SCALED USING XSCALE WITH FRIEDEL PAIRS KEPT AS REMARK 200 SEPARATE WHEN COMPUTING R-SYM, COMPLETENESS AND REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25.0000% GLYCEROL, 1.1000M AMMONIUM REMARK 280 DIHYDROGEN PHOSPHATE, 0.1M CITRIC ACID PH 5.67, NANODROP', VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 76.58350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 79.69850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 76.58350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 79.69850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -66.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 P PO4 B 1 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 GLY B 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 106 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 210 NE CZ NH1 NH2 REMARK 470 GLU A 219 CG CD OE1 OE2 REMARK 470 GLN A 247 CG CD OE1 NE2 REMARK 470 LYS A 261 CG CD CE NZ REMARK 470 ASP A 404 CG OD1 OD2 REMARK 470 LYS A 407 CG CD CE NZ REMARK 470 LYS A 433 CG CD CE NZ REMARK 470 GLU A 456 CG CD OE1 OE2 REMARK 470 LEU A 527 CG CD1 CD2 REMARK 470 SER B 25 OG REMARK 470 LYS B 79 CD CE NZ REMARK 470 ARG B 106 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 210 CZ NH1 NH2 REMARK 470 ASP B 404 CG OD1 OD2 REMARK 470 LYS B 407 CG CD CE NZ REMARK 470 LYS B 433 CG CD CE NZ REMARK 470 ARG B 445 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 456 CG CD OE1 OE2 REMARK 470 LYS B 459 CD CE NZ REMARK 470 LEU B 527 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 847 O HOH A 989 2.18 REMARK 500 O HOH A 682 O HOH A 947 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS B 178 CB CYS B 178 SG -0.121 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 296 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 24 -72.87 -74.38 REMARK 500 GLU B 190 80.72 -152.16 REMARK 500 ALA B 406 67.69 -58.88 REMARK 500 LYS B 407 78.38 -49.96 REMARK 500 ASP B 408 81.12 61.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 8 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 9 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 10 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 15 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 18 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 19 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 21 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 528 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 529 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 530 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 531 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 11 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 12 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 13 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 14 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 16 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 17 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 20 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 528 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 529 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 394828 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT (RESIDUES 23-527) WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3KD4 A 23 527 UNP A6LB40 A6LB40_PARD8 23 527 DBREF 3KD4 B 23 527 UNP A6LB40 A6LB40_PARD8 23 527 SEQADV 3KD4 GLY A 0 UNP A6LB40 EXPRESSION TAG SEQADV 3KD4 GLY B 0 UNP A6LB40 EXPRESSION TAG SEQRES 1 A 506 GLY ALA ALA SER GLU ALA GLU TYR GLY LYS VAL SER LYS SEQRES 2 A 506 ALA TRP THR LEU HIS ALA ASP GLY SER GLN GLU TYR ARG SEQRES 3 A 506 SER SER MSE GLU LEU THR LEU PHE THR HIS THR ALA MSE SEQRES 4 A 506 ASN SER THR TYR GLY GLU SER PHE ILE VAL TYR ASN PRO SEQRES 5 A 506 ASP PHE GLN THR LEU LYS ILE HIS SER SER TYR THR ARG SEQRES 6 A 506 GLN LYS ASP GLY THR ILE VAL LYS THR PRO ASP ASN ALA SEQRES 7 A 506 PHE VAL GLU VAL LEU PRO ARG PHE ALA ALA ASP ALA PRO SEQRES 8 A 506 ALA TYR ASN GLN LEU LYS GLU MSE VAL VAL VAL HIS THR SEQRES 9 A 506 GLY LEU GLU LEU GLY ALA THR ILE TYR LEU ASP TYR SER SEQRES 10 A 506 ILE ILE THR LYS PRO GLY TYR TYR PRO ALA LEU ASP ILE SEQRES 11 A 506 ASN GLU ARG LEU GLN GLU THR SER PRO VAL LYS GLU CYS SEQRES 12 A 506 LYS VAL SER ILE SER VAL PRO GLU GLY THR PRO LEU ALA SEQRES 13 A 506 CYS GLY LEU TYR GLY SER PRO VAL LYS ALA VAL GLU GLU SEQRES 14 A 506 SER HIS ASP GLY ILE LYS GLU VAL HIS TRP THR LEU ARG SEQRES 15 A 506 ASN ILE PRO ALA SER SER ARG GLU ALA PHE GLN PRO LYS SEQRES 16 A 506 ASN ARG GLU ALA SER PRO HIS LEU VAL ALA SER THR TYR SEQRES 17 A 506 PRO SER GLY LYS ALA ALA LEU ALA THR LEU ASP LYS ARG SEQRES 18 A 506 LEU LYS GLU SER GLN GLY TYR GLU SER LYS THR PHE ALA SEQRES 19 A 506 GLN PHE LEU THR ASP LYS SER GLY ASN GLU GLN GLU LYS SEQRES 20 A 506 VAL ASN ILE ILE ARG ASP HIS ILE LEU ASN ASN LEU SER SEQRES 21 A 506 THR CYS PRO ILE PRO MSE ALA MSE THR GLY TYR THR VAL SEQRES 22 A 506 ARG ASP ILE ASP THR VAL LEU ARG SER ALA TYR GLY THR SEQRES 23 A 506 PRO LEU GLU ILE ALA GLN LEU LEU ASN VAL MSE LEU ASN SEQRES 24 A 506 ALA ALA GLY ILE PRO SER GLU VAL LEU ALA VAL TYR PRO SEQRES 25 A 506 GLY HIS LEU ASP THR ASP ALA CYS GLY LEU ALA ALA ILE SEQRES 26 A 506 GLN THR LEU ALA VAL LYS ALA THR VAL ASP GLY LYS ASP SEQRES 27 A 506 GLN TYR LEU SER ALA SER PRO LEU THR ASN ARG GLY GLY SEQRES 28 A 506 LEU ASP LYS VAL VAL SER LEU SER GLY THR SER ILE GLU SEQRES 29 A 506 ILE GLU THR THR PRO ILE GLN ILE LYS GLU SER ARG SER SEQRES 30 A 506 VAL ALA ILE SER ALA ASP GLN ALA LYS ASP GLY PHE ALA SEQRES 31 A 506 ILE CYS VAL LEU PRO ALA ILE SER ALA GLY ILE ASP SER SEQRES 32 A 506 TRP GLY MSE SER ALA LEU ASN SER LYS ARG SER ASN LEU SEQRES 33 A 506 PHE GLU LEU PRO SER LEU ILE ARG GLU GLU VAL THR TYR SEQRES 34 A 506 THR VAL THR PRO ALA GLU GLY MSE LYS LEU GLN THR SER SEQRES 35 A 506 THR GLN GLU GLN VAL ILE SER LYS PRO PHE GLY LYS VAL SEQRES 36 A 506 THR ARG THR ILE THR PRO ARG GLY ASN THR ILE GLU VAL SEQRES 37 A 506 VAL ARG THR ILE GLU LEU ASN LYS GLN GLN PHE THR PRO SEQRES 38 A 506 ALA GLU TYR SER ASP VAL ARG SER LEU ILE HIS GLU TRP SEQRES 39 A 506 THR ASN PRO ASP ASN ARG VAL LEU LEU PHE SER LEU SEQRES 1 B 506 GLY ALA ALA SER GLU ALA GLU TYR GLY LYS VAL SER LYS SEQRES 2 B 506 ALA TRP THR LEU HIS ALA ASP GLY SER GLN GLU TYR ARG SEQRES 3 B 506 SER SER MSE GLU LEU THR LEU PHE THR HIS THR ALA MSE SEQRES 4 B 506 ASN SER THR TYR GLY GLU SER PHE ILE VAL TYR ASN PRO SEQRES 5 B 506 ASP PHE GLN THR LEU LYS ILE HIS SER SER TYR THR ARG SEQRES 6 B 506 GLN LYS ASP GLY THR ILE VAL LYS THR PRO ASP ASN ALA SEQRES 7 B 506 PHE VAL GLU VAL LEU PRO ARG PHE ALA ALA ASP ALA PRO SEQRES 8 B 506 ALA TYR ASN GLN LEU LYS GLU MSE VAL VAL VAL HIS THR SEQRES 9 B 506 GLY LEU GLU LEU GLY ALA THR ILE TYR LEU ASP TYR SER SEQRES 10 B 506 ILE ILE THR LYS PRO GLY TYR TYR PRO ALA LEU ASP ILE SEQRES 11 B 506 ASN GLU ARG LEU GLN GLU THR SER PRO VAL LYS GLU CYS SEQRES 12 B 506 LYS VAL SER ILE SER VAL PRO GLU GLY THR PRO LEU ALA SEQRES 13 B 506 CYS GLY LEU TYR GLY SER PRO VAL LYS ALA VAL GLU GLU SEQRES 14 B 506 SER HIS ASP GLY ILE LYS GLU VAL HIS TRP THR LEU ARG SEQRES 15 B 506 ASN ILE PRO ALA SER SER ARG GLU ALA PHE GLN PRO LYS SEQRES 16 B 506 ASN ARG GLU ALA SER PRO HIS LEU VAL ALA SER THR TYR SEQRES 17 B 506 PRO SER GLY LYS ALA ALA LEU ALA THR LEU ASP LYS ARG SEQRES 18 B 506 LEU LYS GLU SER GLN GLY TYR GLU SER LYS THR PHE ALA SEQRES 19 B 506 GLN PHE LEU THR ASP LYS SER GLY ASN GLU GLN GLU LYS SEQRES 20 B 506 VAL ASN ILE ILE ARG ASP HIS ILE LEU ASN ASN LEU SER SEQRES 21 B 506 THR CYS PRO ILE PRO MSE ALA MSE THR GLY TYR THR VAL SEQRES 22 B 506 ARG ASP ILE ASP THR VAL LEU ARG SER ALA TYR GLY THR SEQRES 23 B 506 PRO LEU GLU ILE ALA GLN LEU LEU ASN VAL MSE LEU ASN SEQRES 24 B 506 ALA ALA GLY ILE PRO SER GLU VAL LEU ALA VAL TYR PRO SEQRES 25 B 506 GLY HIS LEU ASP THR ASP ALA CYS GLY LEU ALA ALA ILE SEQRES 26 B 506 GLN THR LEU ALA VAL LYS ALA THR VAL ASP GLY LYS ASP SEQRES 27 B 506 GLN TYR LEU SER ALA SER PRO LEU THR ASN ARG GLY GLY SEQRES 28 B 506 LEU ASP LYS VAL VAL SER LEU SER GLY THR SER ILE GLU SEQRES 29 B 506 ILE GLU THR THR PRO ILE GLN ILE LYS GLU SER ARG SER SEQRES 30 B 506 VAL ALA ILE SER ALA ASP GLN ALA LYS ASP GLY PHE ALA SEQRES 31 B 506 ILE CYS VAL LEU PRO ALA ILE SER ALA GLY ILE ASP SER SEQRES 32 B 506 TRP GLY MSE SER ALA LEU ASN SER LYS ARG SER ASN LEU SEQRES 33 B 506 PHE GLU LEU PRO SER LEU ILE ARG GLU GLU VAL THR TYR SEQRES 34 B 506 THR VAL THR PRO ALA GLU GLY MSE LYS LEU GLN THR SER SEQRES 35 B 506 THR GLN GLU GLN VAL ILE SER LYS PRO PHE GLY LYS VAL SEQRES 36 B 506 THR ARG THR ILE THR PRO ARG GLY ASN THR ILE GLU VAL SEQRES 37 B 506 VAL ARG THR ILE GLU LEU ASN LYS GLN GLN PHE THR PRO SEQRES 38 B 506 ALA GLU TYR SER ASP VAL ARG SER LEU ILE HIS GLU TRP SEQRES 39 B 506 THR ASN PRO ASP ASN ARG VAL LEU LEU PHE SER LEU MODRES 3KD4 MSE A 50 MET SELENOMETHIONINE MODRES 3KD4 MSE A 60 MET SELENOMETHIONINE MODRES 3KD4 MSE A 120 MET SELENOMETHIONINE MODRES 3KD4 MSE A 287 MET SELENOMETHIONINE MODRES 3KD4 MSE A 289 MET SELENOMETHIONINE MODRES 3KD4 MSE A 318 MET SELENOMETHIONINE MODRES 3KD4 MSE A 427 MET SELENOMETHIONINE MODRES 3KD4 MSE A 458 MET SELENOMETHIONINE MODRES 3KD4 MSE B 50 MET SELENOMETHIONINE MODRES 3KD4 MSE B 60 MET SELENOMETHIONINE MODRES 3KD4 MSE B 120 MET SELENOMETHIONINE MODRES 3KD4 MSE B 287 MET SELENOMETHIONINE MODRES 3KD4 MSE B 289 MET SELENOMETHIONINE MODRES 3KD4 MSE B 318 MET SELENOMETHIONINE MODRES 3KD4 MSE B 427 MET SELENOMETHIONINE MODRES 3KD4 MSE B 458 MET SELENOMETHIONINE HET MSE A 50 13 HET MSE A 60 8 HET MSE A 120 8 HET MSE A 287 8 HET MSE A 289 8 HET MSE A 318 8 HET MSE A 427 8 HET MSE A 458 8 HET MSE B 50 13 HET MSE B 60 8 HET MSE B 120 8 HET MSE B 287 8 HET MSE B 289 8 HET MSE B 318 8 HET MSE B 427 8 HET MSE B 458 8 HET PO4 A 2 5 HET PO4 A 3 5 HET PO4 A 5 5 HET GOL A 7 6 HET GOL A 8 6 HET GOL A 9 6 HET GOL A 10 6 HET GOL A 15 6 HET GOL A 18 6 HET GOL A 19 6 HET GOL A 21 6 HET GOL A 528 6 HET GOL A 529 6 HET GOL A 530 6 HET GOL A 531 6 HET PO4 B 1 5 HET PO4 B 4 5 HET PO4 B 6 5 HET GOL B 11 6 HET GOL B 12 6 HET GOL B 13 6 HET GOL B 14 6 HET GOL B 16 6 HET GOL B 17 6 HET GOL B 20 6 HET GOL B 528 6 HET GOL B 529 6 HETNAM MSE SELENOMETHIONINE HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 3 PO4 6(O4 P 3-) FORMUL 6 GOL 21(C3 H8 O3) FORMUL 30 HOH *1095(H2 O) HELIX 1 1 THR A 56 ASN A 61 1 6 HELIX 2 2 SER A 62 TYR A 64 5 3 HELIX 3 3 PRO A 96 ASN A 98 5 3 HELIX 4 4 PRO A 105 ALA A 109 5 5 HELIX 5 5 ALA A 111 ASN A 115 5 5 HELIX 6 6 SER A 231 LYS A 244 1 14 HELIX 7 7 GLY A 248 ASP A 260 1 13 HELIX 8 8 ASN A 264 LEU A 280 1 17 HELIX 9 9 PRO A 286 GLY A 291 5 6 HELIX 10 10 ASP A 296 ALA A 304 1 9 HELIX 11 11 THR A 307 ALA A 322 1 16 HELIX 12 12 ASP A 337 CYS A 341 5 5 HELIX 13 13 PRO A 366 GLY A 371 1 6 HELIX 14 14 ALA A 403 LYS A 407 5 5 HELIX 15 15 ALA A 420 TRP A 425 5 6 HELIX 16 16 THR A 501 ASN A 517 1 17 HELIX 17 17 PRO A 518 ASN A 520 5 3 HELIX 18 18 THR B 56 ASN B 61 1 6 HELIX 19 19 SER B 62 TYR B 64 5 3 HELIX 20 20 PRO B 96 ASN B 98 5 3 HELIX 21 21 PRO B 105 ALA B 109 5 5 HELIX 22 22 ALA B 111 ASN B 115 5 5 HELIX 23 23 SER B 231 SER B 246 1 16 HELIX 24 24 GLY B 248 ASP B 260 1 13 HELIX 25 25 ASN B 264 LEU B 280 1 17 HELIX 26 26 PRO B 286 GLY B 291 5 6 HELIX 27 27 ASP B 296 ALA B 304 1 9 HELIX 28 28 THR B 307 ALA B 322 1 16 HELIX 29 29 ASP B 337 CYS B 341 5 5 HELIX 30 30 GLY B 342 ILE B 346 5 5 HELIX 31 31 PRO B 366 GLY B 371 1 6 HELIX 32 32 SER B 402 LYS B 407 5 6 HELIX 33 33 ALA B 420 TRP B 425 5 6 HELIX 34 34 THR B 501 ASN B 517 1 17 HELIX 35 35 PRO B 518 ASN B 520 5 3 SHEET 1 A 8 ILE A 92 LYS A 94 0 SHEET 2 A 8 GLN A 76 ARG A 86 -1 N THR A 85 O VAL A 93 SHEET 3 A 8 THR A 132 THR A 141 -1 O THR A 132 N ARG A 86 SHEET 4 A 8 GLN A 44 LEU A 54 -1 N LEU A 52 O ILE A 133 SHEET 5 A 8 ALA A 27 LEU A 38 -1 N GLU A 28 O THR A 53 SHEET 6 A 8 VAL A 161 PRO A 171 1 O LYS A 162 N TYR A 29 SHEET 7 A 8 ILE A 195 ILE A 205 -1 O LYS A 196 N VAL A 170 SHEET 8 A 8 VAL A 188 HIS A 192 -1 N GLU A 190 O GLU A 197 SHEET 1 B 3 GLU A 66 TYR A 71 0 SHEET 2 B 3 LYS A 118 VAL A 123 -1 O LYS A 118 N TYR A 71 SHEET 3 B 3 PHE A 100 VAL A 103 -1 N VAL A 101 O VAL A 121 SHEET 1 C 3 ASP A 150 ARG A 154 0 SHEET 2 C 3 HIS A 223 SER A 227 -1 O ALA A 226 N ILE A 151 SHEET 3 C 3 ALA A 177 TYR A 181 -1 N TYR A 181 O HIS A 223 SHEET 1 D 2 SER A 281 THR A 282 0 SHEET 2 D 2 TYR A 305 GLY A 306 1 O GLY A 306 N SER A 281 SHEET 1 E 5 LYS A 358 LEU A 362 0 SHEET 2 E 5 THR A 348 VAL A 355 -1 N VAL A 351 O LEU A 362 SHEET 3 E 5 SER A 326 PRO A 333 -1 N LEU A 329 O ALA A 350 SHEET 4 E 5 ASP A 374 SER A 378 -1 O LYS A 375 N TYR A 332 SHEET 5 E 5 SER A 383 ILE A 384 -1 O ILE A 384 N VAL A 376 SHEET 1 F 5 ILE A 391 ILE A 401 0 SHEET 2 F 5 ILE A 444 PRO A 454 1 O THR A 453 N VAL A 399 SHEET 3 F 5 THR A 486 LEU A 495 -1 O ILE A 487 N VAL A 452 SHEET 4 F 5 GLY A 474 ARG A 483 -1 N ARG A 483 O THR A 486 SHEET 5 F 5 GLN A 467 LYS A 471 -1 N LYS A 471 O GLY A 474 SHEET 1 G 3 PHE A 410 VAL A 414 0 SHEET 2 G 3 VAL A 522 SER A 526 -1 O LEU A 523 N CYS A 413 SHEET 3 G 3 LYS A 459 LEU A 460 -1 N LYS A 459 O SER A 526 SHEET 1 H 2 PHE A 438 GLU A 439 0 SHEET 2 H 2 GLN A 499 PHE A 500 -1 O PHE A 500 N PHE A 438 SHEET 1 I 8 ILE B 92 LYS B 94 0 SHEET 2 I 8 GLN B 76 ARG B 86 -1 N THR B 85 O VAL B 93 SHEET 3 I 8 THR B 132 THR B 141 -1 O TYR B 134 N TYR B 84 SHEET 4 I 8 GLN B 44 LEU B 54 -1 N LEU B 52 O ILE B 133 SHEET 5 I 8 ALA B 27 LEU B 38 -1 N GLU B 28 O THR B 53 SHEET 6 I 8 VAL B 161 PRO B 171 1 O LYS B 162 N TYR B 29 SHEET 7 I 8 ILE B 195 ILE B 205 -1 O LYS B 196 N VAL B 170 SHEET 8 I 8 VAL B 188 GLU B 189 -1 N VAL B 188 O HIS B 199 SHEET 1 J 3 GLU B 66 TYR B 71 0 SHEET 2 J 3 LYS B 118 VAL B 123 -1 O LYS B 118 N TYR B 71 SHEET 3 J 3 PHE B 100 VAL B 103 -1 N VAL B 101 O VAL B 121 SHEET 1 K 3 ASP B 150 ARG B 154 0 SHEET 2 K 3 HIS B 223 SER B 227 -1 O LEU B 224 N GLU B 153 SHEET 3 K 3 ALA B 177 TYR B 181 -1 N TYR B 181 O HIS B 223 SHEET 1 L 2 SER B 281 THR B 282 0 SHEET 2 L 2 TYR B 305 GLY B 306 1 O GLY B 306 N SER B 281 SHEET 1 M 5 LYS B 358 LEU B 362 0 SHEET 2 M 5 THR B 348 VAL B 355 -1 N VAL B 351 O LEU B 362 SHEET 3 M 5 SER B 326 PRO B 333 -1 N LEU B 329 O ALA B 350 SHEET 4 M 5 ASP B 374 SER B 378 -1 O LYS B 375 N TYR B 332 SHEET 5 M 5 SER B 383 ILE B 384 -1 O ILE B 384 N VAL B 376 SHEET 1 N 5 ILE B 391 ILE B 401 0 SHEET 2 N 5 ILE B 444 PRO B 454 1 O THR B 453 N VAL B 399 SHEET 3 N 5 THR B 486 LEU B 495 -1 O ILE B 493 N GLU B 446 SHEET 4 N 5 GLY B 474 ARG B 483 -1 N ARG B 483 O THR B 486 SHEET 5 N 5 GLN B 467 LYS B 471 -1 N LYS B 471 O GLY B 474 SHEET 1 O 3 PHE B 410 VAL B 414 0 SHEET 2 O 3 VAL B 522 SER B 526 -1 O LEU B 523 N CYS B 413 SHEET 3 O 3 LYS B 459 LEU B 460 -1 N LYS B 459 O SER B 526 SHEET 1 P 2 PHE B 438 GLU B 439 0 SHEET 2 P 2 GLN B 499 PHE B 500 -1 O PHE B 500 N PHE B 438 LINK C SER A 49 N MSE A 50 1555 1555 1.32 LINK C MSE A 50 N GLU A 51 1555 1555 1.32 LINK C ALA A 59 N MSE A 60 1555 1555 1.33 LINK C MSE A 60 N ASN A 61 1555 1555 1.34 LINK C GLU A 119 N MSE A 120 1555 1555 1.34 LINK C MSE A 120 N VAL A 121 1555 1555 1.33 LINK C PRO A 286 N MSE A 287 1555 1555 1.33 LINK C MSE A 287 N ALA A 288 1555 1555 1.33 LINK C ALA A 288 N MSE A 289 1555 1555 1.32 LINK C MSE A 289 N THR A 290 1555 1555 1.33 LINK C VAL A 317 N MSE A 318 1555 1555 1.32 LINK C MSE A 318 N LEU A 319 1555 1555 1.34 LINK C GLY A 426 N MSE A 427 1555 1555 1.34 LINK C MSE A 427 N SER A 428 1555 1555 1.32 LINK C GLY A 457 N MSE A 458 1555 1555 1.33 LINK C MSE A 458 N LYS A 459 1555 1555 1.32 LINK C SER B 49 N MSE B 50 1555 1555 1.32 LINK C MSE B 50 N GLU B 51 1555 1555 1.33 LINK C ALA B 59 N MSE B 60 1555 1555 1.32 LINK C MSE B 60 N ASN B 61 1555 1555 1.33 LINK C GLU B 119 N MSE B 120 1555 1555 1.33 LINK C MSE B 120 N VAL B 121 1555 1555 1.32 LINK C PRO B 286 N MSE B 287 1555 1555 1.33 LINK C MSE B 287 N ALA B 288 1555 1555 1.33 LINK C ALA B 288 N MSE B 289 1555 1555 1.33 LINK C MSE B 289 N THR B 290 1555 1555 1.33 LINK C VAL B 317 N MSE B 318 1555 1555 1.33 LINK C MSE B 318 N LEU B 319 1555 1555 1.34 LINK C GLY B 426 N MSE B 427 1555 1555 1.33 LINK C MSE B 427 N SER B 428 1555 1555 1.32 LINK C GLY B 457 N MSE B 458 1555 1555 1.33 LINK C MSE B 458 N LYS B 459 1555 1555 1.33 SITE 1 AC1 7 LYS A 31 GLU A 51 TYR A 134 HOH A 784 SITE 2 AC1 7 HOH A 944 HOH A1009 LYS B 241 SITE 1 AC2 4 GLU A 172 GLY A 173 LYS A 196 HOH A1067 SITE 1 AC3 6 LYS A 241 HOH A 765 HOH A 781 LYS B 31 SITE 2 AC3 6 GLU B 51 TYR B 134 SITE 1 AC4 7 GLN A 44 TYR A 146 ALA A 148 LEU A 149 SITE 2 AC4 7 ASP A 150 TYR A 292 HOH A 879 SITE 1 AC5 8 TYR A 29 LYS A 34 MSE A 50 GLU A 157 SITE 2 AC5 8 HOH A 601 HOH A 698 HOH A 704 HOH A1077 SITE 1 AC6 7 GOL A 10 THR A 37 HIS A 39 GLU A 45 SITE 2 AC6 7 HOH A 812 HOH A 918 SER B 383 SITE 1 AC7 9 GOL A 9 GLU A 45 ARG A 47 HOH A 650 SITE 2 AC7 9 HOH A 977 LYS B 375 SER B 383 HOH B 650 SITE 3 AC7 9 HOH B 692 SITE 1 AC8 10 PRO A 230 SER A 231 ASP A 339 HOH A 655 SITE 2 AC8 10 HOH A 968 HIS B 81 LYS B 94 HOH B 563 SITE 3 AC8 10 HOH B 652 HOH B1009 SITE 1 AC9 4 PRO A 105 ARG A 106 PHE A 107 GLU A 119 SITE 1 BC1 3 GLY A 179 LEU A 180 HOH A 545 SITE 1 BC2 6 HIS A 57 GLU A 128 LEU A 129 GLN B 465 SITE 2 BC2 6 GLU B 466 VAL B 468 SITE 1 BC3 7 ASN A 217 GLY A 334 HIS A 335 LEU A 373 SITE 2 BC3 7 GLN A 499 HOH A 678 HOH A 715 SITE 1 BC4 4 ASP A 97 PHE A 100 HOH A 992 HOH A1090 SITE 1 BC5 8 LEU A 315 LEU A 349 VAL A 351 LEU A 362 SITE 2 BC5 8 SER A 363 HOH A 775 HOH A 878 HOH A 985 SITE 1 BC6 4 GLU A 163 LYS A 165 ARG A 203 HOH A 886 SITE 1 BC7 5 HIS B 275 ASN B 279 HOH B 705 HOH B 732 SITE 2 BC7 5 HOH B 929 SITE 1 BC8 8 SER A 383 HOH A 716 GLU B 45 ARG B 47 SITE 2 BC8 8 GOL B 528 HOH B 706 HOH B 718 HOH B 865 SITE 1 BC9 5 GLU B 172 GLY B 173 LYS B 196 HOH B 565 SITE 2 BC9 5 HOH B1021 SITE 1 CC1 7 GLN B 44 TYR B 146 ALA B 148 LEU B 149 SITE 2 CC1 7 ASP B 150 TYR B 292 HOH B1026 SITE 1 CC2 6 PRO B 105 ARG B 106 PHE B 107 GLU B 119 SITE 2 CC2 6 HOH B1071 HOH B1088 SITE 1 CC3 5 TYR B 29 LYS B 34 MSE B 50 GLU B 157 SITE 2 CC3 5 HOH B 667 SITE 1 CC4 7 GLU A 466 GLN A 467 HIS B 57 GLU B 128 SITE 2 CC4 7 LEU B 129 HOH B 590 HOH B 656 SITE 1 CC5 10 HIS A 81 LYS A 94 HOH A 549 HOH A 557 SITE 2 CC5 10 HOH A 598 PRO B 230 SER B 231 ASP B 339 SITE 3 CC5 10 HOH B 619 HOH B 710 SITE 1 CC6 4 PHE B 213 GLN B 214 GLU B 439 HOH B 994 SITE 1 CC7 5 PRO B 308 LEU B 362 SER B 363 HOH B 795 SITE 2 CC7 5 HOH B 942 SITE 1 CC8 8 SER A 383 GLU A 385 PO4 B 4 THR B 37 SITE 2 CC8 8 HIS B 39 GLU B 45 HOH B 596 HOH B 822 SITE 1 CC9 6 ASP A 359 THR A 368 GLU A 387 HOH A 791 SITE 2 CC9 6 HIS B 192 ASP B 193 CRYST1 153.167 159.397 78.230 90.00 91.64 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006529 0.000000 0.000187 0.00000 SCALE2 0.000000 0.006274 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012788 0.00000