HEADER DE NOVO PROTEIN 22-OCT-09 3KD7 TITLE DESIGNED TPR MODULE (CTPR390) IN COMPLEX WITH ITS PEPTIDE-LIGAND TITLE 2 (HSP90 PEPTIDE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CTPR390; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HSP90 MEEVD PEPTIDE; COMPND 7 CHAIN: G, H, I, J, K; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: UNIDENTIFIED; SOURCE 3 ORGANISM_TAXID: 32644; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PPROEX-HTB; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 OTHER_DETAILS: THIS SEQUENCE COMPRISES THE 5 C-TERMINAL RESIDUES OF SOURCE 12 HSP90 KEYWDS DESIGNED PROTEIN, TETRATRICOPEPTIDE REPEAT (TPR), HSP90 BINDING, KEYWDS 2 REPEAT PROTEIN, TPR-LIGAND COMPLEX, SUPERHELICAL STRUCTURE, DE NOVO KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.L.CORTAJARENA,J.WANG,L.REGAN REVDAT 4 06-SEP-23 3KD7 1 LINK REVDAT 3 13-JUL-11 3KD7 1 VERSN REVDAT 2 23-FEB-10 3KD7 1 JRNL REVDAT 1 02-FEB-10 3KD7 0 JRNL AUTH A.L.CORTAJARENA,J.WANG,L.REGAN JRNL TITL CRYSTAL STRUCTURE OF A DESIGNED TETRATRICOPEPTIDE REPEAT JRNL TITL 2 MODULE IN COMPLEX WITH ITS PEPTIDE LIGAND. JRNL REF FEBS J. V. 277 1058 2010 JRNL REFN ISSN 1742-464X JRNL PMID 20089039 JRNL DOI 10.1111/J.1742-4658.2009.07549.X REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 13180 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.271 REMARK 3 R VALUE (WORKING SET) : 0.271 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 696 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.92 REMARK 3 REFLECTION IN BIN (WORKING SET) : 995 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.4360 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.4070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4416 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 17 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.31000 REMARK 3 B22 (A**2) : -2.31000 REMARK 3 B33 (A**2) : 3.47000 REMARK 3 B12 (A**2) : -1.16000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.479 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.363 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 39.581 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.885 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.875 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4521 ; 0.005 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6109 ; 0.708 ; 1.944 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 518 ; 3.838 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 269 ;31.298 ;25.762 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 728 ;16.230 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;17.565 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 556 ; 0.054 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3652 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1981 ; 0.156 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2995 ; 0.302 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 99 ; 0.121 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 65 ; 0.132 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.104 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2716 ; 2.735 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4119 ; 4.193 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2222 ; 2.622 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1990 ; 3.939 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C D E REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 24 A 106 4 REMARK 3 1 B 24 B 106 4 REMARK 3 1 C 24 C 106 4 REMARK 3 1 D 24 D 106 4 REMARK 3 1 E 24 E 106 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 630 ; 0.54 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 B (A): 630 ; 0.39 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 C (A): 630 ; 0.27 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 D (A): 630 ; 0.28 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 E (A): 630 ; 0.27 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 630 ; 0.27 ; 2.00 REMARK 3 MEDIUM THERMAL 1 B (A**2): 630 ; 0.22 ; 2.00 REMARK 3 MEDIUM THERMAL 1 C (A**2): 630 ; 0.18 ; 2.00 REMARK 3 MEDIUM THERMAL 1 D (A**2): 630 ; 0.20 ; 2.00 REMARK 3 MEDIUM THERMAL 1 E (A**2): 630 ; 0.21 ; 2.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : G H I J K REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 G 0 G 5 1 REMARK 3 1 H 0 H 5 1 REMARK 3 1 I 0 I 5 1 REMARK 3 1 J 0 J 5 1 REMARK 3 1 K 0 K 5 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 2 G (A): 45 ; 0.01 ; 0.05 REMARK 3 TIGHT POSITIONAL 2 H (A): 45 ; 0.01 ; 0.05 REMARK 3 TIGHT POSITIONAL 2 I (A): 45 ; 0.01 ; 0.05 REMARK 3 TIGHT POSITIONAL 2 J (A): 45 ; 0.01 ; 0.05 REMARK 3 TIGHT POSITIONAL 2 K (A): 45 ; 0.01 ; 0.05 REMARK 3 TIGHT THERMAL 2 G (A**2): 45 ; 0.01 ; 0.50 REMARK 3 TIGHT THERMAL 2 H (A**2): 45 ; 0.01 ; 0.50 REMARK 3 TIGHT THERMAL 2 I (A**2): 45 ; 0.01 ; 0.50 REMARK 3 TIGHT THERMAL 2 J (A**2): 45 ; 0.01 ; 0.50 REMARK 3 TIGHT THERMAL 2 K (A**2): 45 ; 0.01 ; 0.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 12 REMARK 3 ORIGIN FOR THE GROUP (A): -56.4795 -12.0904 14.1321 REMARK 3 T TENSOR REMARK 3 T11: 0.8135 T22: 0.4078 REMARK 3 T33: 0.7058 T12: 0.0517 REMARK 3 T13: 0.3581 T23: -0.1260 REMARK 3 L TENSOR REMARK 3 L11: 38.6740 L22: 26.6033 REMARK 3 L33: 69.6536 L12: 31.2568 REMARK 3 L13: -18.6843 L23: -24.1182 REMARK 3 S TENSOR REMARK 3 S11: 0.1391 S12: 1.6075 S13: 1.0828 REMARK 3 S21: 1.8295 S22: 1.1310 S23: 0.8219 REMARK 3 S31: 0.9247 S32: -0.9085 S33: -1.2700 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 13 A 36 REMARK 3 ORIGIN FOR THE GROUP (A): -46.3131 -6.0947 14.5746 REMARK 3 T TENSOR REMARK 3 T11: 0.4051 T22: 0.3028 REMARK 3 T33: 0.2801 T12: -0.0729 REMARK 3 T13: 0.0755 T23: 0.1357 REMARK 3 L TENSOR REMARK 3 L11: 12.2844 L22: 3.3105 REMARK 3 L33: 4.2001 L12: 5.9957 REMARK 3 L13: -0.1345 L23: 1.2043 REMARK 3 S TENSOR REMARK 3 S11: -0.3217 S12: -0.4755 S13: -0.3870 REMARK 3 S21: 0.5201 S22: 0.4437 S23: -0.0938 REMARK 3 S31: 0.2731 S32: -0.5304 S33: -0.1220 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 37 A 108 REMARK 3 ORIGIN FOR THE GROUP (A): -43.3298 -1.0666 -1.9050 REMARK 3 T TENSOR REMARK 3 T11: 0.1678 T22: 0.2273 REMARK 3 T33: 0.3516 T12: 0.0723 REMARK 3 T13: 0.0359 T23: 0.1286 REMARK 3 L TENSOR REMARK 3 L11: 5.5199 L22: 6.2998 REMARK 3 L33: 5.0857 L12: 0.6272 REMARK 3 L13: -0.9233 L23: -3.6945 REMARK 3 S TENSOR REMARK 3 S11: 0.1648 S12: -0.2714 S13: -0.1314 REMARK 3 S21: 0.1828 S22: 0.3655 S23: 0.8530 REMARK 3 S31: 0.3554 S32: -0.2746 S33: -0.5303 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 23 B 41 REMARK 3 ORIGIN FOR THE GROUP (A): -17.9015 -12.2894 2.6151 REMARK 3 T TENSOR REMARK 3 T11: 0.4905 T22: 0.5539 REMARK 3 T33: 0.5997 T12: 0.2872 REMARK 3 T13: 0.0073 T23: -0.0372 REMARK 3 L TENSOR REMARK 3 L11: 9.0082 L22: 10.9327 REMARK 3 L33: 6.7608 L12: -4.4959 REMARK 3 L13: 7.8038 L23: -3.9531 REMARK 3 S TENSOR REMARK 3 S11: -1.4585 S12: 0.5737 S13: 1.3232 REMARK 3 S21: 1.8749 S22: 0.2166 S23: -0.1211 REMARK 3 S31: 0.1427 S32: 0.4243 S33: 1.2419 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 42 B 70 REMARK 3 ORIGIN FOR THE GROUP (A): -19.0211 -4.6722 -5.0986 REMARK 3 T TENSOR REMARK 3 T11: 0.2706 T22: 0.5584 REMARK 3 T33: 0.3768 T12: 0.2762 REMARK 3 T13: -0.1077 T23: -0.0356 REMARK 3 L TENSOR REMARK 3 L11: 12.9589 L22: 7.2689 REMARK 3 L33: 9.6944 L12: -9.4441 REMARK 3 L13: -1.6834 L23: -0.6863 REMARK 3 S TENSOR REMARK 3 S11: 0.0270 S12: -0.1096 S13: -0.1326 REMARK 3 S21: 0.0545 S22: 0.1705 S23: -0.6237 REMARK 3 S31: 0.5423 S32: 1.2632 S33: -0.1976 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 71 B 107 REMARK 3 ORIGIN FOR THE GROUP (A): -16.3297 -0.1978 -16.1433 REMARK 3 T TENSOR REMARK 3 T11: 0.3017 T22: 0.6950 REMARK 3 T33: 0.4514 T12: 0.1746 REMARK 3 T13: 0.1176 T23: 0.0435 REMARK 3 L TENSOR REMARK 3 L11: 4.5907 L22: 3.1149 REMARK 3 L33: 8.3949 L12: -3.6505 REMARK 3 L13: 0.8898 L23: 0.6128 REMARK 3 S TENSOR REMARK 3 S11: 0.0460 S12: 0.0690 S13: 0.1892 REMARK 3 S21: -0.2414 S22: 0.1322 S23: -0.8048 REMARK 3 S31: 0.2353 S32: 1.4176 S33: -0.1782 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 7 C 22 REMARK 3 ORIGIN FOR THE GROUP (A): -51.2116 -8.0869 -30.3891 REMARK 3 T TENSOR REMARK 3 T11: 0.6287 T22: 0.2266 REMARK 3 T33: 0.6258 T12: -0.0501 REMARK 3 T13: 0.3437 T23: 0.0357 REMARK 3 L TENSOR REMARK 3 L11: 16.5658 L22: 5.2016 REMARK 3 L33: 9.8328 L12: -5.7342 REMARK 3 L13: 8.2787 L23: -7.1460 REMARK 3 S TENSOR REMARK 3 S11: -1.8932 S12: 0.2514 S13: -1.3906 REMARK 3 S21: 0.3911 S22: 0.4055 S23: -0.9912 REMARK 3 S31: -0.0574 S32: -0.6734 S33: 1.4878 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 23 C 46 REMARK 3 ORIGIN FOR THE GROUP (A): -56.9254 -7.4449 -25.0961 REMARK 3 T TENSOR REMARK 3 T11: 0.3775 T22: 0.5132 REMARK 3 T33: 0.5490 T12: -0.0577 REMARK 3 T13: 0.1090 T23: 0.0588 REMARK 3 L TENSOR REMARK 3 L11: 2.6146 L22: 12.5377 REMARK 3 L33: 5.1669 L12: -2.6398 REMARK 3 L13: -3.0215 L23: -1.0162 REMARK 3 S TENSOR REMARK 3 S11: -0.4716 S12: -0.0356 S13: -1.4287 REMARK 3 S21: -0.1090 S22: -0.1663 S23: -0.0271 REMARK 3 S31: 1.1550 S32: -0.4743 S33: 0.6379 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 47 C 107 REMARK 3 ORIGIN FOR THE GROUP (A): -65.0527 7.1160 -28.6532 REMARK 3 T TENSOR REMARK 3 T11: 0.3997 T22: 0.5546 REMARK 3 T33: 0.1887 T12: 0.0128 REMARK 3 T13: 0.0156 T23: 0.0059 REMARK 3 L TENSOR REMARK 3 L11: 7.7275 L22: 8.8636 REMARK 3 L33: 5.7130 L12: -7.1212 REMARK 3 L13: 4.4337 L23: -5.5300 REMARK 3 S TENSOR REMARK 3 S11: -0.4026 S12: 0.0914 S13: -0.2343 REMARK 3 S21: -0.0021 S22: 0.4002 S23: 0.3868 REMARK 3 S31: 0.0987 S32: -0.4323 S33: 0.0025 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 7 D 15 REMARK 3 ORIGIN FOR THE GROUP (A): -41.1487 14.3913 -4.1279 REMARK 3 T TENSOR REMARK 3 T11: 0.4765 T22: 0.7081 REMARK 3 T33: 0.8777 T12: -0.1754 REMARK 3 T13: 0.0472 T23: -0.1822 REMARK 3 L TENSOR REMARK 3 L11: 2.9177 L22: 44.4859 REMARK 3 L33: 0.4832 L12: 11.3927 REMARK 3 L13: -1.1874 L23: -4.6365 REMARK 3 S TENSOR REMARK 3 S11: 2.4213 S12: -0.1895 S13: 2.7952 REMARK 3 S21: 0.7124 S22: 0.6369 S23: 1.5755 REMARK 3 S31: 2.2293 S32: -0.4060 S33: -3.0582 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 16 D 46 REMARK 3 ORIGIN FOR THE GROUP (A): -35.6786 18.7584 -8.6020 REMARK 3 T TENSOR REMARK 3 T11: 0.2072 T22: 0.3914 REMARK 3 T33: 0.5779 T12: 0.0493 REMARK 3 T13: -0.0052 T23: 0.2618 REMARK 3 L TENSOR REMARK 3 L11: 7.0768 L22: 6.6165 REMARK 3 L33: 2.8522 L12: 6.8050 REMARK 3 L13: 0.5277 L23: 0.0548 REMARK 3 S TENSOR REMARK 3 S11: 0.1673 S12: 0.1032 S13: 0.8918 REMARK 3 S21: -0.0086 S22: 0.0053 S23: 1.5355 REMARK 3 S31: 0.4542 S32: -0.0339 S33: -0.1725 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 47 D 107 REMARK 3 ORIGIN FOR THE GROUP (A): -22.2516 27.0368 -2.3855 REMARK 3 T TENSOR REMARK 3 T11: 0.3602 T22: 0.5395 REMARK 3 T33: 0.3874 T12: -0.0349 REMARK 3 T13: 0.0323 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 13.3960 L22: 7.1755 REMARK 3 L33: 0.7789 L12: -0.0951 REMARK 3 L13: 1.9664 L23: 0.2803 REMARK 3 S TENSOR REMARK 3 S11: -0.1335 S12: -0.9696 S13: 1.2875 REMARK 3 S21: 0.3991 S22: 0.4559 S23: 0.3742 REMARK 3 S31: -0.2082 S32: 0.2097 S33: -0.3224 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 8 E 21 REMARK 3 ORIGIN FOR THE GROUP (A): -22.5670 -2.8729 -25.2724 REMARK 3 T TENSOR REMARK 3 T11: 0.4284 T22: 0.6284 REMARK 3 T33: -0.1074 T12: 0.2536 REMARK 3 T13: 0.1700 T23: 0.0677 REMARK 3 L TENSOR REMARK 3 L11: 26.4660 L22: 18.8700 REMARK 3 L33: 10.2968 L12: -9.7593 REMARK 3 L13: 10.4835 L23: 0.5298 REMARK 3 S TENSOR REMARK 3 S11: 0.3733 S12: 0.1450 S13: -0.6733 REMARK 3 S21: -0.1089 S22: -0.3755 S23: 0.2080 REMARK 3 S31: 0.3144 S32: 0.6187 S33: 0.0023 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 22 E 46 REMARK 3 ORIGIN FOR THE GROUP (A): -22.2036 -4.9452 -32.1494 REMARK 3 T TENSOR REMARK 3 T11: 0.6308 T22: 0.5644 REMARK 3 T33: 0.3168 T12: 0.3233 REMARK 3 T13: 0.3179 T23: -0.0504 REMARK 3 L TENSOR REMARK 3 L11: 8.4321 L22: 3.4379 REMARK 3 L33: 3.0302 L12: -3.7522 REMARK 3 L13: 5.0150 L23: -2.5218 REMARK 3 S TENSOR REMARK 3 S11: -0.0294 S12: 0.0246 S13: -0.4673 REMARK 3 S21: 0.4550 S22: 0.1738 S23: -0.3692 REMARK 3 S31: 0.0807 S32: 1.2875 S33: -0.1444 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 47 E 107 REMARK 3 ORIGIN FOR THE GROUP (A): -38.2961 -10.6950 -34.1447 REMARK 3 T TENSOR REMARK 3 T11: 0.7523 T22: 0.3398 REMARK 3 T33: 0.5321 T12: 0.1450 REMARK 3 T13: 0.2781 T23: -0.1214 REMARK 3 L TENSOR REMARK 3 L11: 6.0543 L22: 3.5843 REMARK 3 L33: 0.7433 L12: 0.8000 REMARK 3 L13: 0.8219 L23: -0.1733 REMARK 3 S TENSOR REMARK 3 S11: -0.4090 S12: 0.3230 S13: -1.2741 REMARK 3 S21: -0.2583 S22: 0.3043 S23: 0.1668 REMARK 3 S31: 0.6830 S32: 0.0742 S33: 0.1047 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3KD7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-NOV-09. REMARK 100 THE DEPOSITION ID IS D_1000055844. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 10.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X12C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1001 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13180 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 76.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : 0.07500 REMARK 200 FOR THE DATA SET : 21.1800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.28 REMARK 200 R MERGE FOR SHELL (I) : 0.39700 REMARK 200 R SYM FOR SHELL (I) : 0.39700 REMARK 200 FOR SHELL : 1.160 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1NA0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM NAH2PO4, 20% (W/V) PEG 20000, 50 REMARK 280 MM CAPS, PH 10.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 50.33700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.06208 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 53.85800 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 50.33700 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 29.06208 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 53.85800 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 50.33700 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 29.06208 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 53.85800 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 58.12416 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 107.71600 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 58.12416 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 107.71600 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 58.12416 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 107.71600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, K REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 ALA A 2 REMARK 465 MET A 3 REMARK 465 ASP A 4 REMARK 465 PRO A 5 REMARK 465 GLY A 6 REMARK 465 ASN A 109 REMARK 465 ASN A 110 REMARK 465 ALA A 111 REMARK 465 LYS A 112 REMARK 465 ALA A 113 REMARK 465 LYS A 114 REMARK 465 GLN A 115 REMARK 465 ASN A 116 REMARK 465 LEU A 117 REMARK 465 GLY A 118 REMARK 465 ASN A 119 REMARK 465 ALA A 120 REMARK 465 LYS A 121 REMARK 465 GLN A 122 REMARK 465 LYS A 123 REMARK 465 GLN A 124 REMARK 465 GLY A 125 REMARK 465 GLY B 1 REMARK 465 ALA B 2 REMARK 465 MET B 3 REMARK 465 ASP B 4 REMARK 465 PRO B 5 REMARK 465 GLY B 6 REMARK 465 ASN B 7 REMARK 465 PRO B 108 REMARK 465 ASN B 109 REMARK 465 ASN B 110 REMARK 465 ALA B 111 REMARK 465 LYS B 112 REMARK 465 ALA B 113 REMARK 465 LYS B 114 REMARK 465 GLN B 115 REMARK 465 ASN B 116 REMARK 465 LEU B 117 REMARK 465 GLY B 118 REMARK 465 ASN B 119 REMARK 465 ALA B 120 REMARK 465 LYS B 121 REMARK 465 GLN B 122 REMARK 465 LYS B 123 REMARK 465 GLN B 124 REMARK 465 GLY B 125 REMARK 465 GLY C 1 REMARK 465 ALA C 2 REMARK 465 MET C 3 REMARK 465 ASP C 4 REMARK 465 PRO C 5 REMARK 465 GLY C 6 REMARK 465 PRO C 108 REMARK 465 ASN C 109 REMARK 465 ASN C 110 REMARK 465 ALA C 111 REMARK 465 LYS C 112 REMARK 465 ALA C 113 REMARK 465 LYS C 114 REMARK 465 GLN C 115 REMARK 465 ASN C 116 REMARK 465 LEU C 117 REMARK 465 GLY C 118 REMARK 465 ASN C 119 REMARK 465 ALA C 120 REMARK 465 LYS C 121 REMARK 465 GLN C 122 REMARK 465 LYS C 123 REMARK 465 GLN C 124 REMARK 465 GLY C 125 REMARK 465 GLY D 1 REMARK 465 ALA D 2 REMARK 465 MET D 3 REMARK 465 ASP D 4 REMARK 465 PRO D 5 REMARK 465 GLY D 6 REMARK 465 PRO D 108 REMARK 465 ASN D 109 REMARK 465 ASN D 110 REMARK 465 ALA D 111 REMARK 465 LYS D 112 REMARK 465 ALA D 113 REMARK 465 LYS D 114 REMARK 465 GLN D 115 REMARK 465 ASN D 116 REMARK 465 LEU D 117 REMARK 465 GLY D 118 REMARK 465 ASN D 119 REMARK 465 ALA D 120 REMARK 465 LYS D 121 REMARK 465 GLN D 122 REMARK 465 LYS D 123 REMARK 465 GLN D 124 REMARK 465 GLY D 125 REMARK 465 GLY E 1 REMARK 465 ALA E 2 REMARK 465 MET E 3 REMARK 465 ASP E 4 REMARK 465 PRO E 5 REMARK 465 GLY E 6 REMARK 465 ASN E 7 REMARK 465 PRO E 108 REMARK 465 ASN E 109 REMARK 465 ASN E 110 REMARK 465 ALA E 111 REMARK 465 LYS E 112 REMARK 465 ALA E 113 REMARK 465 LYS E 114 REMARK 465 GLN E 115 REMARK 465 ASN E 116 REMARK 465 LEU E 117 REMARK 465 GLY E 118 REMARK 465 ASN E 119 REMARK 465 ALA E 120 REMARK 465 LYS E 121 REMARK 465 GLN E 122 REMARK 465 LYS E 123 REMARK 465 GLN E 124 REMARK 465 GLY E 125 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 27 CG CD CE NZ REMARK 470 LYS B 34 CG CD CE NZ REMARK 470 LEU B 36 CG CD1 CD2 REMARK 470 GLU B 37 CG CD OE1 OE2 REMARK 470 LEU B 38 CG CD1 CD2 REMARK 470 TYR C 100 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN D 60 CG CD OE1 NE2 REMARK 470 LEU E 15 CG CD1 CD2 REMARK 470 GLN E 60 CG CD OE1 NE2 REMARK 470 LYS E 68 CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 26 NE2 REMARK 480 GLN A 94 NE2 REMARK 480 GLN B 60 NE2 REMARK 480 GLN B 94 NE2 REMARK 480 GLN C 26 NE2 REMARK 480 GLN C 94 NE2 REMARK 480 GLN D 26 NE2 REMARK 480 GLN D 94 NE2 REMARK 480 GLN E 26 NE2 REMARK 480 GLN E 94 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N ALA B 9 O HOH B 130 1.08 REMARK 500 CB LEU B 36 O ASP B 39 1.82 REMARK 500 C SER B 8 O HOH B 130 1.85 REMARK 500 CA ALA B 9 O HOH B 130 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO B 40 CD PRO B 40 N 0.100 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 40 C - N - CD ANGL. DEV. = -14.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 24 79.30 -103.02 REMARK 500 ASN A 42 109.27 -59.71 REMARK 500 GLU B 37 -121.09 58.14 REMARK 500 ALA C 9 -89.81 77.73 REMARK 500 ASN C 76 91.70 -68.78 REMARK 500 GLU E 10 21.94 -147.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 7 SER A 8 -147.53 REMARK 500 LEU B 36 GLU B 37 -30.54 REMARK 500 ALA E 9 GLU E 10 -128.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 GLN A 94 0.07 SIDE CHAIN REMARK 500 GLN C 94 0.09 SIDE CHAIN REMARK 500 GLN D 94 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1NA0 RELATED DB: PDB REMARK 900 DESIGNED SCAFFOLD CTPR3 REMARK 900 RELATED ID: 1NA3 RELATED DB: PDB REMARK 900 DESIGNED SCAFFOLD CTPR2 REMARK 900 RELATED ID: 2AVP RELATED DB: PDB REMARK 900 DESIGNED CTPR8 SUPERHELIX REMARK 900 RELATED ID: 1ELR RELATED DB: PDB REMARK 900 TPR2A DOMAIN IN COMPLEX WITH HSP90 PEPTIDE REMARK 900 RELATED ID: 3FWV RELATED DB: PDB REMARK 900 REDESIGNED TPR PROTEIN IN COMPLEX WITH MEEVF PEPTIDE REMARK 900 RELATED ID: 1ELW RELATED DB: PDB REMARK 900 TPR1 DOMAIN IN COMPLEX WITH HSP70 PEPTIDE REMARK 900 RELATED ID: 2C2L RELATED DB: PDB REMARK 900 CHIP UBIQUITIN LIGASE IN COMPLEX WITH HSP90 PEPTIDE DBREF 3KD7 A 1 125 PDB 3KD7 3KD7 1 125 DBREF 3KD7 B 1 125 PDB 3KD7 3KD7 1 125 DBREF 3KD7 C 1 125 PDB 3KD7 3KD7 1 125 DBREF 3KD7 D 1 125 PDB 3KD7 3KD7 1 125 DBREF 3KD7 E 1 125 PDB 3KD7 3KD7 1 125 DBREF 3KD7 G 0 5 PDB 3KD7 3KD7 0 5 DBREF 3KD7 H 0 5 PDB 3KD7 3KD7 0 5 DBREF 3KD7 I 0 5 PDB 3KD7 3KD7 0 5 DBREF 3KD7 J 0 5 PDB 3KD7 3KD7 0 5 DBREF 3KD7 K 0 5 PDB 3KD7 3KD7 0 5 SEQRES 1 A 125 GLY ALA MET ASP PRO GLY ASN SER ALA GLU ALA TRP LYS SEQRES 2 A 125 ASN LEU GLY ASN ALA TYR TYR LYS GLN GLY ASP TYR GLN SEQRES 3 A 125 LYS ALA ILE GLU TYR TYR GLN LYS ALA LEU GLU LEU ASP SEQRES 4 A 125 PRO ASN ASN ALA SER ALA TRP TYR ASN LEU GLY ASN ALA SEQRES 5 A 125 TYR TYR LYS GLN GLY ASP TYR GLN LYS ALA ILE GLU TYR SEQRES 6 A 125 TYR GLN LYS ALA LEU GLU LEU ASP PRO ASN ASN ALA LYS SEQRES 7 A 125 ALA TRP TYR ARG ARG GLY ASN ALA TYR TYR LYS GLN GLY SEQRES 8 A 125 ASP TYR GLN LYS ALA ILE GLU ASP TYR GLN LYS ALA LEU SEQRES 9 A 125 GLU LEU ASP PRO ASN ASN ALA LYS ALA LYS GLN ASN LEU SEQRES 10 A 125 GLY ASN ALA LYS GLN LYS GLN GLY SEQRES 1 B 125 GLY ALA MET ASP PRO GLY ASN SER ALA GLU ALA TRP LYS SEQRES 2 B 125 ASN LEU GLY ASN ALA TYR TYR LYS GLN GLY ASP TYR GLN SEQRES 3 B 125 LYS ALA ILE GLU TYR TYR GLN LYS ALA LEU GLU LEU ASP SEQRES 4 B 125 PRO ASN ASN ALA SER ALA TRP TYR ASN LEU GLY ASN ALA SEQRES 5 B 125 TYR TYR LYS GLN GLY ASP TYR GLN LYS ALA ILE GLU TYR SEQRES 6 B 125 TYR GLN LYS ALA LEU GLU LEU ASP PRO ASN ASN ALA LYS SEQRES 7 B 125 ALA TRP TYR ARG ARG GLY ASN ALA TYR TYR LYS GLN GLY SEQRES 8 B 125 ASP TYR GLN LYS ALA ILE GLU ASP TYR GLN LYS ALA LEU SEQRES 9 B 125 GLU LEU ASP PRO ASN ASN ALA LYS ALA LYS GLN ASN LEU SEQRES 10 B 125 GLY ASN ALA LYS GLN LYS GLN GLY SEQRES 1 C 125 GLY ALA MET ASP PRO GLY ASN SER ALA GLU ALA TRP LYS SEQRES 2 C 125 ASN LEU GLY ASN ALA TYR TYR LYS GLN GLY ASP TYR GLN SEQRES 3 C 125 LYS ALA ILE GLU TYR TYR GLN LYS ALA LEU GLU LEU ASP SEQRES 4 C 125 PRO ASN ASN ALA SER ALA TRP TYR ASN LEU GLY ASN ALA SEQRES 5 C 125 TYR TYR LYS GLN GLY ASP TYR GLN LYS ALA ILE GLU TYR SEQRES 6 C 125 TYR GLN LYS ALA LEU GLU LEU ASP PRO ASN ASN ALA LYS SEQRES 7 C 125 ALA TRP TYR ARG ARG GLY ASN ALA TYR TYR LYS GLN GLY SEQRES 8 C 125 ASP TYR GLN LYS ALA ILE GLU ASP TYR GLN LYS ALA LEU SEQRES 9 C 125 GLU LEU ASP PRO ASN ASN ALA LYS ALA LYS GLN ASN LEU SEQRES 10 C 125 GLY ASN ALA LYS GLN LYS GLN GLY SEQRES 1 D 125 GLY ALA MET ASP PRO GLY ASN SER ALA GLU ALA TRP LYS SEQRES 2 D 125 ASN LEU GLY ASN ALA TYR TYR LYS GLN GLY ASP TYR GLN SEQRES 3 D 125 LYS ALA ILE GLU TYR TYR GLN LYS ALA LEU GLU LEU ASP SEQRES 4 D 125 PRO ASN ASN ALA SER ALA TRP TYR ASN LEU GLY ASN ALA SEQRES 5 D 125 TYR TYR LYS GLN GLY ASP TYR GLN LYS ALA ILE GLU TYR SEQRES 6 D 125 TYR GLN LYS ALA LEU GLU LEU ASP PRO ASN ASN ALA LYS SEQRES 7 D 125 ALA TRP TYR ARG ARG GLY ASN ALA TYR TYR LYS GLN GLY SEQRES 8 D 125 ASP TYR GLN LYS ALA ILE GLU ASP TYR GLN LYS ALA LEU SEQRES 9 D 125 GLU LEU ASP PRO ASN ASN ALA LYS ALA LYS GLN ASN LEU SEQRES 10 D 125 GLY ASN ALA LYS GLN LYS GLN GLY SEQRES 1 E 125 GLY ALA MET ASP PRO GLY ASN SER ALA GLU ALA TRP LYS SEQRES 2 E 125 ASN LEU GLY ASN ALA TYR TYR LYS GLN GLY ASP TYR GLN SEQRES 3 E 125 LYS ALA ILE GLU TYR TYR GLN LYS ALA LEU GLU LEU ASP SEQRES 4 E 125 PRO ASN ASN ALA SER ALA TRP TYR ASN LEU GLY ASN ALA SEQRES 5 E 125 TYR TYR LYS GLN GLY ASP TYR GLN LYS ALA ILE GLU TYR SEQRES 6 E 125 TYR GLN LYS ALA LEU GLU LEU ASP PRO ASN ASN ALA LYS SEQRES 7 E 125 ALA TRP TYR ARG ARG GLY ASN ALA TYR TYR LYS GLN GLY SEQRES 8 E 125 ASP TYR GLN LYS ALA ILE GLU ASP TYR GLN LYS ALA LEU SEQRES 9 E 125 GLU LEU ASP PRO ASN ASN ALA LYS ALA LYS GLN ASN LEU SEQRES 10 E 125 GLY ASN ALA LYS GLN LYS GLN GLY SEQRES 1 G 6 ACE MET GLU GLU VAL ASP SEQRES 1 H 6 ACE MET GLU GLU VAL ASP SEQRES 1 I 6 ACE MET GLU GLU VAL ASP SEQRES 1 J 6 ACE MET GLU GLU VAL ASP SEQRES 1 K 6 ACE MET GLU GLU VAL ASP HET ACE G 0 3 HET ACE H 0 3 HET ACE I 0 3 HET ACE J 0 3 HET ACE K 0 3 HETNAM ACE ACETYL GROUP FORMUL 6 ACE 5(C2 H4 O) FORMUL 11 HOH *17(H2 O) HELIX 1 1 SER A 8 GLN A 22 1 15 HELIX 2 2 ASP A 24 ASP A 39 1 16 HELIX 3 3 ASN A 42 GLY A 57 1 16 HELIX 4 4 ASP A 58 ASP A 73 1 16 HELIX 5 5 ASN A 76 GLN A 90 1 15 HELIX 6 6 ASP A 92 GLU A 105 1 14 HELIX 7 7 GLU B 10 GLN B 22 1 13 HELIX 8 8 TYR B 25 LYS B 34 1 10 HELIX 9 9 LYS B 34 ASP B 39 1 6 HELIX 10 10 ASN B 42 GLY B 57 1 16 HELIX 11 11 ASP B 58 ASP B 73 1 16 HELIX 12 12 ASN B 76 GLY B 91 1 16 HELIX 13 13 ASP B 92 ASP B 107 1 16 HELIX 14 14 ALA C 9 GLY C 23 1 15 HELIX 15 15 ASP C 24 ASP C 39 1 16 HELIX 16 16 ASN C 42 GLY C 57 1 16 HELIX 17 17 ASP C 58 GLU C 71 1 14 HELIX 18 18 ASN C 76 GLY C 91 1 16 HELIX 19 19 ASP C 92 ASP C 107 1 16 HELIX 20 20 ASN D 7 GLY D 23 1 17 HELIX 21 21 ASP D 24 GLU D 37 1 14 HELIX 22 22 ASN D 42 GLY D 57 1 16 HELIX 23 23 ASP D 58 ASP D 73 1 16 HELIX 24 24 ASN D 76 GLY D 91 1 16 HELIX 25 25 ASP D 92 LEU D 106 1 15 HELIX 26 26 GLU E 10 GLN E 22 1 13 HELIX 27 27 ASP E 24 ASP E 39 1 16 HELIX 28 28 ASN E 42 GLN E 56 1 15 HELIX 29 29 ASP E 58 ASP E 73 1 16 HELIX 30 30 ASN E 76 GLY E 91 1 16 HELIX 31 31 ASP E 92 GLU E 105 1 14 LINK C ACE G 0 N MET G 1 1555 1555 1.33 LINK C ACE H 0 N MET H 1 1555 1555 1.33 LINK C ACE I 0 N MET I 1 1555 1555 1.33 LINK C ACE J 0 N MET J 1 1555 1555 1.33 LINK C ACE K 0 N MET K 1 1555 1555 1.33 CISPEP 1 SER C 8 ALA C 9 0 0.04 CRYST1 100.674 100.674 161.574 90.00 90.00 120.00 H 3 45 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009933 0.005735 0.000000 0.00000 SCALE2 0.000000 0.011470 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006189 0.00000