data_3KDB # _entry.id 3KDB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.378 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3KDB pdb_00003kdb 10.2210/pdb3kdb/pdb RCSB RCSB055848 ? ? WWPDB D_1000055848 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3KDC 'The same protein complexed with KNI-10074' unspecified PDB 3KDD 'The same protein complexed with KNI-10265' unspecified PDB 2PK5 'The same protein complexed with KNI-10075' unspecified PDB 2PK6 'The same protein complexed with KNI-10033' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3KDB _pdbx_database_status.recvd_initial_deposition_date 2009-10-22 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chufan, E.E.' 1 'Lafont, V.' 2 'Freire, E.' 3 'Amzel, L.M.' 4 # _citation.id primary _citation.title 'How much binding affinity can be gained by filling a cavity?' _citation.journal_abbrev 'Chem.Biol.Drug Des.' _citation.journal_volume 75 _citation.page_first 143 _citation.page_last 151 _citation.year 2010 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1747-0277 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20028396 _citation.pdbx_database_id_DOI 10.1111/j.1747-0285.2009.00921.x # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kawasaki, Y.' 1 ? primary 'Chufan, E.E.' 2 ? primary 'Lafont, V.' 3 ? primary 'Hidaka, K.' 4 ? primary 'Kiso, Y.' 5 ? primary 'Mario Amzel, L.' 6 ? primary 'Freire, E.' 7 ? # _cell.entry_id 3KDB _cell.length_a 58.627 _cell.length_b 85.907 _cell.length_c 46.652 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3KDB _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Protease 10804.808 2 3.4.23.16 'Q7K, L33I, L63I' 'UNP residues 501-599' ? 2 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 3 non-polymer syn ;(4R)-3-[(2S,3S)-3-{[(2,6-dimethylphenoxy)acetyl]amino}-2-hydroxy-4-phenylbutanoyl]-N-[(1S,2R)-2-hydroxy-2,3-dihydro-1H-inden-1-yl]-5,5-dimethyl-1,3-thiazolidine-4-carboxamide ; 631.782 1 ? ? ? ? 4 water nat water 18.015 233 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Retropepsin, PR' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;PQITLWKRPLVTIKIGGQLKEALLDTGADDTVIEEMSLPGRWKPKMIGGIGGFIKVRQYDQIIIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF ; _entity_poly.pdbx_seq_one_letter_code_can ;PQITLWKRPLVTIKIGGQLKEALLDTGADDTVIEEMSLPGRWKPKMIGGIGGFIKVRQYDQIIIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 GLN n 1 3 ILE n 1 4 THR n 1 5 LEU n 1 6 TRP n 1 7 LYS n 1 8 ARG n 1 9 PRO n 1 10 LEU n 1 11 VAL n 1 12 THR n 1 13 ILE n 1 14 LYS n 1 15 ILE n 1 16 GLY n 1 17 GLY n 1 18 GLN n 1 19 LEU n 1 20 LYS n 1 21 GLU n 1 22 ALA n 1 23 LEU n 1 24 LEU n 1 25 ASP n 1 26 THR n 1 27 GLY n 1 28 ALA n 1 29 ASP n 1 30 ASP n 1 31 THR n 1 32 VAL n 1 33 ILE n 1 34 GLU n 1 35 GLU n 1 36 MET n 1 37 SER n 1 38 LEU n 1 39 PRO n 1 40 GLY n 1 41 ARG n 1 42 TRP n 1 43 LYS n 1 44 PRO n 1 45 LYS n 1 46 MET n 1 47 ILE n 1 48 GLY n 1 49 GLY n 1 50 ILE n 1 51 GLY n 1 52 GLY n 1 53 PHE n 1 54 ILE n 1 55 LYS n 1 56 VAL n 1 57 ARG n 1 58 GLN n 1 59 TYR n 1 60 ASP n 1 61 GLN n 1 62 ILE n 1 63 ILE n 1 64 ILE n 1 65 GLU n 1 66 ILE n 1 67 CYS n 1 68 GLY n 1 69 HIS n 1 70 LYS n 1 71 ALA n 1 72 ILE n 1 73 GLY n 1 74 THR n 1 75 VAL n 1 76 LEU n 1 77 VAL n 1 78 GLY n 1 79 PRO n 1 80 THR n 1 81 PRO n 1 82 VAL n 1 83 ASN n 1 84 ILE n 1 85 ILE n 1 86 GLY n 1 87 ARG n 1 88 ASN n 1 89 LEU n 1 90 LEU n 1 91 THR n 1 92 GLN n 1 93 ILE n 1 94 GLY n 1 95 CYS n 1 96 THR n 1 97 LEU n 1 98 ASN n 1 99 PHE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HIV-1 _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene gag-pol _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'SUBTYPE B' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Human immunodeficiency virus type 1' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 11686 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Bl21(de3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET24a+ _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code POL_HV1BR _struct_ref.pdbx_db_accession P03367 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF ; _struct_ref.pdbx_align_begin 501 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3KDB A 1 ? 99 ? P03367 501 ? 599 ? 1 99 2 1 3KDB B 1 ? 99 ? P03367 501 ? 599 ? 1 99 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3KDB LYS A 7 ? UNP P03367 GLN 507 'engineered mutation' 7 1 1 3KDB ILE A 33 ? UNP P03367 LEU 533 'engineered mutation' 33 2 1 3KDB ILE A 63 ? UNP P03367 LEU 563 'engineered mutation' 63 3 2 3KDB LYS B 7 ? UNP P03367 GLN 507 'engineered mutation' 7 4 2 3KDB ILE B 33 ? UNP P03367 LEU 533 'engineered mutation' 33 5 2 3KDB ILE B 63 ? UNP P03367 LEU 563 'engineered mutation' 63 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 006 peptide-like . ;(4R)-3-[(2S,3S)-3-{[(2,6-dimethylphenoxy)acetyl]amino}-2-hydroxy-4-phenylbutanoyl]-N-[(1S,2R)-2-hydroxy-2,3-dihydro-1H-inden-1-yl]-5,5-dimethyl-1,3-thiazolidine-4-carboxamide ; KNI-10006 'C35 H41 N3 O6 S' 631.782 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3KDB _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.72 _exptl_crystal.density_percent_sol 54.75 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.2 _exptl_crystal_grow.pdbx_details 'citrate buffer pH 6.2, NaCl 500 mM, 100 mM DTT, 3mM NaN3, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2007-04-14 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.54 # _reflns.entry_id 3KDB _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 48.45 _reflns.d_resolution_high 1.66 _reflns.number_obs 24519 _reflns.number_all ? _reflns.percent_possible_obs 85.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.06 _reflns.pdbx_netI_over_sigmaI 45.6 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.66 _reflns_shell.d_res_low 1.72 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.46 _reflns_shell.meanI_over_sigI_obs 3.9 _reflns_shell.pdbx_redundancy 4.9 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2793 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3KDB _refine.ls_number_reflns_obs 23172 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 48.45 _refine.ls_d_res_high 1.66 _refine.ls_percent_reflns_obs 85.64 _refine.ls_R_factor_obs 0.21410 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.21204 _refine.ls_R_factor_R_free 0.25502 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1242 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.957 _refine.correlation_coeff_Fo_to_Fc_free 0.942 _refine.B_iso_mean 25.863 _refine.aniso_B[1][1] 0.19 _refine.aniso_B[2][2] -0.85 _refine.aniso_B[3][3] 0.66 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB ENTRY 1MSM' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.133 _refine.pdbx_overall_ESU_R_Free 0.131 _refine.overall_SU_ML 0.072 _refine.overall_SU_B 2.077 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1516 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 51 _refine_hist.number_atoms_solvent 233 _refine_hist.number_atoms_total 1800 _refine_hist.d_res_high 1.66 _refine_hist.d_res_low 48.45 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.012 0.022 ? 1730 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.566 2.051 ? 2362 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.665 5.000 ? 215 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 39.992 24.615 ? 52 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.063 15.000 ? 310 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 11.235 15.000 ? 8 'X-RAY DIFFRACTION' ? r_chiral_restr 0.092 0.200 ? 276 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 1252 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.215 0.200 ? 854 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.307 0.200 ? 1197 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.142 0.200 ? 167 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.162 0.200 ? 39 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.138 0.200 ? 14 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.843 1.500 ? 1080 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.272 2.000 ? 1701 'X-RAY DIFFRACTION' ? r_scbond_it 1.970 3.000 ? 757 'X-RAY DIFFRACTION' ? r_scangle_it 2.902 4.500 ? 661 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.661 _refine_ls_shell.d_res_low 1.704 _refine_ls_shell.number_reflns_R_work 1950 _refine_ls_shell.R_factor_R_work 0.381 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.479 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 100 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3KDB _struct.title 'Crystal Structure of HIV-1 Protease (Q7K, L33I, L63I) in Complex with KNI-10006' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3KDB _struct_keywords.pdbx_keywords 'HYDROLASE/HYDROLASE INHIBITOR' _struct_keywords.text 'VIRAL PROTEIN, Hydrolase, Protease, HYDROLASE-HYDROLASE INHIBITOR complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 86 ? THR A 91 ? GLY A 86 THR A 91 1 ? 6 HELX_P HELX_P2 2 GLY B 86 ? ILE B 93 ? GLY B 86 ILE B 93 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 8 ? C ? 8 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? parallel B 4 5 ? anti-parallel B 5 6 ? parallel B 6 7 ? anti-parallel B 7 8 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? parallel C 4 5 ? anti-parallel C 5 6 ? parallel C 6 7 ? anti-parallel C 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 2 ? ILE A 3 ? GLN A 2 ILE A 3 A 2 THR B 96 ? ASN B 98 ? THR B 96 ASN B 98 A 3 THR A 96 ? ASN A 98 ? THR A 96 ASN A 98 A 4 GLN B 2 ? ILE B 3 ? GLN B 2 ILE B 3 B 1 TRP A 42 ? GLY A 49 ? TRP A 42 GLY A 49 B 2 GLY A 52 ? ILE A 66 ? GLY A 52 ILE A 66 B 3 HIS A 69 ? VAL A 77 ? HIS A 69 VAL A 77 B 4 VAL A 32 ? ILE A 33 ? VAL A 32 ILE A 33 B 5 ILE A 84 ? ILE A 85 ? ILE A 84 ILE A 85 B 6 GLN A 18 ? LEU A 24 ? GLN A 18 LEU A 24 B 7 LEU A 10 ? ILE A 15 ? LEU A 10 ILE A 15 B 8 GLY A 52 ? ILE A 66 ? GLY A 52 ILE A 66 C 1 LYS B 43 ? GLY B 49 ? LYS B 43 GLY B 49 C 2 GLY B 52 ? ILE B 66 ? GLY B 52 ILE B 66 C 3 HIS B 69 ? VAL B 77 ? HIS B 69 VAL B 77 C 4 VAL B 32 ? ILE B 33 ? VAL B 32 ILE B 33 C 5 ILE B 84 ? ILE B 85 ? ILE B 84 ILE B 85 C 6 GLN B 18 ? LEU B 24 ? GLN B 18 LEU B 24 C 7 LEU B 10 ? ILE B 15 ? LEU B 10 ILE B 15 C 8 GLY B 52 ? ILE B 66 ? GLY B 52 ILE B 66 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 3 ? N ILE A 3 O LEU B 97 ? O LEU B 97 A 2 3 O ASN B 98 ? O ASN B 98 N THR A 96 ? N THR A 96 A 3 4 N LEU A 97 ? N LEU A 97 O ILE B 3 ? O ILE B 3 B 1 2 N LYS A 43 ? N LYS A 43 O GLN A 58 ? O GLN A 58 B 2 3 N TYR A 59 ? N TYR A 59 O VAL A 75 ? O VAL A 75 B 3 4 O LEU A 76 ? O LEU A 76 N ILE A 33 ? N ILE A 33 B 4 5 N VAL A 32 ? N VAL A 32 O ILE A 84 ? O ILE A 84 B 5 6 O ILE A 85 ? O ILE A 85 N LEU A 23 ? N LEU A 23 B 6 7 O LYS A 20 ? O LYS A 20 N ILE A 13 ? N ILE A 13 B 7 8 N LYS A 14 ? N LYS A 14 O GLU A 65 ? O GLU A 65 C 1 2 N GLY B 49 ? N GLY B 49 O GLY B 52 ? O GLY B 52 C 2 3 N TYR B 59 ? N TYR B 59 O VAL B 75 ? O VAL B 75 C 3 4 O LEU B 76 ? O LEU B 76 N ILE B 33 ? N ILE B 33 C 4 5 N VAL B 32 ? N VAL B 32 O ILE B 84 ? O ILE B 84 C 5 6 O ILE B 85 ? O ILE B 85 N LEU B 23 ? N LEU B 23 C 6 7 O LYS B 20 ? O LYS B 20 N ILE B 13 ? N ILE B 13 C 7 8 N LYS B 14 ? N LYS B 14 O GLU B 65 ? O GLU B 65 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A GOL 100 ? 10 'BINDING SITE FOR RESIDUE GOL A 100' AC2 Software B 006 100 ? 31 'BINDING SITE FOR RESIDUE 006 B 100' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 GLN A 18 ? GLN A 18 . ? 1_555 ? 2 AC1 10 MET A 36 ? MET A 36 . ? 1_555 ? 3 AC1 10 SER A 37 ? SER A 37 . ? 1_555 ? 4 AC1 10 HOH E . ? HOH A 244 . ? 1_555 ? 5 AC1 10 THR B 12 ? THR B 12 . ? 1_554 ? 6 AC1 10 ILE B 13 ? ILE B 13 . ? 1_554 ? 7 AC1 10 LYS B 14 ? LYS B 14 . ? 1_554 ? 8 AC1 10 GLU B 65 ? GLU B 65 . ? 1_554 ? 9 AC1 10 CYS B 67 ? CYS B 67 . ? 1_554 ? 10 AC1 10 GLY B 68 ? GLY B 68 . ? 1_554 ? 11 AC2 31 LEU A 23 ? LEU A 23 . ? 1_555 ? 12 AC2 31 ASP A 25 ? ASP A 25 . ? 1_555 ? 13 AC2 31 GLY A 27 ? GLY A 27 . ? 1_555 ? 14 AC2 31 ALA A 28 ? ALA A 28 . ? 1_555 ? 15 AC2 31 ASP A 29 ? ASP A 29 . ? 1_555 ? 16 AC2 31 ASP A 30 ? ASP A 30 . ? 1_555 ? 17 AC2 31 VAL A 32 ? VAL A 32 . ? 1_555 ? 18 AC2 31 ILE A 47 ? ILE A 47 . ? 1_555 ? 19 AC2 31 GLY A 48 ? GLY A 48 . ? 1_555 ? 20 AC2 31 GLY A 49 ? GLY A 49 . ? 1_555 ? 21 AC2 31 ILE A 50 ? ILE A 50 . ? 1_555 ? 22 AC2 31 PRO A 81 ? PRO A 81 . ? 1_555 ? 23 AC2 31 ILE A 84 ? ILE A 84 . ? 1_555 ? 24 AC2 31 HOH E . ? HOH A 135 . ? 1_555 ? 25 AC2 31 LEU B 23 ? LEU B 23 . ? 1_555 ? 26 AC2 31 ASP B 25 ? ASP B 25 . ? 1_555 ? 27 AC2 31 GLY B 27 ? GLY B 27 . ? 1_555 ? 28 AC2 31 ALA B 28 ? ALA B 28 . ? 1_555 ? 29 AC2 31 ASP B 29 ? ASP B 29 . ? 1_555 ? 30 AC2 31 ASP B 30 ? ASP B 30 . ? 1_555 ? 31 AC2 31 VAL B 32 ? VAL B 32 . ? 1_555 ? 32 AC2 31 ILE B 47 ? ILE B 47 . ? 1_555 ? 33 AC2 31 GLY B 48 ? GLY B 48 . ? 1_555 ? 34 AC2 31 GLY B 49 ? GLY B 49 . ? 1_555 ? 35 AC2 31 ILE B 50 ? ILE B 50 . ? 1_555 ? 36 AC2 31 PRO B 81 ? PRO B 81 . ? 1_555 ? 37 AC2 31 VAL B 82 ? VAL B 82 . ? 1_555 ? 38 AC2 31 ILE B 84 ? ILE B 84 . ? 1_555 ? 39 AC2 31 HOH F . ? HOH B 147 . ? 1_555 ? 40 AC2 31 HOH F . ? HOH B 231 . ? 1_555 ? 41 AC2 31 HOH F . ? HOH B 245 . ? 1_555 ? # _database_PDB_matrix.entry_id 3KDB _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3KDB _atom_sites.fract_transf_matrix[1][1] 0.017057 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011640 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021435 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 1 1 PRO PRO A . n A 1 2 GLN 2 2 2 GLN GLN A . n A 1 3 ILE 3 3 3 ILE ILE A . n A 1 4 THR 4 4 4 THR THR A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 TRP 6 6 6 TRP TRP A . n A 1 7 LYS 7 7 7 LYS LYS A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 ILE 15 15 15 ILE ILE A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 GLN 18 18 18 GLN GLN A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 LYS 20 20 20 LYS LYS A . n A 1 21 GLU 21 21 21 GLU GLU A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 ASP 25 25 25 ASP ASP A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 ASP 29 29 29 ASP ASP A . n A 1 30 ASP 30 30 30 ASP ASP A . n A 1 31 THR 31 31 31 THR THR A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 ILE 33 33 33 ILE ILE A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 MET 36 36 36 MET MET A . n A 1 37 SER 37 37 37 SER SER A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 PRO 39 39 39 PRO PRO A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 ARG 41 41 41 ARG ARG A . n A 1 42 TRP 42 42 42 TRP TRP A . n A 1 43 LYS 43 43 43 LYS LYS A . n A 1 44 PRO 44 44 44 PRO PRO A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 MET 46 46 46 MET MET A . n A 1 47 ILE 47 47 47 ILE ILE A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 ILE 50 50 50 ILE ILE A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 GLY 52 52 52 GLY GLY A . n A 1 53 PHE 53 53 53 PHE PHE A . n A 1 54 ILE 54 54 54 ILE ILE A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 ARG 57 57 57 ARG ARG A . n A 1 58 GLN 58 58 58 GLN GLN A . n A 1 59 TYR 59 59 59 TYR TYR A . n A 1 60 ASP 60 60 60 ASP ASP A . n A 1 61 GLN 61 61 61 GLN GLN A . n A 1 62 ILE 62 62 62 ILE ILE A . n A 1 63 ILE 63 63 63 ILE ILE A . n A 1 64 ILE 64 64 64 ILE ILE A . n A 1 65 GLU 65 65 65 GLU GLU A . n A 1 66 ILE 66 66 66 ILE ILE A . n A 1 67 CYS 67 67 67 CYS CYS A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 HIS 69 69 69 HIS HIS A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 THR 74 74 74 THR THR A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 GLY 78 78 78 GLY GLY A . n A 1 79 PRO 79 79 79 PRO PRO A . n A 1 80 THR 80 80 80 THR THR A . n A 1 81 PRO 81 81 81 PRO PRO A . n A 1 82 VAL 82 82 82 VAL VAL A . n A 1 83 ASN 83 83 83 ASN ASN A . n A 1 84 ILE 84 84 84 ILE ILE A . n A 1 85 ILE 85 85 85 ILE ILE A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 ARG 87 87 87 ARG ARG A . n A 1 88 ASN 88 88 88 ASN ASN A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 THR 91 91 91 THR THR A . n A 1 92 GLN 92 92 92 GLN GLN A . n A 1 93 ILE 93 93 93 ILE ILE A . n A 1 94 GLY 94 94 94 GLY GLY A . n A 1 95 CYS 95 95 95 CYS CYS A . n A 1 96 THR 96 96 96 THR THR A . n A 1 97 LEU 97 97 97 LEU LEU A . n A 1 98 ASN 98 98 98 ASN ASN A . n A 1 99 PHE 99 99 99 PHE PHE A . n B 1 1 PRO 1 1 1 PRO PRO B . n B 1 2 GLN 2 2 2 GLN GLN B . n B 1 3 ILE 3 3 3 ILE ILE B . n B 1 4 THR 4 4 4 THR THR B . n B 1 5 LEU 5 5 5 LEU LEU B . n B 1 6 TRP 6 6 6 TRP TRP B . n B 1 7 LYS 7 7 7 LYS LYS B . n B 1 8 ARG 8 8 8 ARG ARG B . n B 1 9 PRO 9 9 9 PRO PRO B . n B 1 10 LEU 10 10 10 LEU LEU B . n B 1 11 VAL 11 11 11 VAL VAL B . n B 1 12 THR 12 12 12 THR THR B . n B 1 13 ILE 13 13 13 ILE ILE B . n B 1 14 LYS 14 14 14 LYS LYS B . n B 1 15 ILE 15 15 15 ILE ILE B . n B 1 16 GLY 16 16 16 GLY GLY B . n B 1 17 GLY 17 17 17 GLY GLY B . n B 1 18 GLN 18 18 18 GLN GLN B . n B 1 19 LEU 19 19 19 LEU LEU B . n B 1 20 LYS 20 20 20 LYS LYS B . n B 1 21 GLU 21 21 21 GLU GLU B . n B 1 22 ALA 22 22 22 ALA ALA B . n B 1 23 LEU 23 23 23 LEU LEU B . n B 1 24 LEU 24 24 24 LEU LEU B . n B 1 25 ASP 25 25 25 ASP ASP B . n B 1 26 THR 26 26 26 THR THR B . n B 1 27 GLY 27 27 27 GLY GLY B . n B 1 28 ALA 28 28 28 ALA ALA B . n B 1 29 ASP 29 29 29 ASP ASP B . n B 1 30 ASP 30 30 30 ASP ASP B . n B 1 31 THR 31 31 31 THR THR B . n B 1 32 VAL 32 32 32 VAL VAL B . n B 1 33 ILE 33 33 33 ILE ILE B . n B 1 34 GLU 34 34 34 GLU GLU B . n B 1 35 GLU 35 35 35 GLU GLU B . n B 1 36 MET 36 36 36 MET MET B . n B 1 37 SER 37 37 37 SER SER B . n B 1 38 LEU 38 38 38 LEU LEU B . n B 1 39 PRO 39 39 39 PRO PRO B . n B 1 40 GLY 40 40 40 GLY GLY B . n B 1 41 ARG 41 41 41 ARG ARG B . n B 1 42 TRP 42 42 42 TRP TRP B . n B 1 43 LYS 43 43 43 LYS LYS B . n B 1 44 PRO 44 44 44 PRO PRO B . n B 1 45 LYS 45 45 45 LYS LYS B . n B 1 46 MET 46 46 46 MET MET B . n B 1 47 ILE 47 47 47 ILE ILE B . n B 1 48 GLY 48 48 48 GLY GLY B . n B 1 49 GLY 49 49 49 GLY GLY B . n B 1 50 ILE 50 50 50 ILE ILE B . n B 1 51 GLY 51 51 51 GLY GLY B . n B 1 52 GLY 52 52 52 GLY GLY B . n B 1 53 PHE 53 53 53 PHE PHE B . n B 1 54 ILE 54 54 54 ILE ILE B . n B 1 55 LYS 55 55 55 LYS LYS B . n B 1 56 VAL 56 56 56 VAL VAL B . n B 1 57 ARG 57 57 57 ARG ARG B . n B 1 58 GLN 58 58 58 GLN GLN B . n B 1 59 TYR 59 59 59 TYR TYR B . n B 1 60 ASP 60 60 60 ASP ASP B . n B 1 61 GLN 61 61 61 GLN GLN B . n B 1 62 ILE 62 62 62 ILE ILE B . n B 1 63 ILE 63 63 63 ILE ILE B . n B 1 64 ILE 64 64 64 ILE ILE B . n B 1 65 GLU 65 65 65 GLU GLU B . n B 1 66 ILE 66 66 66 ILE ILE B . n B 1 67 CYS 67 67 67 CYS CYS B . n B 1 68 GLY 68 68 68 GLY GLY B . n B 1 69 HIS 69 69 69 HIS HIS B . n B 1 70 LYS 70 70 70 LYS LYS B . n B 1 71 ALA 71 71 71 ALA ALA B . n B 1 72 ILE 72 72 72 ILE ILE B . n B 1 73 GLY 73 73 73 GLY GLY B . n B 1 74 THR 74 74 74 THR THR B . n B 1 75 VAL 75 75 75 VAL VAL B . n B 1 76 LEU 76 76 76 LEU LEU B . n B 1 77 VAL 77 77 77 VAL VAL B . n B 1 78 GLY 78 78 78 GLY GLY B . n B 1 79 PRO 79 79 79 PRO PRO B . n B 1 80 THR 80 80 80 THR THR B . n B 1 81 PRO 81 81 81 PRO PRO B . n B 1 82 VAL 82 82 82 VAL VAL B . n B 1 83 ASN 83 83 83 ASN ASN B . n B 1 84 ILE 84 84 84 ILE ILE B . n B 1 85 ILE 85 85 85 ILE ILE B . n B 1 86 GLY 86 86 86 GLY GLY B . n B 1 87 ARG 87 87 87 ARG ARG B . n B 1 88 ASN 88 88 88 ASN ASN B . n B 1 89 LEU 89 89 89 LEU LEU B . n B 1 90 LEU 90 90 90 LEU LEU B . n B 1 91 THR 91 91 91 THR THR B . n B 1 92 GLN 92 92 92 GLN GLN B . n B 1 93 ILE 93 93 93 ILE ILE B . n B 1 94 GLY 94 94 94 GLY GLY B . n B 1 95 CYS 95 95 95 CYS CYS B . n B 1 96 THR 96 96 96 THR THR B . n B 1 97 LEU 97 97 97 LEU LEU B . n B 1 98 ASN 98 98 98 ASN ASN B . n B 1 99 PHE 99 99 99 PHE PHE B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL 1 100 1 GOL GOL A . D 3 006 1 100 1 006 006 B . E 4 HOH 1 102 102 HOH HOH A . E 4 HOH 2 103 4 HOH HOH A . E 4 HOH 3 104 104 HOH HOH A . E 4 HOH 4 105 7 HOH HOH A . E 4 HOH 5 106 8 HOH HOH A . E 4 HOH 6 107 107 HOH HOH A . E 4 HOH 7 108 11 HOH HOH A . E 4 HOH 8 109 12 HOH HOH A . E 4 HOH 9 110 110 HOH HOH A . E 4 HOH 10 111 111 HOH HOH A . E 4 HOH 11 112 112 HOH HOH A . E 4 HOH 12 113 14 HOH HOH A . E 4 HOH 13 114 114 HOH HOH A . E 4 HOH 14 115 16 HOH HOH A . E 4 HOH 15 116 21 HOH HOH A . E 4 HOH 16 117 23 HOH HOH A . E 4 HOH 17 118 24 HOH HOH A . E 4 HOH 18 119 119 HOH HOH A . E 4 HOH 19 120 26 HOH HOH A . E 4 HOH 20 121 27 HOH HOH A . E 4 HOH 21 122 30 HOH HOH A . E 4 HOH 22 123 33 HOH HOH A . E 4 HOH 23 124 34 HOH HOH A . E 4 HOH 24 126 126 HOH HOH A . E 4 HOH 25 127 40 HOH HOH A . E 4 HOH 26 128 43 HOH HOH A . E 4 HOH 27 129 129 HOH HOH A . E 4 HOH 28 130 130 HOH HOH A . E 4 HOH 29 131 47 HOH HOH A . E 4 HOH 30 132 132 HOH HOH A . E 4 HOH 31 133 49 HOH HOH A . E 4 HOH 32 134 134 HOH HOH A . E 4 HOH 33 135 135 HOH HOH A . E 4 HOH 34 136 51 HOH HOH A . E 4 HOH 35 137 53 HOH HOH A . E 4 HOH 36 138 138 HOH HOH A . E 4 HOH 37 139 139 HOH HOH A . E 4 HOH 38 140 140 HOH HOH A . E 4 HOH 39 141 141 HOH HOH A . E 4 HOH 40 142 142 HOH HOH A . E 4 HOH 41 143 54 HOH HOH A . E 4 HOH 42 144 55 HOH HOH A . E 4 HOH 43 145 145 HOH HOH A . E 4 HOH 44 146 146 HOH HOH A . E 4 HOH 45 147 147 HOH HOH A . E 4 HOH 46 148 56 HOH HOH A . E 4 HOH 47 149 60 HOH HOH A . E 4 HOH 48 150 150 HOH HOH A . E 4 HOH 49 151 62 HOH HOH A . E 4 HOH 50 152 63 HOH HOH A . E 4 HOH 51 153 65 HOH HOH A . E 4 HOH 52 154 154 HOH HOH A . E 4 HOH 53 155 155 HOH HOH A . E 4 HOH 54 156 156 HOH HOH A . E 4 HOH 55 157 66 HOH HOH A . E 4 HOH 56 158 68 HOH HOH A . E 4 HOH 57 159 159 HOH HOH A . E 4 HOH 58 160 71 HOH HOH A . E 4 HOH 59 161 72 HOH HOH A . E 4 HOH 60 162 162 HOH HOH A . E 4 HOH 61 163 73 HOH HOH A . E 4 HOH 62 164 78 HOH HOH A . E 4 HOH 63 165 80 HOH HOH A . E 4 HOH 64 166 82 HOH HOH A . E 4 HOH 65 167 167 HOH HOH A . E 4 HOH 66 168 168 HOH HOH A . E 4 HOH 67 169 88 HOH HOH A . E 4 HOH 68 170 170 HOH HOH A . E 4 HOH 69 171 171 HOH HOH A . E 4 HOH 70 172 172 HOH HOH A . E 4 HOH 71 173 89 HOH HOH A . E 4 HOH 72 174 90 HOH HOH A . E 4 HOH 73 175 175 HOH HOH A . E 4 HOH 74 176 93 HOH HOH A . E 4 HOH 75 177 99 HOH HOH A . E 4 HOH 76 178 178 HOH HOH A . E 4 HOH 77 179 179 HOH HOH A . E 4 HOH 78 183 183 HOH HOH A . E 4 HOH 79 184 184 HOH HOH A . E 4 HOH 80 187 187 HOH HOH A . E 4 HOH 81 188 188 HOH HOH A . E 4 HOH 82 190 84 HOH HOH A . E 4 HOH 83 191 191 HOH HOH A . E 4 HOH 84 193 193 HOH HOH A . E 4 HOH 85 195 195 HOH HOH A . E 4 HOH 86 197 197 HOH HOH A . E 4 HOH 87 198 198 HOH HOH A . E 4 HOH 88 199 199 HOH HOH A . E 4 HOH 89 202 202 HOH HOH A . E 4 HOH 90 204 204 HOH HOH A . E 4 HOH 91 205 205 HOH HOH A . E 4 HOH 92 206 206 HOH HOH A . E 4 HOH 93 207 207 HOH HOH A . E 4 HOH 94 208 208 HOH HOH A . E 4 HOH 95 209 209 HOH HOH A . E 4 HOH 96 210 210 HOH HOH A . E 4 HOH 97 212 212 HOH HOH A . E 4 HOH 98 214 214 HOH HOH A . E 4 HOH 99 217 217 HOH HOH A . E 4 HOH 100 219 219 HOH HOH A . E 4 HOH 101 220 220 HOH HOH A . E 4 HOH 102 221 221 HOH HOH A . E 4 HOH 103 222 222 HOH HOH A . E 4 HOH 104 224 224 HOH HOH A . E 4 HOH 105 228 228 HOH HOH A . E 4 HOH 106 234 234 HOH HOH A . E 4 HOH 107 235 235 HOH HOH A . E 4 HOH 108 244 244 HOH HOH A . F 4 HOH 1 101 101 HOH HOH B . F 4 HOH 2 102 2 HOH HOH B . F 4 HOH 3 103 103 HOH HOH B . F 4 HOH 4 104 3 HOH HOH B . F 4 HOH 5 105 105 HOH HOH B . F 4 HOH 6 106 106 HOH HOH B . F 4 HOH 7 107 5 HOH HOH B . F 4 HOH 8 108 108 HOH HOH B . F 4 HOH 9 109 109 HOH HOH B . F 4 HOH 10 110 6 HOH HOH B . F 4 HOH 11 111 9 HOH HOH B . F 4 HOH 12 112 10 HOH HOH B . F 4 HOH 13 113 113 HOH HOH B . F 4 HOH 14 114 13 HOH HOH B . F 4 HOH 15 115 115 HOH HOH B . F 4 HOH 16 116 15 HOH HOH B . F 4 HOH 17 117 117 HOH HOH B . F 4 HOH 18 118 118 HOH HOH B . F 4 HOH 19 119 17 HOH HOH B . F 4 HOH 20 120 120 HOH HOH B . F 4 HOH 21 121 121 HOH HOH B . F 4 HOH 22 122 122 HOH HOH B . F 4 HOH 23 123 123 HOH HOH B . F 4 HOH 24 124 124 HOH HOH B . F 4 HOH 25 125 125 HOH HOH B . F 4 HOH 26 126 19 HOH HOH B . F 4 HOH 27 127 127 HOH HOH B . F 4 HOH 28 128 128 HOH HOH B . F 4 HOH 29 129 20 HOH HOH B . F 4 HOH 30 130 22 HOH HOH B . F 4 HOH 31 131 131 HOH HOH B . F 4 HOH 32 132 25 HOH HOH B . F 4 HOH 33 133 133 HOH HOH B . F 4 HOH 34 134 28 HOH HOH B . F 4 HOH 35 135 29 HOH HOH B . F 4 HOH 36 136 136 HOH HOH B . F 4 HOH 37 137 137 HOH HOH B . F 4 HOH 38 138 31 HOH HOH B . F 4 HOH 39 139 32 HOH HOH B . F 4 HOH 40 140 35 HOH HOH B . F 4 HOH 41 141 37 HOH HOH B . F 4 HOH 42 142 38 HOH HOH B . F 4 HOH 43 143 143 HOH HOH B . F 4 HOH 44 144 144 HOH HOH B . F 4 HOH 45 145 39 HOH HOH B . F 4 HOH 46 146 41 HOH HOH B . F 4 HOH 47 147 42 HOH HOH B . F 4 HOH 48 148 148 HOH HOH B . F 4 HOH 49 149 149 HOH HOH B . F 4 HOH 50 150 45 HOH HOH B . F 4 HOH 51 151 151 HOH HOH B . F 4 HOH 52 152 152 HOH HOH B . F 4 HOH 53 153 153 HOH HOH B . F 4 HOH 54 154 46 HOH HOH B . F 4 HOH 55 155 50 HOH HOH B . F 4 HOH 56 156 52 HOH HOH B . F 4 HOH 57 157 157 HOH HOH B . F 4 HOH 58 158 158 HOH HOH B . F 4 HOH 59 159 57 HOH HOH B . F 4 HOH 60 160 160 HOH HOH B . F 4 HOH 61 161 161 HOH HOH B . F 4 HOH 62 162 58 HOH HOH B . F 4 HOH 63 163 163 HOH HOH B . F 4 HOH 64 164 164 HOH HOH B . F 4 HOH 65 165 165 HOH HOH B . F 4 HOH 66 166 166 HOH HOH B . F 4 HOH 67 167 59 HOH HOH B . F 4 HOH 68 168 61 HOH HOH B . F 4 HOH 69 169 169 HOH HOH B . F 4 HOH 70 170 64 HOH HOH B . F 4 HOH 71 171 67 HOH HOH B . F 4 HOH 72 172 69 HOH HOH B . F 4 HOH 73 173 173 HOH HOH B . F 4 HOH 74 174 70 HOH HOH B . F 4 HOH 75 175 74 HOH HOH B . F 4 HOH 76 176 176 HOH HOH B . F 4 HOH 77 177 177 HOH HOH B . F 4 HOH 78 178 75 HOH HOH B . F 4 HOH 79 179 76 HOH HOH B . F 4 HOH 80 180 180 HOH HOH B . F 4 HOH 81 181 181 HOH HOH B . F 4 HOH 82 182 182 HOH HOH B . F 4 HOH 83 183 77 HOH HOH B . F 4 HOH 84 184 79 HOH HOH B . F 4 HOH 85 185 185 HOH HOH B . F 4 HOH 86 186 186 HOH HOH B . F 4 HOH 87 187 81 HOH HOH B . F 4 HOH 88 188 83 HOH HOH B . F 4 HOH 89 189 189 HOH HOH B . F 4 HOH 90 190 1 HOH HOH B . F 4 HOH 91 191 85 HOH HOH B . F 4 HOH 92 192 192 HOH HOH B . F 4 HOH 93 193 86 HOH HOH B . F 4 HOH 94 194 194 HOH HOH B . F 4 HOH 95 195 87 HOH HOH B . F 4 HOH 96 196 196 HOH HOH B . F 4 HOH 97 197 91 HOH HOH B . F 4 HOH 98 198 92 HOH HOH B . F 4 HOH 99 199 94 HOH HOH B . F 4 HOH 100 200 200 HOH HOH B . F 4 HOH 101 201 201 HOH HOH B . F 4 HOH 102 202 95 HOH HOH B . F 4 HOH 103 203 203 HOH HOH B . F 4 HOH 104 204 96 HOH HOH B . F 4 HOH 105 205 97 HOH HOH B . F 4 HOH 106 206 98 HOH HOH B . F 4 HOH 107 207 100 HOH HOH B . F 4 HOH 108 208 18 HOH HOH B . F 4 HOH 109 211 211 HOH HOH B . F 4 HOH 110 213 213 HOH HOH B . F 4 HOH 111 215 215 HOH HOH B . F 4 HOH 112 216 216 HOH HOH B . F 4 HOH 113 218 218 HOH HOH B . F 4 HOH 114 223 223 HOH HOH B . F 4 HOH 115 225 225 HOH HOH B . F 4 HOH 116 227 227 HOH HOH B . F 4 HOH 117 229 229 HOH HOH B . F 4 HOH 118 231 231 HOH HOH B . F 4 HOH 119 232 232 HOH HOH B . F 4 HOH 120 233 233 HOH HOH B . F 4 HOH 121 236 236 HOH HOH B . F 4 HOH 122 238 238 HOH HOH B . F 4 HOH 123 239 239 HOH HOH B . F 4 HOH 124 240 240 HOH HOH B . F 4 HOH 125 245 245 HOH HOH B . # _pdbx_molecule_features.prd_id PRD_000575 _pdbx_molecule_features.name KNI-10006 _pdbx_molecule_features.type Peptide-like _pdbx_molecule_features.class Inhibitor _pdbx_molecule_features.details ? # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_000575 _pdbx_molecule.asym_id D # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4250 ? 1 MORE -25 ? 1 'SSA (A^2)' 9600 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-03-02 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2013-02-27 4 'Structure model' 1 3 2021-10-13 5 'Structure model' 1 4 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Atomic model' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Non-polymer description' 5 2 'Structure model' 'Structure summary' 6 2 'Structure model' 'Version format compliance' 7 3 'Structure model' Other 8 4 'Structure model' 'Database references' 9 4 'Structure model' 'Derived calculations' 10 5 'Structure model' 'Data collection' 11 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' struct_ref_seq_dif 3 4 'Structure model' struct_site 4 5 'Structure model' chem_comp_atom 5 5 'Structure model' chem_comp_bond 6 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 AMoRE phasing . ? 2 REFMAC refinement 5.2.0019 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id GLU _pdbx_validate_torsion.auth_asym_id B _pdbx_validate_torsion.auth_seq_id 35 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -39.22 _pdbx_validate_torsion.psi 125.50 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 006 N2 N N N 1 006 C20 C N S 2 006 O20 O N N 3 006 C21 C N N 4 006 O21 O N N 5 006 C22 C Y N 6 006 C23 C Y N 7 006 C24 C Y N 8 006 C25 C Y N 9 006 C26 C Y N 10 006 C27 C Y N 11 006 C28 C N S 12 006 C29 C N N 13 006 N30 N N N 14 006 O30 O N N 15 006 C31 C N S 16 006 C32 C Y N 17 006 C33 C Y N 18 006 C34 C Y N 19 006 C35 C N R 20 006 C36 C Y N 21 006 C37 C Y N 22 006 C38 C Y N 23 006 C39 C N N 24 006 C40 C Y N 25 006 O40 O N N 26 006 C41 C Y N 27 006 O41 O N N 28 006 C42 C Y N 29 006 C43 C N N 30 006 C44 C N N 31 006 C45 C Y N 32 006 C46 C Y N 33 006 C47 C Y N 34 006 C48 C N N 35 006 C49 C N N 36 006 C50 C N N 37 006 N50 N N N 38 006 O50 O N N 39 006 S50 S N N 40 006 C51 C N N 41 006 C52 C N N 42 006 C53 C N N 43 006 C54 C N R 44 006 C55 C N N 45 006 HN2 H N N 46 006 H20 H N N 47 006 HO20 H N N 48 006 H21 H N N 49 006 H21A H N N 50 006 H23 H N N 51 006 H24 H N N 52 006 H25 H N N 53 006 H26 H N N 54 006 H27 H N N 55 006 H28 H N N 56 006 HN30 H N N 57 006 HO30 H N N 58 006 H31 H N N 59 006 H33 H N N 60 006 H34 H N N 61 006 H35 H N N 62 006 H37 H N N 63 006 H38 H N N 64 006 H39 H N N 65 006 H39A H N N 66 006 H40 H N N 67 006 H41 H N N 68 006 H43 H N N 69 006 H43A H N N 70 006 H43B H N N 71 006 H44 H N N 72 006 H44A H N N 73 006 H44B H N N 74 006 H47 H N N 75 006 H49 H N N 76 006 H49A H N N 77 006 H50 H N N 78 006 H50A H N N 79 006 H52 H N N 80 006 H52A H N N 81 006 H52B H N N 82 006 H53 H N N 83 006 H53A H N N 84 006 H53B H N N 85 006 H54 H N N 86 ALA N N N N 87 ALA CA C N S 88 ALA C C N N 89 ALA O O N N 90 ALA CB C N N 91 ALA OXT O N N 92 ALA H H N N 93 ALA H2 H N N 94 ALA HA H N N 95 ALA HB1 H N N 96 ALA HB2 H N N 97 ALA HB3 H N N 98 ALA HXT H N N 99 ARG N N N N 100 ARG CA C N S 101 ARG C C N N 102 ARG O O N N 103 ARG CB C N N 104 ARG CG C N N 105 ARG CD C N N 106 ARG NE N N N 107 ARG CZ C N N 108 ARG NH1 N N N 109 ARG NH2 N N N 110 ARG OXT O N N 111 ARG H H N N 112 ARG H2 H N N 113 ARG HA H N N 114 ARG HB2 H N N 115 ARG HB3 H N N 116 ARG HG2 H N N 117 ARG HG3 H N N 118 ARG HD2 H N N 119 ARG HD3 H N N 120 ARG HE H N N 121 ARG HH11 H N N 122 ARG HH12 H N N 123 ARG HH21 H N N 124 ARG HH22 H N N 125 ARG HXT H N N 126 ASN N N N N 127 ASN CA C N S 128 ASN C C N N 129 ASN O O N N 130 ASN CB C N N 131 ASN CG C N N 132 ASN OD1 O N N 133 ASN ND2 N N N 134 ASN OXT O N N 135 ASN H H N N 136 ASN H2 H N N 137 ASN HA H N N 138 ASN HB2 H N N 139 ASN HB3 H N N 140 ASN HD21 H N N 141 ASN HD22 H N N 142 ASN HXT H N N 143 ASP N N N N 144 ASP CA C N S 145 ASP C C N N 146 ASP O O N N 147 ASP CB C N N 148 ASP CG C N N 149 ASP OD1 O N N 150 ASP OD2 O N N 151 ASP OXT O N N 152 ASP H H N N 153 ASP H2 H N N 154 ASP HA H N N 155 ASP HB2 H N N 156 ASP HB3 H N N 157 ASP HD2 H N N 158 ASP HXT H N N 159 CYS N N N N 160 CYS CA C N R 161 CYS C C N N 162 CYS O O N N 163 CYS CB C N N 164 CYS SG S N N 165 CYS OXT O N N 166 CYS H H N N 167 CYS H2 H N N 168 CYS HA H N N 169 CYS HB2 H N N 170 CYS HB3 H N N 171 CYS HG H N N 172 CYS HXT H N N 173 GLN N N N N 174 GLN CA C N S 175 GLN C C N N 176 GLN O O N N 177 GLN CB C N N 178 GLN CG C N N 179 GLN CD C N N 180 GLN OE1 O N N 181 GLN NE2 N N N 182 GLN OXT O N N 183 GLN H H N N 184 GLN H2 H N N 185 GLN HA H N N 186 GLN HB2 H N N 187 GLN HB3 H N N 188 GLN HG2 H N N 189 GLN HG3 H N N 190 GLN HE21 H N N 191 GLN HE22 H N N 192 GLN HXT H N N 193 GLU N N N N 194 GLU CA C N S 195 GLU C C N N 196 GLU O O N N 197 GLU CB C N N 198 GLU CG C N N 199 GLU CD C N N 200 GLU OE1 O N N 201 GLU OE2 O N N 202 GLU OXT O N N 203 GLU H H N N 204 GLU H2 H N N 205 GLU HA H N N 206 GLU HB2 H N N 207 GLU HB3 H N N 208 GLU HG2 H N N 209 GLU HG3 H N N 210 GLU HE2 H N N 211 GLU HXT H N N 212 GLY N N N N 213 GLY CA C N N 214 GLY C C N N 215 GLY O O N N 216 GLY OXT O N N 217 GLY H H N N 218 GLY H2 H N N 219 GLY HA2 H N N 220 GLY HA3 H N N 221 GLY HXT H N N 222 GOL C1 C N N 223 GOL O1 O N N 224 GOL C2 C N N 225 GOL O2 O N N 226 GOL C3 C N N 227 GOL O3 O N N 228 GOL H11 H N N 229 GOL H12 H N N 230 GOL HO1 H N N 231 GOL H2 H N N 232 GOL HO2 H N N 233 GOL H31 H N N 234 GOL H32 H N N 235 GOL HO3 H N N 236 HIS N N N N 237 HIS CA C N S 238 HIS C C N N 239 HIS O O N N 240 HIS CB C N N 241 HIS CG C Y N 242 HIS ND1 N Y N 243 HIS CD2 C Y N 244 HIS CE1 C Y N 245 HIS NE2 N Y N 246 HIS OXT O N N 247 HIS H H N N 248 HIS H2 H N N 249 HIS HA H N N 250 HIS HB2 H N N 251 HIS HB3 H N N 252 HIS HD1 H N N 253 HIS HD2 H N N 254 HIS HE1 H N N 255 HIS HE2 H N N 256 HIS HXT H N N 257 HOH O O N N 258 HOH H1 H N N 259 HOH H2 H N N 260 ILE N N N N 261 ILE CA C N S 262 ILE C C N N 263 ILE O O N N 264 ILE CB C N S 265 ILE CG1 C N N 266 ILE CG2 C N N 267 ILE CD1 C N N 268 ILE OXT O N N 269 ILE H H N N 270 ILE H2 H N N 271 ILE HA H N N 272 ILE HB H N N 273 ILE HG12 H N N 274 ILE HG13 H N N 275 ILE HG21 H N N 276 ILE HG22 H N N 277 ILE HG23 H N N 278 ILE HD11 H N N 279 ILE HD12 H N N 280 ILE HD13 H N N 281 ILE HXT H N N 282 LEU N N N N 283 LEU CA C N S 284 LEU C C N N 285 LEU O O N N 286 LEU CB C N N 287 LEU CG C N N 288 LEU CD1 C N N 289 LEU CD2 C N N 290 LEU OXT O N N 291 LEU H H N N 292 LEU H2 H N N 293 LEU HA H N N 294 LEU HB2 H N N 295 LEU HB3 H N N 296 LEU HG H N N 297 LEU HD11 H N N 298 LEU HD12 H N N 299 LEU HD13 H N N 300 LEU HD21 H N N 301 LEU HD22 H N N 302 LEU HD23 H N N 303 LEU HXT H N N 304 LYS N N N N 305 LYS CA C N S 306 LYS C C N N 307 LYS O O N N 308 LYS CB C N N 309 LYS CG C N N 310 LYS CD C N N 311 LYS CE C N N 312 LYS NZ N N N 313 LYS OXT O N N 314 LYS H H N N 315 LYS H2 H N N 316 LYS HA H N N 317 LYS HB2 H N N 318 LYS HB3 H N N 319 LYS HG2 H N N 320 LYS HG3 H N N 321 LYS HD2 H N N 322 LYS HD3 H N N 323 LYS HE2 H N N 324 LYS HE3 H N N 325 LYS HZ1 H N N 326 LYS HZ2 H N N 327 LYS HZ3 H N N 328 LYS HXT H N N 329 MET N N N N 330 MET CA C N S 331 MET C C N N 332 MET O O N N 333 MET CB C N N 334 MET CG C N N 335 MET SD S N N 336 MET CE C N N 337 MET OXT O N N 338 MET H H N N 339 MET H2 H N N 340 MET HA H N N 341 MET HB2 H N N 342 MET HB3 H N N 343 MET HG2 H N N 344 MET HG3 H N N 345 MET HE1 H N N 346 MET HE2 H N N 347 MET HE3 H N N 348 MET HXT H N N 349 PHE N N N N 350 PHE CA C N S 351 PHE C C N N 352 PHE O O N N 353 PHE CB C N N 354 PHE CG C Y N 355 PHE CD1 C Y N 356 PHE CD2 C Y N 357 PHE CE1 C Y N 358 PHE CE2 C Y N 359 PHE CZ C Y N 360 PHE OXT O N N 361 PHE H H N N 362 PHE H2 H N N 363 PHE HA H N N 364 PHE HB2 H N N 365 PHE HB3 H N N 366 PHE HD1 H N N 367 PHE HD2 H N N 368 PHE HE1 H N N 369 PHE HE2 H N N 370 PHE HZ H N N 371 PHE HXT H N N 372 PRO N N N N 373 PRO CA C N S 374 PRO C C N N 375 PRO O O N N 376 PRO CB C N N 377 PRO CG C N N 378 PRO CD C N N 379 PRO OXT O N N 380 PRO H H N N 381 PRO HA H N N 382 PRO HB2 H N N 383 PRO HB3 H N N 384 PRO HG2 H N N 385 PRO HG3 H N N 386 PRO HD2 H N N 387 PRO HD3 H N N 388 PRO HXT H N N 389 SER N N N N 390 SER CA C N S 391 SER C C N N 392 SER O O N N 393 SER CB C N N 394 SER OG O N N 395 SER OXT O N N 396 SER H H N N 397 SER H2 H N N 398 SER HA H N N 399 SER HB2 H N N 400 SER HB3 H N N 401 SER HG H N N 402 SER HXT H N N 403 THR N N N N 404 THR CA C N S 405 THR C C N N 406 THR O O N N 407 THR CB C N R 408 THR OG1 O N N 409 THR CG2 C N N 410 THR OXT O N N 411 THR H H N N 412 THR H2 H N N 413 THR HA H N N 414 THR HB H N N 415 THR HG1 H N N 416 THR HG21 H N N 417 THR HG22 H N N 418 THR HG23 H N N 419 THR HXT H N N 420 TRP N N N N 421 TRP CA C N S 422 TRP C C N N 423 TRP O O N N 424 TRP CB C N N 425 TRP CG C Y N 426 TRP CD1 C Y N 427 TRP CD2 C Y N 428 TRP NE1 N Y N 429 TRP CE2 C Y N 430 TRP CE3 C Y N 431 TRP CZ2 C Y N 432 TRP CZ3 C Y N 433 TRP CH2 C Y N 434 TRP OXT O N N 435 TRP H H N N 436 TRP H2 H N N 437 TRP HA H N N 438 TRP HB2 H N N 439 TRP HB3 H N N 440 TRP HD1 H N N 441 TRP HE1 H N N 442 TRP HE3 H N N 443 TRP HZ2 H N N 444 TRP HZ3 H N N 445 TRP HH2 H N N 446 TRP HXT H N N 447 TYR N N N N 448 TYR CA C N S 449 TYR C C N N 450 TYR O O N N 451 TYR CB C N N 452 TYR CG C Y N 453 TYR CD1 C Y N 454 TYR CD2 C Y N 455 TYR CE1 C Y N 456 TYR CE2 C Y N 457 TYR CZ C Y N 458 TYR OH O N N 459 TYR OXT O N N 460 TYR H H N N 461 TYR H2 H N N 462 TYR HA H N N 463 TYR HB2 H N N 464 TYR HB3 H N N 465 TYR HD1 H N N 466 TYR HD2 H N N 467 TYR HE1 H N N 468 TYR HE2 H N N 469 TYR HH H N N 470 TYR HXT H N N 471 VAL N N N N 472 VAL CA C N S 473 VAL C C N N 474 VAL O O N N 475 VAL CB C N N 476 VAL CG1 C N N 477 VAL CG2 C N N 478 VAL OXT O N N 479 VAL H H N N 480 VAL H2 H N N 481 VAL HA H N N 482 VAL HB H N N 483 VAL HG11 H N N 484 VAL HG12 H N N 485 VAL HG13 H N N 486 VAL HG21 H N N 487 VAL HG22 H N N 488 VAL HG23 H N N 489 VAL HXT H N N 490 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 006 N2 C48 sing N N 1 006 N2 C20 sing N N 2 006 N2 HN2 sing N N 3 006 C21 C20 sing N N 4 006 C20 C28 sing N N 5 006 C20 H20 sing N N 6 006 C28 O20 sing N N 7 006 O20 HO20 sing N N 8 006 C22 C21 sing N N 9 006 C21 H21 sing N N 10 006 C21 H21A sing N N 11 006 C29 O21 doub N N 12 006 C27 C22 doub Y N 13 006 C22 C23 sing Y N 14 006 C24 C23 doub Y N 15 006 C23 H23 sing N N 16 006 C25 C24 sing Y N 17 006 C24 H24 sing N N 18 006 C26 C25 doub Y N 19 006 C25 H25 sing N N 20 006 C26 C27 sing Y N 21 006 C26 H26 sing N N 22 006 C27 H27 sing N N 23 006 C29 C28 sing N N 24 006 C28 H28 sing N N 25 006 N50 C29 sing N N 26 006 N30 C31 sing N N 27 006 N30 C55 sing N N 28 006 N30 HN30 sing N N 29 006 C35 O30 sing N N 30 006 O30 HO30 sing N N 31 006 C32 C31 sing N N 32 006 C31 C35 sing N N 33 006 C31 H31 sing N N 34 006 C33 C32 doub Y N 35 006 C32 C36 sing Y N 36 006 C34 C33 sing Y N 37 006 C33 H33 sing N N 38 006 C34 C38 doub Y N 39 006 C34 H34 sing N N 40 006 C39 C35 sing N N 41 006 C35 H35 sing N N 42 006 C37 C36 doub Y N 43 006 C36 C39 sing N N 44 006 C38 C37 sing Y N 45 006 C37 H37 sing N N 46 006 C38 H38 sing N N 47 006 C39 H39 sing N N 48 006 C39 H39A sing N N 49 006 C40 C47 doub Y N 50 006 C40 C41 sing Y N 51 006 C40 H40 sing N N 52 006 C48 O40 doub N N 53 006 C41 C42 doub Y N 54 006 C41 H41 sing N N 55 006 C45 O41 sing N N 56 006 O41 C49 sing N N 57 006 C42 C45 sing Y N 58 006 C42 C43 sing N N 59 006 C43 H43 sing N N 60 006 C43 H43A sing N N 61 006 C43 H43B sing N N 62 006 C46 C44 sing N N 63 006 C44 H44 sing N N 64 006 C44 H44A sing N N 65 006 C44 H44B sing N N 66 006 C46 C45 doub Y N 67 006 C47 C46 sing Y N 68 006 C47 H47 sing N N 69 006 C49 C48 sing N N 70 006 C49 H49 sing N N 71 006 C49 H49A sing N N 72 006 S50 C50 sing N N 73 006 C50 N50 sing N N 74 006 C50 H50 sing N N 75 006 C50 H50A sing N N 76 006 C54 N50 sing N N 77 006 O50 C55 doub N N 78 006 C51 S50 sing N N 79 006 C53 C51 sing N N 80 006 C51 C54 sing N N 81 006 C51 C52 sing N N 82 006 C52 H52 sing N N 83 006 C52 H52A sing N N 84 006 C52 H52B sing N N 85 006 C53 H53 sing N N 86 006 C53 H53A sing N N 87 006 C53 H53B sing N N 88 006 C55 C54 sing N N 89 006 C54 H54 sing N N 90 ALA N CA sing N N 91 ALA N H sing N N 92 ALA N H2 sing N N 93 ALA CA C sing N N 94 ALA CA CB sing N N 95 ALA CA HA sing N N 96 ALA C O doub N N 97 ALA C OXT sing N N 98 ALA CB HB1 sing N N 99 ALA CB HB2 sing N N 100 ALA CB HB3 sing N N 101 ALA OXT HXT sing N N 102 ARG N CA sing N N 103 ARG N H sing N N 104 ARG N H2 sing N N 105 ARG CA C sing N N 106 ARG CA CB sing N N 107 ARG CA HA sing N N 108 ARG C O doub N N 109 ARG C OXT sing N N 110 ARG CB CG sing N N 111 ARG CB HB2 sing N N 112 ARG CB HB3 sing N N 113 ARG CG CD sing N N 114 ARG CG HG2 sing N N 115 ARG CG HG3 sing N N 116 ARG CD NE sing N N 117 ARG CD HD2 sing N N 118 ARG CD HD3 sing N N 119 ARG NE CZ sing N N 120 ARG NE HE sing N N 121 ARG CZ NH1 sing N N 122 ARG CZ NH2 doub N N 123 ARG NH1 HH11 sing N N 124 ARG NH1 HH12 sing N N 125 ARG NH2 HH21 sing N N 126 ARG NH2 HH22 sing N N 127 ARG OXT HXT sing N N 128 ASN N CA sing N N 129 ASN N H sing N N 130 ASN N H2 sing N N 131 ASN CA C sing N N 132 ASN CA CB sing N N 133 ASN CA HA sing N N 134 ASN C O doub N N 135 ASN C OXT sing N N 136 ASN CB CG sing N N 137 ASN CB HB2 sing N N 138 ASN CB HB3 sing N N 139 ASN CG OD1 doub N N 140 ASN CG ND2 sing N N 141 ASN ND2 HD21 sing N N 142 ASN ND2 HD22 sing N N 143 ASN OXT HXT sing N N 144 ASP N CA sing N N 145 ASP N H sing N N 146 ASP N H2 sing N N 147 ASP CA C sing N N 148 ASP CA CB sing N N 149 ASP CA HA sing N N 150 ASP C O doub N N 151 ASP C OXT sing N N 152 ASP CB CG sing N N 153 ASP CB HB2 sing N N 154 ASP CB HB3 sing N N 155 ASP CG OD1 doub N N 156 ASP CG OD2 sing N N 157 ASP OD2 HD2 sing N N 158 ASP OXT HXT sing N N 159 CYS N CA sing N N 160 CYS N H sing N N 161 CYS N H2 sing N N 162 CYS CA C sing N N 163 CYS CA CB sing N N 164 CYS CA HA sing N N 165 CYS C O doub N N 166 CYS C OXT sing N N 167 CYS CB SG sing N N 168 CYS CB HB2 sing N N 169 CYS CB HB3 sing N N 170 CYS SG HG sing N N 171 CYS OXT HXT sing N N 172 GLN N CA sing N N 173 GLN N H sing N N 174 GLN N H2 sing N N 175 GLN CA C sing N N 176 GLN CA CB sing N N 177 GLN CA HA sing N N 178 GLN C O doub N N 179 GLN C OXT sing N N 180 GLN CB CG sing N N 181 GLN CB HB2 sing N N 182 GLN CB HB3 sing N N 183 GLN CG CD sing N N 184 GLN CG HG2 sing N N 185 GLN CG HG3 sing N N 186 GLN CD OE1 doub N N 187 GLN CD NE2 sing N N 188 GLN NE2 HE21 sing N N 189 GLN NE2 HE22 sing N N 190 GLN OXT HXT sing N N 191 GLU N CA sing N N 192 GLU N H sing N N 193 GLU N H2 sing N N 194 GLU CA C sing N N 195 GLU CA CB sing N N 196 GLU CA HA sing N N 197 GLU C O doub N N 198 GLU C OXT sing N N 199 GLU CB CG sing N N 200 GLU CB HB2 sing N N 201 GLU CB HB3 sing N N 202 GLU CG CD sing N N 203 GLU CG HG2 sing N N 204 GLU CG HG3 sing N N 205 GLU CD OE1 doub N N 206 GLU CD OE2 sing N N 207 GLU OE2 HE2 sing N N 208 GLU OXT HXT sing N N 209 GLY N CA sing N N 210 GLY N H sing N N 211 GLY N H2 sing N N 212 GLY CA C sing N N 213 GLY CA HA2 sing N N 214 GLY CA HA3 sing N N 215 GLY C O doub N N 216 GLY C OXT sing N N 217 GLY OXT HXT sing N N 218 GOL C1 O1 sing N N 219 GOL C1 C2 sing N N 220 GOL C1 H11 sing N N 221 GOL C1 H12 sing N N 222 GOL O1 HO1 sing N N 223 GOL C2 O2 sing N N 224 GOL C2 C3 sing N N 225 GOL C2 H2 sing N N 226 GOL O2 HO2 sing N N 227 GOL C3 O3 sing N N 228 GOL C3 H31 sing N N 229 GOL C3 H32 sing N N 230 GOL O3 HO3 sing N N 231 HIS N CA sing N N 232 HIS N H sing N N 233 HIS N H2 sing N N 234 HIS CA C sing N N 235 HIS CA CB sing N N 236 HIS CA HA sing N N 237 HIS C O doub N N 238 HIS C OXT sing N N 239 HIS CB CG sing N N 240 HIS CB HB2 sing N N 241 HIS CB HB3 sing N N 242 HIS CG ND1 sing Y N 243 HIS CG CD2 doub Y N 244 HIS ND1 CE1 doub Y N 245 HIS ND1 HD1 sing N N 246 HIS CD2 NE2 sing Y N 247 HIS CD2 HD2 sing N N 248 HIS CE1 NE2 sing Y N 249 HIS CE1 HE1 sing N N 250 HIS NE2 HE2 sing N N 251 HIS OXT HXT sing N N 252 HOH O H1 sing N N 253 HOH O H2 sing N N 254 ILE N CA sing N N 255 ILE N H sing N N 256 ILE N H2 sing N N 257 ILE CA C sing N N 258 ILE CA CB sing N N 259 ILE CA HA sing N N 260 ILE C O doub N N 261 ILE C OXT sing N N 262 ILE CB CG1 sing N N 263 ILE CB CG2 sing N N 264 ILE CB HB sing N N 265 ILE CG1 CD1 sing N N 266 ILE CG1 HG12 sing N N 267 ILE CG1 HG13 sing N N 268 ILE CG2 HG21 sing N N 269 ILE CG2 HG22 sing N N 270 ILE CG2 HG23 sing N N 271 ILE CD1 HD11 sing N N 272 ILE CD1 HD12 sing N N 273 ILE CD1 HD13 sing N N 274 ILE OXT HXT sing N N 275 LEU N CA sing N N 276 LEU N H sing N N 277 LEU N H2 sing N N 278 LEU CA C sing N N 279 LEU CA CB sing N N 280 LEU CA HA sing N N 281 LEU C O doub N N 282 LEU C OXT sing N N 283 LEU CB CG sing N N 284 LEU CB HB2 sing N N 285 LEU CB HB3 sing N N 286 LEU CG CD1 sing N N 287 LEU CG CD2 sing N N 288 LEU CG HG sing N N 289 LEU CD1 HD11 sing N N 290 LEU CD1 HD12 sing N N 291 LEU CD1 HD13 sing N N 292 LEU CD2 HD21 sing N N 293 LEU CD2 HD22 sing N N 294 LEU CD2 HD23 sing N N 295 LEU OXT HXT sing N N 296 LYS N CA sing N N 297 LYS N H sing N N 298 LYS N H2 sing N N 299 LYS CA C sing N N 300 LYS CA CB sing N N 301 LYS CA HA sing N N 302 LYS C O doub N N 303 LYS C OXT sing N N 304 LYS CB CG sing N N 305 LYS CB HB2 sing N N 306 LYS CB HB3 sing N N 307 LYS CG CD sing N N 308 LYS CG HG2 sing N N 309 LYS CG HG3 sing N N 310 LYS CD CE sing N N 311 LYS CD HD2 sing N N 312 LYS CD HD3 sing N N 313 LYS CE NZ sing N N 314 LYS CE HE2 sing N N 315 LYS CE HE3 sing N N 316 LYS NZ HZ1 sing N N 317 LYS NZ HZ2 sing N N 318 LYS NZ HZ3 sing N N 319 LYS OXT HXT sing N N 320 MET N CA sing N N 321 MET N H sing N N 322 MET N H2 sing N N 323 MET CA C sing N N 324 MET CA CB sing N N 325 MET CA HA sing N N 326 MET C O doub N N 327 MET C OXT sing N N 328 MET CB CG sing N N 329 MET CB HB2 sing N N 330 MET CB HB3 sing N N 331 MET CG SD sing N N 332 MET CG HG2 sing N N 333 MET CG HG3 sing N N 334 MET SD CE sing N N 335 MET CE HE1 sing N N 336 MET CE HE2 sing N N 337 MET CE HE3 sing N N 338 MET OXT HXT sing N N 339 PHE N CA sing N N 340 PHE N H sing N N 341 PHE N H2 sing N N 342 PHE CA C sing N N 343 PHE CA CB sing N N 344 PHE CA HA sing N N 345 PHE C O doub N N 346 PHE C OXT sing N N 347 PHE CB CG sing N N 348 PHE CB HB2 sing N N 349 PHE CB HB3 sing N N 350 PHE CG CD1 doub Y N 351 PHE CG CD2 sing Y N 352 PHE CD1 CE1 sing Y N 353 PHE CD1 HD1 sing N N 354 PHE CD2 CE2 doub Y N 355 PHE CD2 HD2 sing N N 356 PHE CE1 CZ doub Y N 357 PHE CE1 HE1 sing N N 358 PHE CE2 CZ sing Y N 359 PHE CE2 HE2 sing N N 360 PHE CZ HZ sing N N 361 PHE OXT HXT sing N N 362 PRO N CA sing N N 363 PRO N CD sing N N 364 PRO N H sing N N 365 PRO CA C sing N N 366 PRO CA CB sing N N 367 PRO CA HA sing N N 368 PRO C O doub N N 369 PRO C OXT sing N N 370 PRO CB CG sing N N 371 PRO CB HB2 sing N N 372 PRO CB HB3 sing N N 373 PRO CG CD sing N N 374 PRO CG HG2 sing N N 375 PRO CG HG3 sing N N 376 PRO CD HD2 sing N N 377 PRO CD HD3 sing N N 378 PRO OXT HXT sing N N 379 SER N CA sing N N 380 SER N H sing N N 381 SER N H2 sing N N 382 SER CA C sing N N 383 SER CA CB sing N N 384 SER CA HA sing N N 385 SER C O doub N N 386 SER C OXT sing N N 387 SER CB OG sing N N 388 SER CB HB2 sing N N 389 SER CB HB3 sing N N 390 SER OG HG sing N N 391 SER OXT HXT sing N N 392 THR N CA sing N N 393 THR N H sing N N 394 THR N H2 sing N N 395 THR CA C sing N N 396 THR CA CB sing N N 397 THR CA HA sing N N 398 THR C O doub N N 399 THR C OXT sing N N 400 THR CB OG1 sing N N 401 THR CB CG2 sing N N 402 THR CB HB sing N N 403 THR OG1 HG1 sing N N 404 THR CG2 HG21 sing N N 405 THR CG2 HG22 sing N N 406 THR CG2 HG23 sing N N 407 THR OXT HXT sing N N 408 TRP N CA sing N N 409 TRP N H sing N N 410 TRP N H2 sing N N 411 TRP CA C sing N N 412 TRP CA CB sing N N 413 TRP CA HA sing N N 414 TRP C O doub N N 415 TRP C OXT sing N N 416 TRP CB CG sing N N 417 TRP CB HB2 sing N N 418 TRP CB HB3 sing N N 419 TRP CG CD1 doub Y N 420 TRP CG CD2 sing Y N 421 TRP CD1 NE1 sing Y N 422 TRP CD1 HD1 sing N N 423 TRP CD2 CE2 doub Y N 424 TRP CD2 CE3 sing Y N 425 TRP NE1 CE2 sing Y N 426 TRP NE1 HE1 sing N N 427 TRP CE2 CZ2 sing Y N 428 TRP CE3 CZ3 doub Y N 429 TRP CE3 HE3 sing N N 430 TRP CZ2 CH2 doub Y N 431 TRP CZ2 HZ2 sing N N 432 TRP CZ3 CH2 sing Y N 433 TRP CZ3 HZ3 sing N N 434 TRP CH2 HH2 sing N N 435 TRP OXT HXT sing N N 436 TYR N CA sing N N 437 TYR N H sing N N 438 TYR N H2 sing N N 439 TYR CA C sing N N 440 TYR CA CB sing N N 441 TYR CA HA sing N N 442 TYR C O doub N N 443 TYR C OXT sing N N 444 TYR CB CG sing N N 445 TYR CB HB2 sing N N 446 TYR CB HB3 sing N N 447 TYR CG CD1 doub Y N 448 TYR CG CD2 sing Y N 449 TYR CD1 CE1 sing Y N 450 TYR CD1 HD1 sing N N 451 TYR CD2 CE2 doub Y N 452 TYR CD2 HD2 sing N N 453 TYR CE1 CZ doub Y N 454 TYR CE1 HE1 sing N N 455 TYR CE2 CZ sing Y N 456 TYR CE2 HE2 sing N N 457 TYR CZ OH sing N N 458 TYR OH HH sing N N 459 TYR OXT HXT sing N N 460 VAL N CA sing N N 461 VAL N H sing N N 462 VAL N H2 sing N N 463 VAL CA C sing N N 464 VAL CA CB sing N N 465 VAL CA HA sing N N 466 VAL C O doub N N 467 VAL C OXT sing N N 468 VAL CB CG1 sing N N 469 VAL CB CG2 sing N N 470 VAL CB HB sing N N 471 VAL CG1 HG11 sing N N 472 VAL CG1 HG12 sing N N 473 VAL CG1 HG13 sing N N 474 VAL CG2 HG21 sing N N 475 VAL CG2 HG22 sing N N 476 VAL CG2 HG23 sing N N 477 VAL OXT HXT sing N N 478 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 ;(4R)-3-[(2S,3S)-3-{[(2,6-dimethylphenoxy)acetyl]amino}-2-hydroxy-4-phenylbutanoyl]-N-[(1S,2R)-2-hydroxy-2,3-dihydro-1H-inden-1-yl]-5,5-dimethyl-1,3-thiazolidine-4-carboxamide ; 006 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1MSM _pdbx_initial_refinement_model.details 'PDB ENTRY 1MSM' #