HEADER UNKNOWN FUNCTION 23-OCT-09 3KE2 TITLE CRYSTAL STRUCTURE OF A DUF2131 FAMILY PROTEIN (SAMA_2911) FROM TITLE 2 SHEWANELLA AMAZONENSIS SB2B AT 2.50 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN YP_928783.1; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA AMAZONENSIS SB2B; SOURCE 3 ORGANISM_TAXID: 326297; SOURCE 4 STRAIN: ATCC BAA-1098 / SB2B; SOURCE 5 GENE: SAMA_2911; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 01-FEB-23 3KE2 1 REMARK SEQADV REVDAT 5 17-JUL-19 3KE2 1 REMARK LINK REVDAT 4 25-OCT-17 3KE2 1 REMARK REVDAT 3 13-JUL-11 3KE2 1 VERSN REVDAT 2 28-JUL-10 3KE2 1 HEADER TITLE KEYWDS REVDAT 1 03-NOV-09 3KE2 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF STRUCTURAL GENOMICS, UNKNOWN FUNCTION JRNL TITL 2 (YP_928783.1) FROM SHEWANELLA AMAZONENSIS SB2B AT 2.50 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0053 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 13554 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 667 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 914 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.38 REMARK 3 BIN R VALUE (WORKING SET) : 0.3300 REMARK 3 BIN FREE R VALUE SET COUNT : 53 REMARK 3 BIN FREE R VALUE : 0.4780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2318 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 60 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 51.64 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.55000 REMARK 3 B22 (A**2) : -1.24000 REMARK 3 B33 (A**2) : 0.69000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.484 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.281 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.227 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 23.302 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.908 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2439 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1664 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3296 ; 1.479 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4019 ; 0.851 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 309 ; 2.305 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 117 ;28.173 ;22.564 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 419 ;10.603 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;13.763 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 358 ; 0.052 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2746 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 532 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1493 ; 0.462 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 614 ; 0.097 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2368 ; 0.901 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 946 ; 1.546 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 920 ; 2.412 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 3 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 10 A 67 4 REMARK 3 1 B 10 B 67 4 REMARK 3 1 C 10 C 67 4 REMARK 3 2 A 68 A 74 6 REMARK 3 2 B 68 B 74 6 REMARK 3 2 C 68 C 74 6 REMARK 3 3 A 75 A 103 4 REMARK 3 3 B 75 B 103 4 REMARK 3 3 C 75 C 103 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1076 ; 0.330 ; 0.500 REMARK 3 MEDIUM POSITIONAL 1 B (A): 1076 ; 0.390 ; 0.500 REMARK 3 MEDIUM POSITIONAL 1 C (A): 1076 ; 0.430 ; 0.500 REMARK 3 LOOSE POSITIONAL 1 A (A): 93 ; 0.770 ; 5.000 REMARK 3 LOOSE POSITIONAL 1 B (A): 93 ; 1.210 ; 5.000 REMARK 3 LOOSE POSITIONAL 1 C (A): 93 ; 1.500 ; 5.000 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1076 ; 0.490 ; 2.000 REMARK 3 MEDIUM THERMAL 1 B (A**2): 1076 ; 0.450 ; 2.000 REMARK 3 MEDIUM THERMAL 1 C (A**2): 1076 ; 0.530 ; 2.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 93 ; 0.930 ;10.000 REMARK 3 LOOSE THERMAL 1 B (A**2): 93 ; 0.960 ;10.000 REMARK 3 LOOSE THERMAL 1 C (A**2): 93 ; 1.070 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 110 REMARK 3 ORIGIN FOR THE GROUP (A): 20.9920 41.2860 43.4280 REMARK 3 T TENSOR REMARK 3 T11: 0.1484 T22: 0.0109 REMARK 3 T33: 0.2189 T12: 0.0180 REMARK 3 T13: -0.0322 T23: 0.0153 REMARK 3 L TENSOR REMARK 3 L11: 2.0737 L22: 4.8338 REMARK 3 L33: 2.7528 L12: -1.6778 REMARK 3 L13: -0.6435 L23: 1.5548 REMARK 3 S TENSOR REMARK 3 S11: 0.0998 S12: 0.0267 S13: -0.1752 REMARK 3 S21: -0.2906 S22: -0.0022 S23: 0.0343 REMARK 3 S31: 0.0463 S32: -0.0406 S33: -0.0976 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 11 B 106 REMARK 3 ORIGIN FOR THE GROUP (A): 36.3840 18.8860 48.7100 REMARK 3 T TENSOR REMARK 3 T11: 0.1625 T22: 0.1920 REMARK 3 T33: 0.2877 T12: 0.0887 REMARK 3 T13: -0.0568 T23: -0.0091 REMARK 3 L TENSOR REMARK 3 L11: 1.6875 L22: 4.7218 REMARK 3 L33: 2.3992 L12: -2.2089 REMARK 3 L13: -0.7442 L23: 0.6169 REMARK 3 S TENSOR REMARK 3 S11: -0.2637 S12: -0.4150 S13: 0.0606 REMARK 3 S21: 0.5609 S22: 0.3440 S23: 0.0268 REMARK 3 S31: 0.0216 S32: -0.0817 S33: -0.0803 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 11 C 107 REMARK 3 ORIGIN FOR THE GROUP (A): 12.6690 11.6510 33.3480 REMARK 3 T TENSOR REMARK 3 T11: 0.0585 T22: 0.1061 REMARK 3 T33: 0.1854 T12: -0.0288 REMARK 3 T13: -0.0264 T23: -0.0144 REMARK 3 L TENSOR REMARK 3 L11: 6.6280 L22: 1.3831 REMARK 3 L33: 2.2025 L12: 0.4843 REMARK 3 L13: -0.4932 L23: -0.1126 REMARK 3 S TENSOR REMARK 3 S11: 0.0070 S12: -0.6465 S13: 0.0131 REMARK 3 S21: 0.1393 S22: -0.0050 S23: 0.0283 REMARK 3 S31: 0.0511 S32: -0.0971 S33: -0.0019 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS REMARK 3 ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE REMARK 3 ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED REMARK 3 SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. TLS REMARK 3 GROUPS WERE ASSIGNED WITH THE AID OF TLS MOTION SERVER. 5. REMARK 3 NITRATE IONS (NO3)FROM THE CRYSTALLIZATION SOLUTION; AND REMARK 3 ETHYLENE GLYCOLS (EDO)USED AS A CRYOPROTECTANT ARE MODELED INTO REMARK 3 THE STRUCTURE. REMARK 4 REMARK 4 3KE2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000055875. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91162,0.97917 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13572 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 29.921 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.42300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2000M K2NO3, 20.0000% PEG-3350, NO REMARK 280 BUFFER PH 6.9, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.29150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.29150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 33.23950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.25450 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 33.23950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.25450 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 57.29150 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 33.23950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.25450 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 57.29150 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 33.23950 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.25450 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING ANALYSIS AND STATIC LIGHT SCATTERING WITH REMARK 300 ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY SUPPORTS THE ASSIGNMENT OF REMARK 300 A DIMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 57.29150 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 127 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 THR A 2 REMARK 465 GLN A 3 REMARK 465 ASP A 4 REMARK 465 ASN A 5 REMARK 465 ALA A 6 REMARK 465 SER A 7 REMARK 465 THR A 111 REMARK 465 ALA A 112 REMARK 465 GLY A 113 REMARK 465 ASN A 114 REMARK 465 GLY A 115 REMARK 465 ALA A 116 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 THR B 2 REMARK 465 GLN B 3 REMARK 465 ASP B 4 REMARK 465 ASN B 5 REMARK 465 ALA B 6 REMARK 465 SER B 7 REMARK 465 GLY B 8 REMARK 465 ASP B 9 REMARK 465 GLN B 10 REMARK 465 VAL B 107 REMARK 465 GLY B 108 REMARK 465 GLN B 109 REMARK 465 ALA B 110 REMARK 465 THR B 111 REMARK 465 ALA B 112 REMARK 465 GLY B 113 REMARK 465 ASN B 114 REMARK 465 GLY B 115 REMARK 465 ALA B 116 REMARK 465 GLY C 0 REMARK 465 MSE C 1 REMARK 465 THR C 2 REMARK 465 GLN C 3 REMARK 465 ASP C 4 REMARK 465 ASN C 5 REMARK 465 ALA C 6 REMARK 465 SER C 7 REMARK 465 GLY C 8 REMARK 465 ASP C 9 REMARK 465 GLN C 10 REMARK 465 GLY C 108 REMARK 465 GLN C 109 REMARK 465 ALA C 110 REMARK 465 THR C 111 REMARK 465 ALA C 112 REMARK 465 GLY C 113 REMARK 465 ASN C 114 REMARK 465 GLY C 115 REMARK 465 ALA C 116 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 10 CD OE1 NE2 REMARK 470 ARG A 47 CD NE CZ NH1 NH2 REMARK 470 GLN A 109 CG CD OE1 NE2 REMARK 470 VAL B 11 CG1 CG2 REMARK 470 LYS B 13 CD CE NZ REMARK 470 LYS B 16 CE NZ REMARK 470 LEU B 100 CG CD1 CD2 REMARK 470 VAL C 11 CG1 CG2 REMARK 470 LYS C 16 CD CE NZ REMARK 470 ASP C 105 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 10 -73.72 -35.56 REMARK 500 ASP B 104 -161.15 -103.49 REMARK 500 ASP B 105 146.42 -174.83 REMARK 500 ASP C 105 54.70 -95.26 REMARK 500 ALA C 106 30.40 -84.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 117 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 B 117 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 C 117 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 118 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 119 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 400661 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DNA SEQUENCING REMARK 999 OF THE CLONED CONSTRUCT SHOWS A VALINE AT POSITION 107 INSTEAD OF REMARK 999 AN ASPARTATE. THE VALINE AT POSITION 107 IS SUPPORTED BY THE REMARK 999 ELECTRON DENSITY DBREF 3KE2 A 1 116 UNP A1S9Q7 A1S9Q7_SHEAM 1 116 DBREF 3KE2 B 1 116 UNP A1S9Q7 A1S9Q7_SHEAM 1 116 DBREF 3KE2 C 1 116 UNP A1S9Q7 A1S9Q7_SHEAM 1 116 SEQADV 3KE2 GLY A 0 UNP A1S9Q7 EXPRESSION TAG SEQADV 3KE2 VAL A 107 UNP A1S9Q7 ASP 107 SEE REMARK 999 SEQADV 3KE2 GLY B 0 UNP A1S9Q7 EXPRESSION TAG SEQADV 3KE2 VAL B 107 UNP A1S9Q7 ASP 107 SEE REMARK 999 SEQADV 3KE2 GLY C 0 UNP A1S9Q7 EXPRESSION TAG SEQADV 3KE2 VAL C 107 UNP A1S9Q7 ASP 107 SEE REMARK 999 SEQRES 1 A 117 GLY MSE THR GLN ASP ASN ALA SER GLY ASP GLN VAL SER SEQRES 2 A 117 LYS GLN HIS LYS ALA PHE LEU ARG LYS LEU TYR LEU ALA SEQRES 3 A 117 HIS LEU MSE ASP ASP ALA ARG HIS ASN LEU LEU SER LEU SEQRES 4 A 117 GLY LYS LEU THR GLY MSE PRO ARG ARG THR LEU GLN ASP SEQRES 5 A 117 ALA ILE ALA SER PHE ALA ASP ILE GLY ILE GLU VAL GLU SEQRES 6 A 117 PHE VAL GLN ASP GLY GLU ARG HIS ASN ALA GLY TYR TYR SEQRES 7 A 117 ARG ILE ARG THR TRP GLY PRO ILE SER SER ALA TRP MSE SEQRES 8 A 117 ASP THR HIS VAL ASP GLU VAL LYS SER LEU LEU GLY VAL SEQRES 9 A 117 ASP ASP ALA VAL GLY GLN ALA THR ALA GLY ASN GLY ALA SEQRES 1 B 117 GLY MSE THR GLN ASP ASN ALA SER GLY ASP GLN VAL SER SEQRES 2 B 117 LYS GLN HIS LYS ALA PHE LEU ARG LYS LEU TYR LEU ALA SEQRES 3 B 117 HIS LEU MSE ASP ASP ALA ARG HIS ASN LEU LEU SER LEU SEQRES 4 B 117 GLY LYS LEU THR GLY MSE PRO ARG ARG THR LEU GLN ASP SEQRES 5 B 117 ALA ILE ALA SER PHE ALA ASP ILE GLY ILE GLU VAL GLU SEQRES 6 B 117 PHE VAL GLN ASP GLY GLU ARG HIS ASN ALA GLY TYR TYR SEQRES 7 B 117 ARG ILE ARG THR TRP GLY PRO ILE SER SER ALA TRP MSE SEQRES 8 B 117 ASP THR HIS VAL ASP GLU VAL LYS SER LEU LEU GLY VAL SEQRES 9 B 117 ASP ASP ALA VAL GLY GLN ALA THR ALA GLY ASN GLY ALA SEQRES 1 C 117 GLY MSE THR GLN ASP ASN ALA SER GLY ASP GLN VAL SER SEQRES 2 C 117 LYS GLN HIS LYS ALA PHE LEU ARG LYS LEU TYR LEU ALA SEQRES 3 C 117 HIS LEU MSE ASP ASP ALA ARG HIS ASN LEU LEU SER LEU SEQRES 4 C 117 GLY LYS LEU THR GLY MSE PRO ARG ARG THR LEU GLN ASP SEQRES 5 C 117 ALA ILE ALA SER PHE ALA ASP ILE GLY ILE GLU VAL GLU SEQRES 6 C 117 PHE VAL GLN ASP GLY GLU ARG HIS ASN ALA GLY TYR TYR SEQRES 7 C 117 ARG ILE ARG THR TRP GLY PRO ILE SER SER ALA TRP MSE SEQRES 8 C 117 ASP THR HIS VAL ASP GLU VAL LYS SER LEU LEU GLY VAL SEQRES 9 C 117 ASP ASP ALA VAL GLY GLN ALA THR ALA GLY ASN GLY ALA MODRES 3KE2 MSE A 28 MET SELENOMETHIONINE MODRES 3KE2 MSE A 44 MET SELENOMETHIONINE MODRES 3KE2 MSE A 90 MET SELENOMETHIONINE MODRES 3KE2 MSE B 28 MET SELENOMETHIONINE MODRES 3KE2 MSE B 44 MET SELENOMETHIONINE MODRES 3KE2 MSE B 90 MET SELENOMETHIONINE MODRES 3KE2 MSE C 28 MET SELENOMETHIONINE MODRES 3KE2 MSE C 44 MET SELENOMETHIONINE MODRES 3KE2 MSE C 90 MET SELENOMETHIONINE HET MSE A 28 8 HET MSE A 44 13 HET MSE A 90 8 HET MSE B 28 8 HET MSE B 44 13 HET MSE B 90 8 HET MSE C 28 8 HET MSE C 44 13 HET MSE C 90 8 HET NO3 A 117 4 HET NO3 B 117 4 HET NO3 C 117 4 HET EDO C 118 4 HET EDO C 119 4 HETNAM MSE SELENOMETHIONINE HETNAM NO3 NITRATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 4 NO3 3(N O3 1-) FORMUL 7 EDO 2(C2 H6 O2) FORMUL 9 HOH *60(H2 O) HELIX 1 1 SER A 12 ALA A 31 1 20 HELIX 2 2 ASN A 34 GLY A 43 1 10 HELIX 3 3 PRO A 45 SER A 55 1 11 HELIX 4 4 PHE A 56 GLY A 60 5 5 HELIX 5 5 SER A 86 GLY A 102 1 17 HELIX 6 6 ASP A 105 ALA A 110 1 6 HELIX 7 7 SER B 12 ALA B 31 1 20 HELIX 8 8 ASN B 34 GLY B 43 1 10 HELIX 9 9 PRO B 45 SER B 55 1 11 HELIX 10 10 PHE B 56 GLY B 60 5 5 HELIX 11 11 SER B 86 GLY B 102 1 17 HELIX 12 12 SER C 12 ALA C 31 1 20 HELIX 13 13 ASN C 34 GLY C 43 1 10 HELIX 14 14 PRO C 45 SER C 55 1 11 HELIX 15 15 PHE C 56 GLY C 60 5 5 HELIX 16 16 SER C 86 GLY C 102 1 17 SHEET 1 A 2 GLU A 62 VAL A 66 0 SHEET 2 A 2 TYR A 76 THR A 81 -1 O ARG A 78 N GLU A 64 SHEET 1 B 2 GLU B 62 VAL B 66 0 SHEET 2 B 2 TYR B 76 THR B 81 -1 O TYR B 76 N VAL B 66 SHEET 1 C 2 GLU C 62 VAL C 66 0 SHEET 2 C 2 TYR C 76 THR C 81 -1 O ARG C 78 N GLU C 64 LINK C LEU A 27 N MSE A 28 1555 1555 1.33 LINK C MSE A 28 N ASP A 29 1555 1555 1.31 LINK C GLY A 43 N MSE A 44 1555 1555 1.34 LINK C MSE A 44 N PRO A 45 1555 1555 1.35 LINK C TRP A 89 N MSE A 90 1555 1555 1.32 LINK C MSE A 90 N ASP A 91 1555 1555 1.35 LINK C LEU B 27 N MSE B 28 1555 1555 1.32 LINK C MSE B 28 N ASP B 29 1555 1555 1.33 LINK C GLY B 43 N MSE B 44 1555 1555 1.34 LINK C MSE B 44 N PRO B 45 1555 1555 1.35 LINK C TRP B 89 N MSE B 90 1555 1555 1.33 LINK C MSE B 90 N ASP B 91 1555 1555 1.34 LINK C LEU C 27 N MSE C 28 1555 1555 1.33 LINK C MSE C 28 N ASP C 29 1555 1555 1.32 LINK C GLY C 43 N MSE C 44 1555 1555 1.34 LINK C MSE C 44 N PRO C 45 1555 1555 1.35 LINK C TRP C 89 N MSE C 90 1555 1555 1.33 LINK C MSE C 90 N ASP C 91 1555 1555 1.34 SITE 1 AC1 4 ASN A 34 LEU A 35 LEU A 36 ARG A 71 SITE 1 AC2 6 ASN B 34 LEU B 35 LEU B 36 ALA B 74 SITE 2 AC2 6 TYR B 77 HOH B 130 SITE 1 AC3 6 ARG B 71 ASN C 34 LEU C 35 LEU C 36 SITE 2 AC3 6 ARG C 46 EDO C 119 SITE 1 AC4 3 ASN C 34 HIS C 72 TYR C 76 SITE 1 AC5 5 HOH B 126 PHE C 65 GLN C 67 GLY C 75 SITE 2 AC5 5 NO3 C 117 CRYST1 66.479 100.509 114.583 90.00 90.00 90.00 C 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015042 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009949 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008727 0.00000