HEADER TRANSFERASE 23-OCT-09 3KE5 TITLE CRYSTAL STRUCTURE OF A PDUO-TYPE ATP:COB(I)ALAMIN ADENOSYLTRANSFERASE TITLE 2 FROM BACILLUS CEREUS IN A COMPLEX WITH ATP COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL CYTOSOLIC PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: ATP:COB(I)ALAMIN ADENOSYLTRANSFERASE, PUTATIVE; COMPND 5 EC: 2.5.1.17; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS CEREUS; SOURCE 3 ORGANISM_TAXID: 226900; SOURCE 4 STRAIN: ATCC 14579; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET 28A KEYWDS HELIX BUNDLE, MGATP COMPLEX, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.K.PARK,J.H.MOON,Y.M.CHI REVDAT 3 01-NOV-23 3KE5 1 REMARK SEQADV LINK REVDAT 2 01-NOV-17 3KE5 1 REMARK REVDAT 1 20-OCT-10 3KE5 0 JRNL AUTH A.K.PARK,J.H.MOON,Y.M.CHI JRNL TITL CRYSTAL STRUCTURE OF A PDUO-TYPE ATP:COB(I)ALAMIN JRNL TITL 2 ADENOSYLTRANSFERASE FROM BACILLUS CEREUS IN A COMPLEX WITH JRNL TITL 3 ATP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 91.1 REMARK 3 NUMBER OF REFLECTIONS : 43796 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 2195 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4269 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 96 REMARK 3 SOLVENT ATOMS : 340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04100 REMARK 3 B22 (A**2) : 4.89100 REMARK 3 B33 (A**2) : -4.85000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 56.30 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS_TOPPAR:PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CNS_TOPPAR:WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : CNS_TOPPAR:ION.PARAM REMARK 3 PARAMETER FILE 4 : ATP.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3KE5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-NOV-09. REMARK 100 THE DEPOSITION ID IS D_1000055878. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JAN-08 REMARK 200 TEMPERATURE (KELVIN) : 77.0 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 6C1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.23986 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43832 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.1 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 65.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.31200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 2AH6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES PH 6.5, 1.57M AMMONIUM REMARK 280 SULFATE, 9.7%(V/V) DIOXANE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.13150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 79.13150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 32.46250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 68.52100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 32.46250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 68.52100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 79.13150 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 32.46250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 68.52100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 79.13150 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 32.46250 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 68.52100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C 523 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ALA A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 VAL A 183 REMARK 465 PHE A 184 REMARK 465 ARG A 185 REMARK 465 ASP A 186 REMARK 465 LYS A 187 REMARK 465 LYS A 188 REMARK 465 GLU A 189 REMARK 465 LYS A 190 REMARK 465 GLU A 191 REMARK 465 VAL A 192 REMARK 465 GLU A 193 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ALA B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 SER B 180 REMARK 465 ALA B 181 REMARK 465 VAL B 182 REMARK 465 VAL B 183 REMARK 465 PHE B 184 REMARK 465 ARG B 185 REMARK 465 ASP B 186 REMARK 465 LYS B 187 REMARK 465 LYS B 188 REMARK 465 GLU B 189 REMARK 465 LYS B 190 REMARK 465 GLU B 191 REMARK 465 VAL B 192 REMARK 465 GLU B 193 REMARK 465 MET C -19 REMARK 465 GLY C -18 REMARK 465 SER C -17 REMARK 465 SER C -16 REMARK 465 HIS C -15 REMARK 465 HIS C -14 REMARK 465 HIS C -13 REMARK 465 HIS C -12 REMARK 465 HIS C -11 REMARK 465 HIS C -10 REMARK 465 SER C -9 REMARK 465 SER C -8 REMARK 465 GLY C -7 REMARK 465 LEU C -6 REMARK 465 VAL C -5 REMARK 465 PRO C -4 REMARK 465 ALA C -3 REMARK 465 GLY C -2 REMARK 465 SER C -1 REMARK 465 HIS C 0 REMARK 465 MET C 1 REMARK 465 LYS C 2 REMARK 465 VAL C 182 REMARK 465 VAL C 183 REMARK 465 PHE C 184 REMARK 465 ARG C 185 REMARK 465 ASP C 186 REMARK 465 LYS C 187 REMARK 465 LYS C 188 REMARK 465 GLU C 189 REMARK 465 LYS C 190 REMARK 465 GLU C 191 REMARK 465 VAL C 192 REMARK 465 GLU C 193 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 76 O HOH A 543 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 6 -4.89 73.52 REMARK 500 LYS B 2 90.40 71.61 REMARK 500 LYS B 6 -1.54 71.54 REMARK 500 ASN B 178 106.74 -166.92 REMARK 500 GLN C 78 91.16 -56.05 REMARK 500 ASN C 178 98.12 -160.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 204 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 153 OD1 REMARK 620 2 HOH A 510 O 76.4 REMARK 620 3 HOH A 511 O 119.0 104.6 REMARK 620 4 ATP B 201 O3G 111.8 153.0 93.9 REMARK 620 5 ATP B 201 O1B 81.3 78.6 159.7 77.4 REMARK 620 6 ATP B 201 O1A 149.1 81.1 86.9 80.3 73.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 206 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP A 203 O3G REMARK 620 2 ATP A 203 O1B 77.4 REMARK 620 3 ATP A 203 O1A 79.8 74.9 REMARK 620 4 ASN C 153 OD1 111.1 90.7 159.9 REMARK 620 5 HOH C 519 O 92.6 158.9 85.2 110.3 REMARK 620 6 HOH C 520 O 153.8 82.0 79.4 84.9 101.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 205 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 153 OD1 REMARK 620 2 HOH B 515 O 106.8 REMARK 620 3 HOH B 516 O 82.9 112.0 REMARK 620 4 ATP C 202 O3G 103.2 90.7 154.1 REMARK 620 5 ATP C 202 O1B 87.3 162.7 79.2 76.0 REMARK 620 6 ATP C 202 O1A 159.7 93.2 86.7 79.3 73.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 206 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3KE4 RELATED DB: PDB DBREF 3KE5 A 1 193 UNP Q813T7 Q813T7_BACCR 1 193 DBREF 3KE5 B 1 193 UNP Q813T7 Q813T7_BACCR 1 193 DBREF 3KE5 C 1 193 UNP Q813T7 Q813T7_BACCR 1 193 SEQADV 3KE5 MET A -19 UNP Q813T7 EXPRESSION TAG SEQADV 3KE5 GLY A -18 UNP Q813T7 EXPRESSION TAG SEQADV 3KE5 SER A -17 UNP Q813T7 EXPRESSION TAG SEQADV 3KE5 SER A -16 UNP Q813T7 EXPRESSION TAG SEQADV 3KE5 HIS A -15 UNP Q813T7 EXPRESSION TAG SEQADV 3KE5 HIS A -14 UNP Q813T7 EXPRESSION TAG SEQADV 3KE5 HIS A -13 UNP Q813T7 EXPRESSION TAG SEQADV 3KE5 HIS A -12 UNP Q813T7 EXPRESSION TAG SEQADV 3KE5 HIS A -11 UNP Q813T7 EXPRESSION TAG SEQADV 3KE5 HIS A -10 UNP Q813T7 EXPRESSION TAG SEQADV 3KE5 SER A -9 UNP Q813T7 EXPRESSION TAG SEQADV 3KE5 SER A -8 UNP Q813T7 EXPRESSION TAG SEQADV 3KE5 GLY A -7 UNP Q813T7 EXPRESSION TAG SEQADV 3KE5 LEU A -6 UNP Q813T7 EXPRESSION TAG SEQADV 3KE5 VAL A -5 UNP Q813T7 EXPRESSION TAG SEQADV 3KE5 PRO A -4 UNP Q813T7 EXPRESSION TAG SEQADV 3KE5 ALA A -3 UNP Q813T7 EXPRESSION TAG SEQADV 3KE5 GLY A -2 UNP Q813T7 EXPRESSION TAG SEQADV 3KE5 SER A -1 UNP Q813T7 EXPRESSION TAG SEQADV 3KE5 HIS A 0 UNP Q813T7 EXPRESSION TAG SEQADV 3KE5 MET B -19 UNP Q813T7 EXPRESSION TAG SEQADV 3KE5 GLY B -18 UNP Q813T7 EXPRESSION TAG SEQADV 3KE5 SER B -17 UNP Q813T7 EXPRESSION TAG SEQADV 3KE5 SER B -16 UNP Q813T7 EXPRESSION TAG SEQADV 3KE5 HIS B -15 UNP Q813T7 EXPRESSION TAG SEQADV 3KE5 HIS B -14 UNP Q813T7 EXPRESSION TAG SEQADV 3KE5 HIS B -13 UNP Q813T7 EXPRESSION TAG SEQADV 3KE5 HIS B -12 UNP Q813T7 EXPRESSION TAG SEQADV 3KE5 HIS B -11 UNP Q813T7 EXPRESSION TAG SEQADV 3KE5 HIS B -10 UNP Q813T7 EXPRESSION TAG SEQADV 3KE5 SER B -9 UNP Q813T7 EXPRESSION TAG SEQADV 3KE5 SER B -8 UNP Q813T7 EXPRESSION TAG SEQADV 3KE5 GLY B -7 UNP Q813T7 EXPRESSION TAG SEQADV 3KE5 LEU B -6 UNP Q813T7 EXPRESSION TAG SEQADV 3KE5 VAL B -5 UNP Q813T7 EXPRESSION TAG SEQADV 3KE5 PRO B -4 UNP Q813T7 EXPRESSION TAG SEQADV 3KE5 ALA B -3 UNP Q813T7 EXPRESSION TAG SEQADV 3KE5 GLY B -2 UNP Q813T7 EXPRESSION TAG SEQADV 3KE5 SER B -1 UNP Q813T7 EXPRESSION TAG SEQADV 3KE5 HIS B 0 UNP Q813T7 EXPRESSION TAG SEQADV 3KE5 MET C -19 UNP Q813T7 EXPRESSION TAG SEQADV 3KE5 GLY C -18 UNP Q813T7 EXPRESSION TAG SEQADV 3KE5 SER C -17 UNP Q813T7 EXPRESSION TAG SEQADV 3KE5 SER C -16 UNP Q813T7 EXPRESSION TAG SEQADV 3KE5 HIS C -15 UNP Q813T7 EXPRESSION TAG SEQADV 3KE5 HIS C -14 UNP Q813T7 EXPRESSION TAG SEQADV 3KE5 HIS C -13 UNP Q813T7 EXPRESSION TAG SEQADV 3KE5 HIS C -12 UNP Q813T7 EXPRESSION TAG SEQADV 3KE5 HIS C -11 UNP Q813T7 EXPRESSION TAG SEQADV 3KE5 HIS C -10 UNP Q813T7 EXPRESSION TAG SEQADV 3KE5 SER C -9 UNP Q813T7 EXPRESSION TAG SEQADV 3KE5 SER C -8 UNP Q813T7 EXPRESSION TAG SEQADV 3KE5 GLY C -7 UNP Q813T7 EXPRESSION TAG SEQADV 3KE5 LEU C -6 UNP Q813T7 EXPRESSION TAG SEQADV 3KE5 VAL C -5 UNP Q813T7 EXPRESSION TAG SEQADV 3KE5 PRO C -4 UNP Q813T7 EXPRESSION TAG SEQADV 3KE5 ALA C -3 UNP Q813T7 EXPRESSION TAG SEQADV 3KE5 GLY C -2 UNP Q813T7 EXPRESSION TAG SEQADV 3KE5 SER C -1 UNP Q813T7 EXPRESSION TAG SEQADV 3KE5 HIS C 0 UNP Q813T7 EXPRESSION TAG SEQRES 1 A 213 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 213 LEU VAL PRO ALA GLY SER HIS MET LYS LEU TYR THR LYS SEQRES 3 A 213 THR GLY ASP LYS GLY THR THR SER VAL ILE GLY GLY ARG SEQRES 4 A 213 VAL ASP LYS ASP ASP ILE ARG VAL GLU ALA TYR GLY THR SEQRES 5 A 213 ILE ASP GLU ALA ASN SER HIS ILE GLY TYR ALA MET THR SEQRES 6 A 213 LYS LEU GLN GLY GLY ALA PHE ILE ASP ILE TYR ASN GLU SEQRES 7 A 213 LEU GLU ASN ILE GLN HIS GLU LEU PHE ASP CYS GLY GLY SEQRES 8 A 213 ASP LEU ALA ILE VAL GLU GLN LYS ILE PRO TYR LYS VAL SEQRES 9 A 213 THR ILE VAL MET VAL GLU SER LEU GLU ARG LYS ILE ASP SEQRES 10 A 213 LEU TYR ILE GLU GLU ALA PRO PRO LEU GLU ARG PHE ILE SEQRES 11 A 213 LEU PRO GLY GLY SER GLU ALA ALA ALA THR ILE HIS ILE SEQRES 12 A 213 ALA ARG THR VAL VAL ARG ARG ALA GLU ARG SER ILE VAL SEQRES 13 A 213 SER LEU GLN LYS GLU VAL LYS ILE ASN GLU VAL VAL LEU SEQRES 14 A 213 LYS TYR VAL ASN ARG LEU SER ASP TYR LEU PHE ALA ILE SEQRES 15 A 213 ALA ARG VAL ILE ASN ALA ARG LEU GLN VAL LYS ASP VAL SEQRES 16 A 213 GLU TYR ASN ARG SER ALA VAL VAL PHE ARG ASP LYS LYS SEQRES 17 A 213 GLU LYS GLU VAL GLU SEQRES 1 B 213 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 213 LEU VAL PRO ALA GLY SER HIS MET LYS LEU TYR THR LYS SEQRES 3 B 213 THR GLY ASP LYS GLY THR THR SER VAL ILE GLY GLY ARG SEQRES 4 B 213 VAL ASP LYS ASP ASP ILE ARG VAL GLU ALA TYR GLY THR SEQRES 5 B 213 ILE ASP GLU ALA ASN SER HIS ILE GLY TYR ALA MET THR SEQRES 6 B 213 LYS LEU GLN GLY GLY ALA PHE ILE ASP ILE TYR ASN GLU SEQRES 7 B 213 LEU GLU ASN ILE GLN HIS GLU LEU PHE ASP CYS GLY GLY SEQRES 8 B 213 ASP LEU ALA ILE VAL GLU GLN LYS ILE PRO TYR LYS VAL SEQRES 9 B 213 THR ILE VAL MET VAL GLU SER LEU GLU ARG LYS ILE ASP SEQRES 10 B 213 LEU TYR ILE GLU GLU ALA PRO PRO LEU GLU ARG PHE ILE SEQRES 11 B 213 LEU PRO GLY GLY SER GLU ALA ALA ALA THR ILE HIS ILE SEQRES 12 B 213 ALA ARG THR VAL VAL ARG ARG ALA GLU ARG SER ILE VAL SEQRES 13 B 213 SER LEU GLN LYS GLU VAL LYS ILE ASN GLU VAL VAL LEU SEQRES 14 B 213 LYS TYR VAL ASN ARG LEU SER ASP TYR LEU PHE ALA ILE SEQRES 15 B 213 ALA ARG VAL ILE ASN ALA ARG LEU GLN VAL LYS ASP VAL SEQRES 16 B 213 GLU TYR ASN ARG SER ALA VAL VAL PHE ARG ASP LYS LYS SEQRES 17 B 213 GLU LYS GLU VAL GLU SEQRES 1 C 213 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 C 213 LEU VAL PRO ALA GLY SER HIS MET LYS LEU TYR THR LYS SEQRES 3 C 213 THR GLY ASP LYS GLY THR THR SER VAL ILE GLY GLY ARG SEQRES 4 C 213 VAL ASP LYS ASP ASP ILE ARG VAL GLU ALA TYR GLY THR SEQRES 5 C 213 ILE ASP GLU ALA ASN SER HIS ILE GLY TYR ALA MET THR SEQRES 6 C 213 LYS LEU GLN GLY GLY ALA PHE ILE ASP ILE TYR ASN GLU SEQRES 7 C 213 LEU GLU ASN ILE GLN HIS GLU LEU PHE ASP CYS GLY GLY SEQRES 8 C 213 ASP LEU ALA ILE VAL GLU GLN LYS ILE PRO TYR LYS VAL SEQRES 9 C 213 THR ILE VAL MET VAL GLU SER LEU GLU ARG LYS ILE ASP SEQRES 10 C 213 LEU TYR ILE GLU GLU ALA PRO PRO LEU GLU ARG PHE ILE SEQRES 11 C 213 LEU PRO GLY GLY SER GLU ALA ALA ALA THR ILE HIS ILE SEQRES 12 C 213 ALA ARG THR VAL VAL ARG ARG ALA GLU ARG SER ILE VAL SEQRES 13 C 213 SER LEU GLN LYS GLU VAL LYS ILE ASN GLU VAL VAL LEU SEQRES 14 C 213 LYS TYR VAL ASN ARG LEU SER ASP TYR LEU PHE ALA ILE SEQRES 15 C 213 ALA ARG VAL ILE ASN ALA ARG LEU GLN VAL LYS ASP VAL SEQRES 16 C 213 GLU TYR ASN ARG SER ALA VAL VAL PHE ARG ASP LYS LYS SEQRES 17 C 213 GLU LYS GLU VAL GLU HET ATP A 203 31 HET MG A 204 1 HET ATP B 201 31 HET MG B 205 1 HET ATP C 202 31 HET MG C 206 1 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 4 ATP 3(C10 H16 N5 O13 P3) FORMUL 5 MG 3(MG 2+) FORMUL 10 HOH *340(H2 O) HELIX 1 1 ASP A 24 THR A 45 1 22 HELIX 2 2 GLY A 49 ALA A 51 5 3 HELIX 3 3 PHE A 52 ALA A 74 1 23 HELIX 4 4 THR A 85 ALA A 103 1 19 HELIX 5 5 SER A 115 VAL A 142 1 28 HELIX 6 6 ASN A 145 LEU A 170 1 26 HELIX 7 7 ASP B 24 LYS B 46 1 23 HELIX 8 8 GLY B 49 ALA B 51 5 3 HELIX 9 9 PHE B 52 ALA B 74 1 23 HELIX 10 10 THR B 85 ALA B 103 1 19 HELIX 11 11 SER B 115 LYS B 140 1 26 HELIX 12 12 ASN B 145 LEU B 170 1 26 HELIX 13 13 ASP C 24 THR C 45 1 22 HELIX 14 14 GLY C 49 ALA C 51 5 3 HELIX 15 15 PHE C 52 ALA C 74 1 23 HELIX 16 16 THR C 85 ALA C 103 1 19 HELIX 17 17 SER C 115 VAL C 142 1 28 HELIX 18 18 ASN C 145 LEU C 170 1 26 SHEET 1 A 2 THR A 12 VAL A 15 0 SHEET 2 A 2 GLY A 18 ASP A 21 -1 O GLY A 18 N VAL A 15 SHEET 1 B 2 THR B 12 VAL B 15 0 SHEET 2 B 2 GLY B 18 ASP B 21 -1 O GLY B 18 N VAL B 15 SHEET 1 C 2 THR C 12 VAL C 15 0 SHEET 2 C 2 GLY C 18 ASP C 21 -1 O GLY C 18 N VAL C 15 SHEET 1 D 2 ILE C 110 LEU C 111 0 SHEET 2 D 2 VAL C 175 GLU C 176 -1 O VAL C 175 N LEU C 111 LINK OD1 ASN A 153 MG MG A 204 1555 1555 2.24 LINK O3G ATP A 203 MG MG C 206 1555 1555 2.43 LINK O1B ATP A 203 MG MG C 206 1555 1555 2.41 LINK O1A ATP A 203 MG MG C 206 1555 1555 2.31 LINK MG MG A 204 O HOH A 510 1555 1555 2.40 LINK MG MG A 204 O HOH A 511 1555 1555 2.27 LINK MG MG A 204 O3G ATP B 201 1555 1555 2.43 LINK MG MG A 204 O1B ATP B 201 1555 1555 2.42 LINK MG MG A 204 O1A ATP B 201 1555 1555 2.34 LINK OD1 ASN B 153 MG MG B 205 1555 1555 2.19 LINK MG MG B 205 O HOH B 515 1555 1555 2.24 LINK MG MG B 205 O HOH B 516 1555 1555 2.51 LINK MG MG B 205 O3G ATP C 202 1555 1555 2.48 LINK MG MG B 205 O1B ATP C 202 1555 1555 2.48 LINK MG MG B 205 O1A ATP C 202 1555 1555 2.31 LINK OD1 ASN C 153 MG MG C 206 1555 1555 2.14 LINK MG MG C 206 O HOH C 519 1555 1555 2.29 LINK MG MG C 206 O HOH C 520 1555 1555 2.38 SITE 1 AC1 18 THR A 5 LYS A 6 GLY A 8 THR A 13 SITE 2 AC1 18 SER A 14 LYS A 22 VAL A 27 HOH A 522 SITE 3 AC1 18 HOH A 549 HOH A 556 ARG C 129 GLU C 132 SITE 4 AC1 18 ARG C 133 ASN C 153 ASP C 157 MG C 206 SITE 5 AC1 18 HOH C 520 HOH C 521 SITE 1 AC2 4 ASN A 153 HOH A 510 HOH A 511 ATP B 201 SITE 1 AC3 18 ARG A 129 GLU A 132 ARG A 133 ASN A 153 SITE 2 AC3 18 ASP A 157 MG A 204 HOH A 510 HOH A 512 SITE 3 AC3 18 THR B 5 LYS B 6 GLY B 8 THR B 13 SITE 4 AC3 18 SER B 14 LYS B 22 VAL B 27 GLY B 31 SITE 5 AC3 18 HOH B 513 HOH B 514 SITE 1 AC4 4 ASN B 153 HOH B 515 HOH B 516 ATP C 202 SITE 1 AC5 18 ARG B 129 GLU B 132 ARG B 133 ASN B 153 SITE 2 AC5 18 ASP B 157 MG B 205 HOH B 516 HOH B 518 SITE 3 AC5 18 THR C 5 LYS C 6 GLY C 8 THR C 13 SITE 4 AC5 18 SER C 14 LYS C 22 VAL C 27 HOH C 517 SITE 5 AC5 18 HOH C 593 HOH C 598 SITE 1 AC6 4 ATP A 203 ASN C 153 HOH C 519 HOH C 520 CRYST1 64.925 137.042 158.263 90.00 90.00 90.00 C 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015402 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007297 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006319 0.00000