HEADER OXIDOREDUCTASE 24-OCT-09 3KE9 TITLE CRYSTAL STRUCTURE OF ISPH:INTERMEDIATE-COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: 4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.17.1.2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K-12; SOURCE 5 GENE: B0029, ISPH, JW0027, LYTB, YAAE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: XL1-BLUE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQE30 KEYWDS FS4-CLUSTER PROTEIN, ALL THREE DOMAINS ADOPT SIMILAR TOPOLOGY, KEYWDS 2 ISPH:INTERMEDIATE COMPLEX, IRON, IRON-SULFUR, ISOPRENE BIOSYNTHESIS, KEYWDS 3 METAL-BINDING, NADP, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.GROLL,T.GRAEWERT,I.SPAN,W.EISENREICH,A.BACHER REVDAT 3 01-NOV-23 3KE9 1 REMARK SEQADV REVDAT 2 04-DEC-13 3KE9 1 JRNL VERSN REVDAT 1 12-JAN-10 3KE9 0 JRNL AUTH T.GRAWERT,I.SPAN,W.EISENREICH,F.ROHDICH,J.EPPINGER,A.BACHER, JRNL AUTH 2 M.GROLL JRNL TITL PROBING THE REACTION MECHANISM OF ISPH PROTEIN BY X-RAY JRNL TITL 2 STRUCTURE ANALYSIS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 107 1077 2010 JRNL REFN ISSN 0027-8424 JRNL PMID 20080550 JRNL DOI 10.1073/PNAS.0913045107 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2118427.910 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 50372 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2550 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 7863 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE : 0.2690 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 427 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.013 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4773 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 484 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 9.64000 REMARK 3 B22 (A**2) : -11.11000 REMARK 3 B33 (A**2) : 1.47000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM SIGMAA (A) : 0.20 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.19 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 2.900 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.180 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.870 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.000 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.940 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.45 REMARK 3 BSOL : 65.41 REMARK 3 REMARK 3 NCS MODEL : NONE REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : COMBINE.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 3KE9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-NOV-09. REMARK 100 THE DEPOSITION ID IS D_1000055882. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-SEP-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI(1 1 1) CHANNEL CUT REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50748 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 10.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.100 REMARK 200 R MERGE (I) : 0.00520 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 8.30 REMARK 200 R MERGE FOR SHELL (I) : 0.40900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 3DNF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS, 0.2M LI2SO4, 25% PEG REMARK 280 3350, PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.80500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.34500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.41500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.34500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.80500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.41500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -9 REMARK 465 ARG A -8 REMARK 465 GLY A -7 REMARK 465 SER A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 VAL A 310 REMARK 465 ASP A 311 REMARK 465 ILE A 312 REMARK 465 ARG A 313 REMARK 465 GLU A 314 REMARK 465 VAL A 315 REMARK 465 ASP A 316 REMARK 465 MET B -9 REMARK 465 ARG B -8 REMARK 465 GLY B -7 REMARK 465 SER B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 ASP B 311 REMARK 465 ILE B 312 REMARK 465 ARG B 313 REMARK 465 GLU B 314 REMARK 465 VAL B 315 REMARK 465 ASP B 316 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 11 128.09 -39.31 REMARK 500 HIS A 37 162.06 70.21 REMARK 500 SER A 135 14.36 -150.42 REMARK 500 LYS A 193 -75.08 -134.23 REMARK 500 PHE B 11 130.14 -38.99 REMARK 500 HIS B 37 164.61 70.52 REMARK 500 LYS B 193 -69.21 -126.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 997 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 12 SG REMARK 620 2 SF4 A 997 S1 116.5 REMARK 620 3 SF4 A 997 S3 109.9 107.4 REMARK 620 4 SF4 A 997 S4 110.1 105.9 106.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 997 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 96 SG REMARK 620 2 SF4 A 997 S2 114.8 REMARK 620 3 SF4 A 997 S3 106.4 107.9 REMARK 620 4 SF4 A 997 S4 121.5 104.5 100.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 997 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 197 SG REMARK 620 2 SF4 A 997 S1 104.2 REMARK 620 3 SF4 A 997 S2 115.5 107.8 REMARK 620 4 SF4 A 997 S4 126.9 99.3 100.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 997 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 12 SG REMARK 620 2 SF4 B 997 S1 117.3 REMARK 620 3 SF4 B 997 S3 111.3 108.0 REMARK 620 4 SF4 B 997 S4 107.2 105.9 106.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 997 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 96 SG REMARK 620 2 SF4 B 997 S2 114.8 REMARK 620 3 SF4 B 997 S3 105.5 107.7 REMARK 620 4 SF4 B 997 S4 122.8 104.4 100.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 997 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 197 SG REMARK 620 2 SF4 B 997 S1 104.3 REMARK 620 3 SF4 B 997 S2 116.2 108.2 REMARK 620 4 SF4 B 997 S4 125.5 99.3 101.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF4 A 997 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPE A 998 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF4 B 997 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPE B 998 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3F7T RELATED DB: PDB REMARK 900 ISPH OPEN CONFORMATION REMARK 900 RELATED ID: 3DNF RELATED DB: PDB REMARK 900 ISPH CLOSED CONFORMATION REMARK 900 RELATED ID: 3KE8 RELATED DB: PDB REMARK 900 RELATED ID: 3KEF RELATED DB: PDB REMARK 900 RELATED ID: 3KEL RELATED DB: PDB REMARK 900 RELATED ID: 3KEM RELATED DB: PDB DBREF 3KE9 A 1 316 UNP P62623 ISPH_ECOLI 1 316 DBREF 3KE9 B 1 316 UNP P62623 ISPH_ECOLI 1 316 SEQADV 3KE9 MET A -9 UNP P62623 EXPRESSION TAG SEQADV 3KE9 ARG A -8 UNP P62623 EXPRESSION TAG SEQADV 3KE9 GLY A -7 UNP P62623 EXPRESSION TAG SEQADV 3KE9 SER A -6 UNP P62623 EXPRESSION TAG SEQADV 3KE9 HIS A -5 UNP P62623 EXPRESSION TAG SEQADV 3KE9 HIS A -4 UNP P62623 EXPRESSION TAG SEQADV 3KE9 HIS A -3 UNP P62623 EXPRESSION TAG SEQADV 3KE9 HIS A -2 UNP P62623 EXPRESSION TAG SEQADV 3KE9 HIS A -1 UNP P62623 EXPRESSION TAG SEQADV 3KE9 HIS A 0 UNP P62623 EXPRESSION TAG SEQADV 3KE9 MET B -9 UNP P62623 EXPRESSION TAG SEQADV 3KE9 ARG B -8 UNP P62623 EXPRESSION TAG SEQADV 3KE9 GLY B -7 UNP P62623 EXPRESSION TAG SEQADV 3KE9 SER B -6 UNP P62623 EXPRESSION TAG SEQADV 3KE9 HIS B -5 UNP P62623 EXPRESSION TAG SEQADV 3KE9 HIS B -4 UNP P62623 EXPRESSION TAG SEQADV 3KE9 HIS B -3 UNP P62623 EXPRESSION TAG SEQADV 3KE9 HIS B -2 UNP P62623 EXPRESSION TAG SEQADV 3KE9 HIS B -1 UNP P62623 EXPRESSION TAG SEQADV 3KE9 HIS B 0 UNP P62623 EXPRESSION TAG SEQRES 1 A 326 MET ARG GLY SER HIS HIS HIS HIS HIS HIS MET GLN ILE SEQRES 2 A 326 LEU LEU ALA ASN PRO ARG GLY PHE CYS ALA GLY VAL ASP SEQRES 3 A 326 ARG ALA ILE SER ILE VAL GLU ASN ALA LEU ALA ILE TYR SEQRES 4 A 326 GLY ALA PRO ILE TYR VAL ARG HIS GLU VAL VAL HIS ASN SEQRES 5 A 326 ARG TYR VAL VAL ASP SER LEU ARG GLU ARG GLY ALA ILE SEQRES 6 A 326 PHE ILE GLU GLN ILE SER GLU VAL PRO ASP GLY ALA ILE SEQRES 7 A 326 LEU ILE PHE SER ALA HIS GLY VAL SER GLN ALA VAL ARG SEQRES 8 A 326 ASN GLU ALA LYS SER ARG ASP LEU THR VAL PHE ASP ALA SEQRES 9 A 326 THR CYS PRO LEU VAL THR LYS VAL HIS MET GLU VAL ALA SEQRES 10 A 326 ARG ALA SER ARG ARG GLY GLU GLU SER ILE LEU ILE GLY SEQRES 11 A 326 HIS ALA GLY HIS PRO GLU VAL GLU GLY THR MET GLY GLN SEQRES 12 A 326 TYR SER ASN PRO GLU GLY GLY MET TYR LEU VAL GLU SER SEQRES 13 A 326 PRO ASP ASP VAL TRP LYS LEU THR VAL LYS ASN GLU GLU SEQRES 14 A 326 LYS LEU SER PHE MET THR GLN THR THR LEU SER VAL ASP SEQRES 15 A 326 ASP THR SER ASP VAL ILE ASP ALA LEU ARG LYS ARG PHE SEQRES 16 A 326 PRO LYS ILE VAL GLY PRO ARG LYS ASP ASP ILE CYS TYR SEQRES 17 A 326 ALA THR THR ASN ARG GLN GLU ALA VAL ARG ALA LEU ALA SEQRES 18 A 326 GLU GLN ALA GLU VAL VAL LEU VAL VAL GLY SER LYS ASN SEQRES 19 A 326 SER SER ASN SER ASN ARG LEU ALA GLU LEU ALA GLN ARG SEQRES 20 A 326 MET GLY LYS ARG ALA PHE LEU ILE ASP ASP ALA LYS ASP SEQRES 21 A 326 ILE GLN GLU GLU TRP VAL LYS GLU VAL LYS CYS VAL GLY SEQRES 22 A 326 VAL THR ALA GLY ALA SER ALA PRO ASP ILE LEU VAL GLN SEQRES 23 A 326 ASN VAL VAL ALA ARG LEU GLN GLN LEU GLY GLY GLY GLU SEQRES 24 A 326 ALA ILE PRO LEU GLU GLY ARG GLU GLU ASN ILE VAL PHE SEQRES 25 A 326 GLU VAL PRO LYS GLU LEU ARG VAL ASP ILE ARG GLU VAL SEQRES 26 A 326 ASP SEQRES 1 B 326 MET ARG GLY SER HIS HIS HIS HIS HIS HIS MET GLN ILE SEQRES 2 B 326 LEU LEU ALA ASN PRO ARG GLY PHE CYS ALA GLY VAL ASP SEQRES 3 B 326 ARG ALA ILE SER ILE VAL GLU ASN ALA LEU ALA ILE TYR SEQRES 4 B 326 GLY ALA PRO ILE TYR VAL ARG HIS GLU VAL VAL HIS ASN SEQRES 5 B 326 ARG TYR VAL VAL ASP SER LEU ARG GLU ARG GLY ALA ILE SEQRES 6 B 326 PHE ILE GLU GLN ILE SER GLU VAL PRO ASP GLY ALA ILE SEQRES 7 B 326 LEU ILE PHE SER ALA HIS GLY VAL SER GLN ALA VAL ARG SEQRES 8 B 326 ASN GLU ALA LYS SER ARG ASP LEU THR VAL PHE ASP ALA SEQRES 9 B 326 THR CYS PRO LEU VAL THR LYS VAL HIS MET GLU VAL ALA SEQRES 10 B 326 ARG ALA SER ARG ARG GLY GLU GLU SER ILE LEU ILE GLY SEQRES 11 B 326 HIS ALA GLY HIS PRO GLU VAL GLU GLY THR MET GLY GLN SEQRES 12 B 326 TYR SER ASN PRO GLU GLY GLY MET TYR LEU VAL GLU SER SEQRES 13 B 326 PRO ASP ASP VAL TRP LYS LEU THR VAL LYS ASN GLU GLU SEQRES 14 B 326 LYS LEU SER PHE MET THR GLN THR THR LEU SER VAL ASP SEQRES 15 B 326 ASP THR SER ASP VAL ILE ASP ALA LEU ARG LYS ARG PHE SEQRES 16 B 326 PRO LYS ILE VAL GLY PRO ARG LYS ASP ASP ILE CYS TYR SEQRES 17 B 326 ALA THR THR ASN ARG GLN GLU ALA VAL ARG ALA LEU ALA SEQRES 18 B 326 GLU GLN ALA GLU VAL VAL LEU VAL VAL GLY SER LYS ASN SEQRES 19 B 326 SER SER ASN SER ASN ARG LEU ALA GLU LEU ALA GLN ARG SEQRES 20 B 326 MET GLY LYS ARG ALA PHE LEU ILE ASP ASP ALA LYS ASP SEQRES 21 B 326 ILE GLN GLU GLU TRP VAL LYS GLU VAL LYS CYS VAL GLY SEQRES 22 B 326 VAL THR ALA GLY ALA SER ALA PRO ASP ILE LEU VAL GLN SEQRES 23 B 326 ASN VAL VAL ALA ARG LEU GLN GLN LEU GLY GLY GLY GLU SEQRES 24 B 326 ALA ILE PRO LEU GLU GLY ARG GLU GLU ASN ILE VAL PHE SEQRES 25 B 326 GLU VAL PRO LYS GLU LEU ARG VAL ASP ILE ARG GLU VAL SEQRES 26 B 326 ASP HET SF4 A 997 8 HET IPE A 998 14 HET SF4 B 997 8 HET IPE B 998 14 HETNAM SF4 IRON/SULFUR CLUSTER HETNAM IPE 3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE HETSYN IPE ISOPENTENYL PYROPHOSPHATE FORMUL 3 SF4 2(FE4 S4) FORMUL 4 IPE 2(C5 H12 O7 P2) FORMUL 7 HOH *484(H2 O) HELIX 1 1 CYS A 12 GLY A 30 1 19 HELIX 2 2 ASN A 42 GLY A 53 1 12 HELIX 3 3 GLN A 59 VAL A 63 5 5 HELIX 4 4 SER A 77 SER A 86 1 10 HELIX 5 5 CYS A 96 ARG A 112 1 17 HELIX 6 6 HIS A 124 GLY A 132 1 9 HELIX 7 7 SER A 146 LYS A 152 1 7 HELIX 8 8 SER A 170 PHE A 185 1 16 HELIX 9 9 CYS A 197 GLU A 212 1 16 HELIX 10 10 SER A 225 MET A 238 1 14 HELIX 11 11 ASP A 247 ILE A 251 5 5 HELIX 12 12 GLN A 252 LYS A 257 1 6 HELIX 13 13 PRO A 271 LEU A 285 1 15 HELIX 14 14 PRO A 305 ARG A 309 5 5 HELIX 15 15 CYS B 12 GLY B 30 1 19 HELIX 16 16 ASN B 42 ARG B 52 1 11 HELIX 17 17 GLN B 59 VAL B 63 5 5 HELIX 18 18 SER B 77 ARG B 87 1 11 HELIX 19 19 CYS B 96 ARG B 112 1 17 HELIX 20 20 HIS B 124 GLY B 132 1 9 HELIX 21 21 SER B 146 LYS B 152 1 7 HELIX 22 22 SER B 170 PHE B 185 1 16 HELIX 23 23 CYS B 197 ALA B 214 1 18 HELIX 24 24 SER B 225 MET B 238 1 14 HELIX 25 25 ASP B 247 ILE B 251 5 5 HELIX 26 26 GLN B 252 LYS B 257 1 6 HELIX 27 27 PRO B 271 LEU B 285 1 15 HELIX 28 28 PRO B 305 ARG B 309 5 5 SHEET 1 A 5 ARG A 241 ILE A 245 0 SHEET 2 A 5 VAL A 216 VAL A 220 1 N VAL A 219 O PHE A 243 SHEET 3 A 5 CYS A 261 ALA A 266 1 O GLY A 263 N VAL A 216 SHEET 4 A 5 GLN A 2 LEU A 5 1 N LEU A 4 O VAL A 264 SHEET 5 A 5 ALA A 290 PRO A 292 1 O ILE A 291 N ILE A 3 SHEET 1 B 4 ALA A 54 ILE A 57 0 SHEET 2 B 4 ILE A 33 ARG A 36 1 N ILE A 33 O ILE A 55 SHEET 3 B 4 ILE A 68 PHE A 71 1 O ILE A 68 N TYR A 34 SHEET 4 B 4 THR A 90 ASP A 93 1 O THR A 90 N LEU A 69 SHEET 1 C 3 MET A 141 VAL A 144 0 SHEET 2 C 3 GLU A 115 ILE A 119 1 N LEU A 118 O TYR A 142 SHEET 3 C 3 LEU A 161 THR A 165 1 O MET A 164 N ILE A 117 SHEET 1 D 2 ILE A 300 PHE A 302 0 SHEET 2 D 2 ILE B 300 PHE B 302 -1 O VAL B 301 N VAL A 301 SHEET 1 E 5 ARG B 241 ILE B 245 0 SHEET 2 E 5 VAL B 216 VAL B 220 1 N VAL B 217 O ARG B 241 SHEET 3 E 5 CYS B 261 ALA B 266 1 O GLY B 263 N VAL B 216 SHEET 4 E 5 GLN B 2 LEU B 5 1 N GLN B 2 O VAL B 262 SHEET 5 E 5 ALA B 290 PRO B 292 1 O ILE B 291 N ILE B 3 SHEET 1 F 4 ALA B 54 ILE B 57 0 SHEET 2 F 4 ILE B 33 ARG B 36 1 N ILE B 33 O ILE B 55 SHEET 3 F 4 ILE B 68 PHE B 71 1 O ILE B 70 N ARG B 36 SHEET 4 F 4 THR B 90 ASP B 93 1 O THR B 90 N LEU B 69 SHEET 1 G 3 MET B 141 VAL B 144 0 SHEET 2 G 3 GLU B 115 ILE B 119 1 N LEU B 118 O TYR B 142 SHEET 3 G 3 LEU B 161 THR B 165 1 O MET B 164 N ILE B 117 LINK SG CYS A 12 FE2 SF4 A 997 1555 1555 2.30 LINK SG CYS A 96 FE1 SF4 A 997 1555 1555 2.27 LINK SG CYS A 197 FE3 SF4 A 997 1555 1555 2.28 LINK SG CYS B 12 FE2 SF4 B 997 1555 1555 2.28 LINK SG CYS B 96 FE1 SF4 B 997 1555 1555 2.28 LINK SG CYS B 197 FE3 SF4 B 997 1555 1555 2.27 CISPEP 1 ASN A 7 PRO A 8 0 -0.12 CISPEP 2 ALA A 31 PRO A 32 0 -0.18 CISPEP 3 ASN B 7 PRO B 8 0 0.10 CISPEP 4 ALA B 31 PRO B 32 0 0.01 SITE 1 AC1 6 CYS A 12 GLY A 14 CYS A 96 THR A 167 SITE 2 AC1 6 CYS A 197 IPE A 998 SITE 1 AC2 15 VAL A 15 VAL A 40 HIS A 41 ALA A 73 SITE 2 AC2 15 HIS A 74 HIS A 124 GLU A 126 THR A 168 SITE 3 AC2 15 ASN A 224 SER A 225 SER A 226 ASN A 227 SITE 4 AC2 15 SER A 269 HOH A 532 SF4 A 997 SITE 1 AC3 6 CYS B 12 GLY B 14 CYS B 96 THR B 167 SITE 2 AC3 6 CYS B 197 IPE B 998 SITE 1 AC4 16 VAL B 15 VAL B 40 HIS B 41 ALA B 73 SITE 2 AC4 16 HIS B 74 HIS B 124 GLU B 126 THR B 167 SITE 3 AC4 16 THR B 168 ASN B 224 SER B 225 SER B 226 SITE 4 AC4 16 ASN B 227 SER B 269 HOH B 516 SF4 B 997 CRYST1 69.610 80.830 112.690 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014366 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012372 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008874 0.00000