HEADER CYTOKINE/INHIBITOR 26-OCT-09 3KER TITLE D-DOPACHROME TAUTOMERASE (D-DT)/ MACROPHAGE MIGRATION INHIBITORY TITLE 2 FACTOR 2 (MIF2) COMPLEXED WITH INHIBITOR 4-IPP COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-DOPACHROME DECARBOXYLASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: D-DOPACHROME TAUTOMERASE; COMPND 5 EC: 4.1.1.84; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: DDT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS TAUTOMERASE, INFLAMMATION, CYTOKINE, CYTOKINE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.ZIEROW,E.LOLIS REVDAT 6 06-SEP-23 3KER 1 REMARK REVDAT 5 21-OCT-20 3KER 1 JRNL REMARK LINK REVDAT 4 01-NOV-17 3KER 1 REMARK REVDAT 3 06-APR-11 3KER 1 HEADER KEYWDS REVDAT 2 15-DEC-10 3KER 1 MTRIX1 MTRIX2 MTRIX3 REVDAT 1 13-OCT-10 3KER 0 JRNL AUTH D.RAJASEKARAN,S.ZIEROW,M.SYED,R.BUCALA,V.BHANDARI,E.J.LOLIS JRNL TITL TARGETING DISTINCT TAUTOMERASE SITES OF D-DT AND MIF WITH A JRNL TITL 2 SINGLE MOLECULE FOR INHIBITION OF NEUTROPHIL LUNG JRNL TITL 3 RECRUITMENT. JRNL REF FASEB J. V. 28 4961 2014 JRNL REFN ESSN 1530-6860 JRNL PMID 25016026 JRNL DOI 10.1096/FJ.14-256636 REMARK 2 REMARK 2 RESOLUTION. 2.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 13889 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 695 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3632 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 8 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.39700 REMARK 3 B22 (A**2) : -1.39700 REMARK 3 B33 (A**2) : 2.79400 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.198 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.072 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.151 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.473 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 42.23 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS_TOPPAR:PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CNS_TOPPAR:DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : CNS_TOPPAR:WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : CNS_TOPPAR:ION.PARAM REMARK 3 PARAMETER FILE 5 : NEWDRGCNS.PAR REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : CNS_TOPPAR:PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : CNS_TOPPAR:DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : CNS_TOPPAR:WATER.TOP REMARK 3 TOPOLOGY FILE 4 : CNS_TOPPAR:ION.TOP REMARK 3 TOPOLOGY FILE 5 : NEWDRGCNS.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 ONE PROTEIN CHAIN WAS REFINED USING STRICT NCS, AND NCS SYMMETRY REMARK 3 OPERATORS WERE USED TO GENERATE THE OTHER THREE PEPTIDE POLYMERS REMARK 3 IN THE ASYMMETRIC UNIT. NCS AVERAGED MAPS WERE ALSO USED. THE REMARK 3 DEPOSITED MODEL THEREFORE IS AN AVERAGED MODEL FROM ALL FOUR REMARK 3 PEPTIDE POLYMERS IN THE ASYMMETRIC UNIT. THE FINAL MODEL DEPOSITED REMARK 3 HAS BEEN GENERATED BY REAL-SPACE TRANSFORMATIONS OF CHAIN A. REMARK 3 THE REAL SPACE ROTATION MATRIX TO GENERATE CHAIN B IS DESCRIBED BY: REMARK 3 ( -0.24621 0.22510 0.94271 ) REMARK 3 ( 0.82241 0.56320 0.08031 ) REMARK 3 ( -0.51286 0.79507 -0.32379 ). REMARK 3 THE REAL SPACE TRANSLATION VECTOR IS DESCRIBED BY: REMARK 3 (4.46522 -21.53777 46.77695). REMARK 3 REMARK 3 CHAIN C WAS GENERATED USING REAL SPACE ROTATION MATRIX: REMARK 3 ( -0.23956 0.81293 -0.53080 ) REMARK 3 ( 0.23408 0.57896 0.78104 ) REMARK 3 ( 0.94224 0.06285 -0.32898 ) AND REAL-SPACE TRANSLATION VECTOR: REMARK 3 (42.49111 -25.63348 12.28672). REMARK 3 REMARK 3 CHAIN D WAS GENERATED USING REAL SPACE ROTATION MATRIX: REMARK 3 ( -0.23956 0.81293 -0.53080 ) REMARK 3 ( 0.23408 0.57896 0.78104 ) REMARK 3 ( 0.94224 0.06285 -0.32898) AND THE REAL-SPACE TRANSLATION REMARK 3 VECTOR: REMARK 3 (47.24985 5.40733 42.11218) REMARK 4 REMARK 4 3KER COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000055900. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13925 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.780 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.12100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.51400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: 3KAN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1M SODIUM CITRATE, 0.1M TRIS, 0.2M REMARK 280 NACL, PH 7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 72.12650 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 72.12650 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 72.12650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER B 12 CB ALA B 24 2555 1.52 REMARK 500 OE1 GLU B 71 NE2 GLN D 72 5554 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 66 -8.39 -149.73 REMARK 500 ALA A 104 -36.02 -33.72 REMARK 500 THR A 112 -158.14 -155.42 REMARK 500 VAL B 66 -8.44 -149.74 REMARK 500 ALA B 104 -36.10 -33.66 REMARK 500 THR B 112 -158.12 -155.40 REMARK 500 VAL C 66 -8.45 -149.71 REMARK 500 ALA C 104 -36.01 -33.72 REMARK 500 THR C 112 -158.14 -155.43 REMARK 500 VAL D 66 -8.37 -149.69 REMARK 500 ALA D 104 -36.00 -33.76 REMARK 500 THR D 112 -158.18 -155.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RW1 A 120 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 118 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 119 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 121 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 122 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RW1 B 120 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 118 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 119 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 121 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 122 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RW1 C 120 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 118 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 119 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA C 121 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 122 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RW1 D 120 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL D 118 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL D 119 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA D 121 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL D 122 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3B9S RELATED DB: PDB REMARK 900 MACROPHAGE MIGRATION INHIBITORY FACTOR (MIF) COMPLEXED WITH REMARK 900 INHIBITOR, 4-IPP REMARK 900 RELATED ID: 3KAN RELATED DB: PDB REMARK 900 D-DOPACHROME TAUTOMERASE (D-DT)/MACROPHAGE MIGRATION INHIBITORY REMARK 900 FACTOR 2 (MIF2) COMPLEXED WITH INHIBITOR 4-IPP REMARK 900 RELATED ID: 3B64 RELATED DB: PDB REMARK 900 MACROPHAGE MIGRATION INHIBITORY FACTOR (MIF) FROM LEISHMANIA MAJOR REMARK 900 RELATED ID: 1MIF RELATED DB: PDB REMARK 900 MACROPHAGE MIGRATION INHIBITORY FACTOR (MIF) REMARK 900 RELATED ID: 1DPT RELATED DB: PDB REMARK 900 D-DOPACHROME TAUTOMERASE DBREF 3KER A 1 117 UNP O35215 DOPD_MOUSE 2 118 DBREF 3KER B 1 117 UNP O35215 DOPD_MOUSE 2 118 DBREF 3KER C 1 117 UNP O35215 DOPD_MOUSE 2 118 DBREF 3KER D 1 117 UNP O35215 DOPD_MOUSE 2 118 SEQRES 1 A 117 PRO PHE VAL GLU LEU GLU THR ASN LEU PRO ALA SER ARG SEQRES 2 A 117 ILE PRO ALA GLY LEU GLU ASN ARG LEU CYS ALA ALA THR SEQRES 3 A 117 ALA THR ILE LEU ASP LYS PRO GLU ASP ARG VAL SER VAL SEQRES 4 A 117 THR ILE ARG PRO GLY MET THR LEU LEU MET ASN LYS SER SEQRES 5 A 117 THR GLU PRO CYS ALA HIS LEU LEU VAL SER SER ILE GLY SEQRES 6 A 117 VAL VAL GLY THR ALA GLU GLN ASN ARG THR HIS SER ALA SEQRES 7 A 117 SER PHE PHE LYS PHE LEU THR GLU GLU LEU SER LEU ASP SEQRES 8 A 117 GLN ASP ARG ILE VAL ILE ARG PHE PHE PRO LEU GLU ALA SEQRES 9 A 117 TRP GLN ILE GLY LYS LYS GLY THR VAL MET THR PHE LEU SEQRES 1 B 117 PRO PHE VAL GLU LEU GLU THR ASN LEU PRO ALA SER ARG SEQRES 2 B 117 ILE PRO ALA GLY LEU GLU ASN ARG LEU CYS ALA ALA THR SEQRES 3 B 117 ALA THR ILE LEU ASP LYS PRO GLU ASP ARG VAL SER VAL SEQRES 4 B 117 THR ILE ARG PRO GLY MET THR LEU LEU MET ASN LYS SER SEQRES 5 B 117 THR GLU PRO CYS ALA HIS LEU LEU VAL SER SER ILE GLY SEQRES 6 B 117 VAL VAL GLY THR ALA GLU GLN ASN ARG THR HIS SER ALA SEQRES 7 B 117 SER PHE PHE LYS PHE LEU THR GLU GLU LEU SER LEU ASP SEQRES 8 B 117 GLN ASP ARG ILE VAL ILE ARG PHE PHE PRO LEU GLU ALA SEQRES 9 B 117 TRP GLN ILE GLY LYS LYS GLY THR VAL MET THR PHE LEU SEQRES 1 C 117 PRO PHE VAL GLU LEU GLU THR ASN LEU PRO ALA SER ARG SEQRES 2 C 117 ILE PRO ALA GLY LEU GLU ASN ARG LEU CYS ALA ALA THR SEQRES 3 C 117 ALA THR ILE LEU ASP LYS PRO GLU ASP ARG VAL SER VAL SEQRES 4 C 117 THR ILE ARG PRO GLY MET THR LEU LEU MET ASN LYS SER SEQRES 5 C 117 THR GLU PRO CYS ALA HIS LEU LEU VAL SER SER ILE GLY SEQRES 6 C 117 VAL VAL GLY THR ALA GLU GLN ASN ARG THR HIS SER ALA SEQRES 7 C 117 SER PHE PHE LYS PHE LEU THR GLU GLU LEU SER LEU ASP SEQRES 8 C 117 GLN ASP ARG ILE VAL ILE ARG PHE PHE PRO LEU GLU ALA SEQRES 9 C 117 TRP GLN ILE GLY LYS LYS GLY THR VAL MET THR PHE LEU SEQRES 1 D 117 PRO PHE VAL GLU LEU GLU THR ASN LEU PRO ALA SER ARG SEQRES 2 D 117 ILE PRO ALA GLY LEU GLU ASN ARG LEU CYS ALA ALA THR SEQRES 3 D 117 ALA THR ILE LEU ASP LYS PRO GLU ASP ARG VAL SER VAL SEQRES 4 D 117 THR ILE ARG PRO GLY MET THR LEU LEU MET ASN LYS SER SEQRES 5 D 117 THR GLU PRO CYS ALA HIS LEU LEU VAL SER SER ILE GLY SEQRES 6 D 117 VAL VAL GLY THR ALA GLU GLN ASN ARG THR HIS SER ALA SEQRES 7 D 117 SER PHE PHE LYS PHE LEU THR GLU GLU LEU SER LEU ASP SEQRES 8 D 117 GLN ASP ARG ILE VAL ILE ARG PHE PHE PRO LEU GLU ALA SEQRES 9 D 117 TRP GLN ILE GLY LYS LYS GLY THR VAL MET THR PHE LEU HET RW1 A 120 12 HET CL A 118 1 HET CL A 119 1 HET NA A 121 1 HET CL A 122 1 HET RW1 B 120 12 HET CL B 118 1 HET CL B 119 1 HET NA B 121 1 HET CL B 122 1 HET RW1 C 120 12 HET CL C 118 1 HET CL C 119 1 HET NA C 121 1 HET CL C 122 1 HET RW1 D 120 12 HET CL D 118 1 HET CL D 119 1 HET NA D 121 1 HET CL D 122 1 HETNAM RW1 4-PHENYLPYRIMIDINE HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETSYN RW1 6-PHENYLPYRIMIDINE FORMUL 5 RW1 4(C10 H8 N2) FORMUL 6 CL 12(CL 1-) FORMUL 8 NA 4(NA 1+) FORMUL 25 HOH *8(H2 O) HELIX 1 1 PRO A 10 ILE A 14 5 5 HELIX 2 2 GLY A 17 ASP A 31 1 15 HELIX 3 3 PRO A 33 ARG A 36 5 4 HELIX 4 4 THR A 69 SER A 89 1 21 HELIX 5 5 ASP A 91 ASP A 93 5 3 HELIX 6 6 GLU A 103 TRP A 105 5 3 HELIX 7 7 THR A 115 LEU A 117 5 3 HELIX 8 8 PRO B 10 ILE B 14 5 5 HELIX 9 9 GLY B 17 ASP B 31 1 15 HELIX 10 10 PRO B 33 ARG B 36 5 4 HELIX 11 11 THR B 69 SER B 89 1 21 HELIX 12 12 ASP B 91 ASP B 93 5 3 HELIX 13 13 GLU B 103 TRP B 105 5 3 HELIX 14 14 THR B 115 LEU B 117 5 3 HELIX 15 15 PRO C 10 ILE C 14 5 5 HELIX 16 16 GLY C 17 ASP C 31 1 15 HELIX 17 17 PRO C 33 VAL C 37 5 5 HELIX 18 18 THR C 69 SER C 89 1 21 HELIX 19 19 ASP C 91 ASP C 93 5 3 HELIX 20 20 GLU C 103 TRP C 105 5 3 HELIX 21 21 THR C 115 LEU C 117 5 3 HELIX 22 22 PRO D 10 ILE D 14 5 5 HELIX 23 23 GLY D 17 ASP D 31 1 15 HELIX 24 24 PRO D 33 VAL D 37 5 5 HELIX 25 25 THR D 69 SER D 89 1 21 HELIX 26 26 ASP D 91 ASP D 93 5 3 HELIX 27 27 GLU D 103 GLN D 106 5 4 HELIX 28 28 THR D 115 LEU D 117 5 3 SHEET 1 A 7 THR B 46 MET B 49 0 SHEET 2 A 7 SER A 38 ARG A 42 -1 N ILE A 41 O THR B 46 SHEET 3 A 7 PHE A 2 THR A 7 1 N VAL A 3 O SER A 38 SHEET 4 A 7 ALA A 57 ILE A 64 -1 O LEU A 60 N GLU A 4 SHEET 5 A 7 ILE A 95 LEU A 102 1 O PHE A 100 N VAL A 61 SHEET 6 A 7 ILE C 107 LYS C 109 -1 O GLY C 108 N ILE A 97 SHEET 7 A 7 THR C 112 VAL C 113 -1 O THR C 112 N LYS C 109 SHEET 1 B 7 THR A 46 LEU A 48 0 SHEET 2 B 7 SER C 38 ARG C 42 -1 O VAL C 39 N LEU A 48 SHEET 3 B 7 PHE C 2 THR C 7 1 N VAL C 3 O SER C 38 SHEET 4 B 7 ALA C 57 ILE C 64 -1 O LEU C 60 N GLU C 4 SHEET 5 B 7 ILE C 95 LEU C 102 1 O PHE C 100 N VAL C 61 SHEET 6 B 7 ILE B 107 LYS B 109 -1 N GLY B 108 O ILE C 97 SHEET 7 B 7 THR B 112 VAL B 113 -1 O THR B 112 N LYS B 109 SHEET 1 C 7 THR A 112 VAL A 113 0 SHEET 2 C 7 ILE A 107 LYS A 109 -1 N LYS A 109 O THR A 112 SHEET 3 C 7 ILE B 95 LEU B 102 -1 O ILE B 97 N GLY A 108 SHEET 4 C 7 ALA B 57 ILE B 64 1 N VAL B 61 O PHE B 100 SHEET 5 C 7 PHE B 2 THR B 7 -1 N GLU B 4 O LEU B 60 SHEET 6 C 7 SER B 38 ARG B 42 1 O SER B 38 N VAL B 3 SHEET 7 C 7 THR C 46 MET C 49 -1 O THR C 46 N ILE B 41 SHEET 1 D 4 SER D 38 ARG D 42 0 SHEET 2 D 4 PHE D 2 THR D 7 1 N VAL D 3 O SER D 38 SHEET 3 D 4 ALA D 57 ILE D 64 -1 O LEU D 60 N GLU D 4 SHEET 4 D 4 ILE D 95 LEU D 102 1 O PHE D 100 N VAL D 61 SHEET 1 E 2 GLY D 108 LYS D 109 0 SHEET 2 E 2 THR D 112 VAL D 113 -1 O THR D 112 N LYS D 109 LINK N PRO A 1 C4 RW1 A 120 1555 1555 1.40 LINK N PRO B 1 C4 RW1 B 120 1555 1555 1.40 LINK N PRO C 1 C4 RW1 C 120 1555 1555 1.40 LINK N PRO D 1 C4 RW1 D 120 1555 1555 1.40 LINK OG1 THR A 46 NA NA A 121 1555 1555 2.97 LINK OG1 THR B 46 NA NA B 121 1555 1555 2.97 LINK OG1 THR C 46 NA NA C 121 1555 1555 2.97 LINK OG1 THR D 46 NA NA D 121 1555 1555 2.97 SITE 1 AC1 9 PRO A 1 PHE A 2 PRO A 33 ARG A 36 SITE 2 AC1 9 ILE A 107 LYS A 109 MET A 114 CL A 118 SITE 3 AC1 9 LEU D 117 SITE 1 AC2 5 PRO A 1 LYS A 32 SER A 63 ILE A 64 SITE 2 AC2 5 RW1 A 120 SITE 1 AC3 2 PRO A 10 ALA A 11 SITE 1 AC4 1 THR A 46 SITE 1 AC5 3 ASN A 8 THR A 46 LEU A 47 SITE 1 AC6 8 PRO B 1 PHE B 2 PRO B 33 ARG B 36 SITE 2 AC6 8 ILE B 107 LYS B 109 MET B 114 CL B 118 SITE 1 AC7 5 PRO B 1 LYS B 32 SER B 63 ILE B 64 SITE 2 AC7 5 RW1 B 120 SITE 1 AC8 2 PRO B 10 ALA B 11 SITE 1 AC9 2 PRO A 43 THR B 46 SITE 1 BC1 3 ASN B 8 THR B 46 LEU B 47 SITE 1 BC2 9 LEU B 117 PRO C 1 PHE C 2 PRO C 33 SITE 2 BC2 9 ARG C 36 ILE C 107 LYS C 109 MET C 114 SITE 3 BC2 9 CL C 118 SITE 1 BC3 5 PRO C 1 LYS C 32 SER C 63 ILE C 64 SITE 2 BC3 5 RW1 C 120 SITE 1 BC4 2 PRO C 10 ALA C 11 SITE 1 BC5 1 THR C 46 SITE 1 BC6 3 ASN C 8 THR C 46 LEU C 47 SITE 1 BC7 8 PRO D 1 PHE D 2 PRO D 33 ARG D 36 SITE 2 BC7 8 ILE D 107 LYS D 109 MET D 114 CL D 118 SITE 1 BC8 5 PRO D 1 LYS D 32 SER D 63 ILE D 64 SITE 2 BC8 5 RW1 D 120 SITE 1 BC9 2 PRO D 10 ALA D 11 SITE 1 CC1 1 THR D 46 SITE 1 CC2 3 ASN D 8 THR D 46 LEU D 47 CRYST1 82.172 82.172 144.253 90.00 90.00 120.00 P 63 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012170 0.007026 0.000000 0.00000 SCALE2 0.000000 0.014052 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006932 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 -0.246200 0.225100 0.942700 4.46520 1 MTRIX2 2 0.822400 0.563200 0.080300 -21.53780 1 MTRIX3 2 -0.512900 0.795100 -0.323800 46.77700 1 MTRIX1 3 -0.239600 0.812900 -0.530800 42.49110 1 MTRIX2 3 0.234100 0.579000 0.781000 -25.63350 1 MTRIX3 3 0.942200 0.062800 -0.329000 12.28670 1 MTRIX1 4 -0.826100 0.209600 0.523000 47.24990 1 MTRIX2 4 -0.369800 0.498600 -0.784000 5.40730 1 MTRIX3 4 -0.425100 -0.841100 -0.334400 42.11220 1