HEADER STRUCTURAL PROTEIN 26-OCT-09 3KEY TITLE CRYSTAL STRUCTURE OF S. CEREVISIAE STN1 C-TERMINAL COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN STN1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL FRAGMENT: UNP RESIDUES 311-494; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: STN1, YDR082W, D4456, YD8554.15; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS BUTTERFLY WING-SHAPED, HELIX, CHROMOSOMAL PROTEIN, PHOSPHOPROTEIN, KEYWDS 2 TELOMERE, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.SUN,E.Y.YU,Y.T.YANG,L.A.CONFER,S.H.SUN,K.WAN,N.F.LUE,M.LEI REVDAT 3 01-NOV-17 3KEY 1 REMARK REVDAT 2 29-DEC-09 3KEY 1 JRNL REVDAT 1 22-DEC-09 3KEY 0 JRNL AUTH J.SUN,E.Y.YU,Y.YANG,L.A.CONFER,S.H.SUN,K.WAN,N.F.LUE,M.LEI JRNL TITL STN1-TEN1 IS AN RPA2-RPA3-LIKE COMPLEX AT TELOMERES. JRNL REF GENES DEV. V. 23 2900 2009 JRNL REFN ISSN 0890-9369 JRNL PMID 20008938 JRNL DOI 10.1101/GAD.1851909 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 15826 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 768 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1414 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 73 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3KEY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-NOV-09. REMARK 100 THE DEPOSITION ID IS D_1000055907. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16057 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 9.200 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 35.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 6000, 2 M NACL, 0.1 M HEPES PH REMARK 280 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.19850 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 26.47850 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 26.47850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 139.79775 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 26.47850 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 26.47850 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 46.59925 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 26.47850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 26.47850 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 139.79775 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 26.47850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 26.47850 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 46.59925 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 93.19850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 310 REMARK 465 ASN A 311 REMARK 465 PRO A 472 REMARK 465 LYS A 473 REMARK 465 ASN A 474 REMARK 465 GLY A 475 REMARK 465 MET A 476 REMARK 465 GLU A 477 REMARK 465 ASP A 478 REMARK 465 GLN A 479 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3KF6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF S. POMBE STN1-TEN1 COMPLEX REMARK 900 RELATED ID: 3KF8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF C. TROPICALIS STN1-TEN1 COMPLEX DBREF 3KEY A 311 494 UNP P38960 STN1_YEAST 311 494 SEQADV 3KEY SER A 310 UNP P38960 EXPRESSION TAG SEQRES 1 A 185 SER ASN ARG THR SER ALA LYS SER ASN LEU MET LEU ILE SEQRES 2 A 185 LEU LEU GLY LEU GLN MET LYS GLU ILE SER ASN SER ASP SEQRES 3 A 185 LEU TYR LYS LEU LYS GLU VAL ARG SER VAL VAL THR SER SEQRES 4 A 185 LEU ALA SER PHE LEU PHE GLN GLN GLN ASN VAL GLY VAL SEQRES 5 A 185 MET LYS SER PHE ASP SER LEU GLU LYS GLU ALA PHE ARG SEQRES 6 A 185 ASP LEU VAL ASN ARG LEU VAL SER GLN GLY LEU ILE GLY SEQRES 7 A 185 LEU LYS ASP LYS THR SER GLU THR PHE ASP LEU LEU PRO SEQRES 8 A 185 LEU LYS ASN LEU PHE GLU TYR ALA GLU LYS ARG ILE SER SEQRES 9 A 185 VAL LEU MET LYS LEU GLN CYS TYR THR GLY THR VAL GLN SEQRES 10 A 185 LEU SER HIS VAL GLN GLU LYS LEU HIS LEU PRO TYR ILE SEQRES 11 A 185 THR THR ASN GLY ILE VAL ASP VAL PHE LYS GLU CYS LEU SEQRES 12 A 185 LYS ARG THR LYS LYS GLN TYR PRO GLU VAL LEU LYS ASN SEQRES 13 A 185 TRP TRP ILE ASP LEU ASP PRO LYS ASN GLY MET GLU ASP SEQRES 14 A 185 GLN ASN SER GLY ILE LEU LEU HIS LEU GLU TYR ALA ALA SEQRES 15 A 185 ALA TYR SER FORMUL 2 HOH *73(H2 O) HELIX 1 1 SER A 314 LEU A 326 1 13 HELIX 2 2 ASN A 333 LYS A 338 1 6 HELIX 3 3 LEU A 339 GLN A 357 1 19 HELIX 4 4 SER A 364 GLN A 383 1 20 HELIX 5 5 LEU A 398 LEU A 418 1 21 HELIX 6 6 LEU A 427 HIS A 435 1 9 HELIX 7 7 THR A 440 TYR A 459 1 20 SHEET 1 A 3 GLU A 330 SER A 332 0 SHEET 2 A 3 THR A 395 ASP A 397 -1 O PHE A 396 N ILE A 331 SHEET 3 A 3 GLY A 387 ASP A 390 -1 N GLY A 387 O ASP A 397 SHEET 1 B 3 THR A 422 GLN A 426 0 SHEET 2 B 3 GLY A 482 TYR A 489 -1 O LEU A 485 N GLY A 423 SHEET 3 B 3 LEU A 463 LEU A 470 -1 N TRP A 467 O HIS A 486 SSBOND 1 CYS A 420 CYS A 420 1555 7556 2.44 CRYST1 52.957 52.957 186.397 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018883 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018883 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005365 0.00000