data_3KF0 # _entry.id 3KF0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.378 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3KF0 pdb_00003kf0 10.2210/pdb3kf0/pdb RCSB RCSB055909 ? ? WWPDB D_1000055909 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2AZ8 'HIV-1 PROTEASE NL4-3 IN COMPLEX WITH INHIBITOR, TL-3, WILD TYPE' unspecified PDB 2AZ9 'HIV-1 PROTEASE NL4-3 IN COMPLEX WITH INHIBITOR, TL-3, 1X MUTANT' unspecified PDB 2AZB 'HIV-1 PROTEASE NL4-3 IN COMPLEX WITH INHIBITOR, TL-3, 3X MUTANT' unspecified PDB 2AZC 'HIV-1 PROTEASE NL4-3 IN COMPLEX WITH INHIBITOR, TL-3, 6X MUTANT' unspecified PDB 3KF1 'HIV Protease (PR) dimer without inhibitor; acetate in exo site' unspecified PDB 3KFN 'HIV Protease (PR) with inhibitor TL-3 and fragment hit 4D9 by soaking' unspecified PDB 3KFP 'HIV Protease (PR) with inhibitor TL-3 bound, and DMSOs in exo site' unspecified PDB 3KFR 'HIV Protease (PR) dimer with inhibitor TL-3 bound and fragment 1F1 in the outside/top of flap' unspecified PDB 3KFS 'HIV Protease (PR) dimer with inhibitor TL-3 bound and fragment 2F4 in the outside/top of flap' unspecified # _pdbx_database_status.entry_id 3KF0 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-10-27 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Stout, C.D.' 1 'Perryman, A.L.' 2 # _citation.id primary _citation.title 'Fragment-based screen against HIV protease.' _citation.journal_abbrev 'Chem.Biol.Drug Des.' _citation.journal_volume 75 _citation.page_first 257 _citation.page_last 268 _citation.year 2010 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1747-0277 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20659109 _citation.pdbx_database_id_DOI 10.1111/j.1747-0285.2009.00943.x # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Perryman, A.L.' 1 ? primary 'Zhang, Q.' 2 ? primary 'Soutter, H.H.' 3 ? primary 'Rosenfeld, R.' 4 ? primary 'McRee, D.E.' 5 ? primary 'Olson, A.J.' 6 ? primary 'Elder, J.E.' 7 ? primary 'David Stout, C.' 8 ? # _cell.length_a 59.518 _cell.length_b 85.910 _cell.length_c 46.440 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3KF0 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.entry_id 3KF0 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 18 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Protease 10831.833 2 3.4.23.16 ? ? ? 2 non-polymer syn ;benzyl [(1S,4S,7S,8R,9R,10S,13S,16S)-7,10-dibenzyl-8,9-dihydroxy-1,16-dimethyl-4,13-bis(1-methylethyl)-2,5,12,15,18-pentaoxo-20-phenyl-19-oxa-3,6,11,14,17-pentaazaicos-1-yl]carbamate ; 909.077 1 ? ? ? ? 3 non-polymer syn '(1S,2S)-2-methylcyclohexanol' 114.185 1 ? ? ? ? 4 non-polymer syn 'DIMETHYL SULFOXIDE' 78.133 3 ? ? ? ? 5 non-polymer syn 'POTASSIUM ION' 39.098 2 ? ? ? ? 6 non-polymer syn BETA-MERCAPTOETHANOL 78.133 1 ? ? ? ? 7 water nat water 18.015 211 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;PQITLWKRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF ; _entity_poly.pdbx_seq_one_letter_code_can ;PQITLWKRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 GLN n 1 3 ILE n 1 4 THR n 1 5 LEU n 1 6 TRP n 1 7 LYS n 1 8 ARG n 1 9 PRO n 1 10 LEU n 1 11 VAL n 1 12 THR n 1 13 ILE n 1 14 LYS n 1 15 ILE n 1 16 GLY n 1 17 GLY n 1 18 GLN n 1 19 LEU n 1 20 LYS n 1 21 GLU n 1 22 ALA n 1 23 LEU n 1 24 LEU n 1 25 ASP n 1 26 THR n 1 27 GLY n 1 28 ALA n 1 29 ASP n 1 30 ASP n 1 31 THR n 1 32 VAL n 1 33 LEU n 1 34 GLU n 1 35 GLU n 1 36 MET n 1 37 ASN n 1 38 LEU n 1 39 PRO n 1 40 GLY n 1 41 ARG n 1 42 TRP n 1 43 LYS n 1 44 PRO n 1 45 LYS n 1 46 MET n 1 47 ILE n 1 48 GLY n 1 49 GLY n 1 50 ILE n 1 51 GLY n 1 52 GLY n 1 53 PHE n 1 54 ILE n 1 55 LYS n 1 56 VAL n 1 57 ARG n 1 58 GLN n 1 59 TYR n 1 60 ASP n 1 61 GLN n 1 62 ILE n 1 63 LEU n 1 64 ILE n 1 65 GLU n 1 66 ILE n 1 67 CYS n 1 68 GLY n 1 69 HIS n 1 70 LYS n 1 71 ALA n 1 72 ILE n 1 73 GLY n 1 74 THR n 1 75 VAL n 1 76 LEU n 1 77 VAL n 1 78 GLY n 1 79 PRO n 1 80 THR n 1 81 PRO n 1 82 VAL n 1 83 ASN n 1 84 ILE n 1 85 ILE n 1 86 GLY n 1 87 ARG n 1 88 ASN n 1 89 LEU n 1 90 LEU n 1 91 THR n 1 92 GLN n 1 93 ILE n 1 94 GLY n 1 95 CYS n 1 96 THR n 1 97 LEU n 1 98 ASN n 1 99 PHE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HIV-1 _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene POL _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain R8 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Human immunodeficiency virus 1' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 11676 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21.DE3 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'PET 21A+' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q903N5_9HIV1 _struct_ref.pdbx_db_accession Q903N5 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;PQITLWRRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3KF0 A 1 ? 99 ? Q903N5 1 ? 99 ? 1 99 2 1 3KF0 B 1 ? 99 ? Q903N5 1 ? 99 ? 1 99 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3KF0 LYS A 7 ? UNP Q903N5 ARG 7 'engineered mutation' 7 1 2 3KF0 LYS B 7 ? UNP Q903N5 ARG 7 'engineered mutation' 7 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 3TL peptide-like . ;benzyl [(1S,4S,7S,8R,9R,10S,13S,16S)-7,10-dibenzyl-8,9-dihydroxy-1,16-dimethyl-4,13-bis(1-methylethyl)-2,5,12,15,18-pentaoxo-20-phenyl-19-oxa-3,6,11,14,17-pentaazaicos-1-yl]carbamate ; 'TL-3, C2 symmetric inhibitor' 'C50 H64 N6 O10' 909.077 4DX non-polymer . '(1S,2S)-2-methylcyclohexanol' trans-2-methylcyclohexanol 'C7 H14 O' 114.185 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BME non-polymer . BETA-MERCAPTOETHANOL ? 'C2 H6 O S' 78.133 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DMS non-polymer . 'DIMETHYL SULFOXIDE' ? 'C2 H6 O S' 78.133 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3KF0 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.74 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 55.11 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.pH 5.8 _exptl_crystal_grow.temp 277.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '0.5 M KSCN, 0.1 M MES-HCL, pH 5.8, 10% DMSO, VAPOR DIFFUSION, temperature 277.0K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR scanner 345 mm plate' _diffrn_detector.pdbx_collection_date 2008-07-26 _diffrn_detector.details ;Monochromator:Side scattering bent cube-root I-beam single crystal; asymmetric cut 4.965 degs; Mirrors: Rh coated flat mirror ; # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Monochromator:Side scattering bent cube-root I-beam single crystal; asymmetric cut 4.965 degs;' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97945 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97945 _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL11-1 # _reflns.entry_id 3KF0 _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I 0.0 _reflns.d_resolution_high 1.80 _reflns.d_resolution_low 31.53 _reflns.number_all 22686 _reflns.number_obs 21597 _reflns.percent_possible_obs 95.2 _reflns.pdbx_Rmerge_I_obs 0.064 _reflns.pdbx_Rsym_value 0.064 _reflns.pdbx_netI_over_sigmaI 5.5 _reflns.B_iso_Wilson_estimate 23.1 _reflns.pdbx_redundancy 3.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.80 _reflns_shell.d_res_low 1.85 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 75.4 _reflns_shell.Rmerge_I_obs 0.183 _reflns_shell.meanI_over_sigI_obs 3.8 _reflns_shell.pdbx_Rsym_value 0.183 _reflns_shell.pdbx_redundancy 2.1 _reflns_shell.number_unique_all 3398 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3KF0 _refine.ls_d_res_high 1.800 _refine.ls_d_res_low 31.530 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 95.2 _refine.ls_number_reflns_obs 21566 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS; U VALUES: REFINED INDIVIDUALLY' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.208 _refine.ls_R_factor_R_work 0.206 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.246 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 1106 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 27.867 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model Isotropic _refine.aniso_B[1][1] 2.820 _refine.aniso_B[2][2] -1.750 _refine.aniso_B[3][3] -1.060 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.949 _refine.correlation_coeff_Fo_to_Fc_free 0.937 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.140 _refine.pdbx_overall_ESU_R_Free 0.134 _refine.overall_SU_ML 0.097 _refine.overall_SU_B 3.079 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'Dimer generated from PDB entry 2AZ8' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 95.55 _refine.B_iso_min 15.10 _refine.occupancy_max 1.00 _refine.occupancy_min 0.50 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1518 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 92 _refine_hist.number_atoms_solvent 211 _refine_hist.number_atoms_total 1821 _refine_hist.d_res_high 1.800 _refine_hist.d_res_low 31.530 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1829 0.009 0.021 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2801 1.064 1.993 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 392 5.336 7.500 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 54 43.324 24.815 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 288 11.346 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 8 13.615 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 257 0.082 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1984 0.004 0.021 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 977 0.669 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1588 1.262 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 656 1.932 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 615 3.360 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.800 _refine_ls_shell.d_res_low 1.847 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 75.4 _refine_ls_shell.number_reflns_R_work 1162 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.239 _refine_ls_shell.R_factor_R_free 0.314 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 59 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1221 _refine_ls_shell.number_reflns_obs 1162 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3KF0 _struct.title 'HIV Protease with fragment 4D9 bound' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3KF0 _struct_keywords.pdbx_keywords 'HYDROLASE/HYDROLASE INHIBITOR' _struct_keywords.text 'Protease, TL-3 inhibitor, fragment hit, Aspartyl protease, HYDROLASE-HYDROLASE INHIBITOR COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 5 ? I N N 6 ? J N N 5 ? K N N 7 ? L N N 7 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 86 ? THR A 91 ? GLY A 86 THR A 91 1 ? 6 HELX_P HELX_P2 2 GLY B 86 ? GLY B 94 ? GLY B 86 GLY B 94 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A GLY 94 O ? ? ? 1_555 H K . K ? ? A GLY 94 A K 307 1_555 ? ? ? ? ? ? ? 2.972 ? ? metalc2 metalc ? ? A THR 96 OG1 ? ? ? 1_555 H K . K ? ? A THR 96 A K 307 1_555 ? ? ? ? ? ? ? 2.978 ? ? metalc3 metalc ? ? A ASN 98 O ? ? ? 1_555 J K . K ? ? A ASN 98 B K 306 1_555 ? ? ? ? ? ? ? 2.951 ? ? metalc4 metalc ? ? H K . K ? ? ? 1_555 B ASN 98 O ? ? A K 307 B ASN 98 1_555 ? ? ? ? ? ? ? 3.195 ? ? metalc5 metalc ? ? B GLY 94 O ? ? ? 1_555 J K . K ? ? B GLY 94 B K 306 1_555 ? ? ? ? ? ? ? 2.834 ? ? metalc6 metalc ? ? B THR 96 OG1 ? ? ? 1_555 J K . K ? ? B THR 96 B K 306 1_555 ? ? ? ? ? ? ? 3.065 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 8 ? C ? 8 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? parallel B 4 5 ? anti-parallel B 5 6 ? parallel B 6 7 ? anti-parallel B 7 8 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? parallel C 4 5 ? anti-parallel C 5 6 ? parallel C 6 7 ? anti-parallel C 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 2 ? ILE A 3 ? GLN A 2 ILE A 3 A 2 THR B 96 ? ASN B 98 ? THR B 96 ASN B 98 A 3 THR A 96 ? ASN A 98 ? THR A 96 ASN A 98 A 4 GLN B 2 ? ILE B 3 ? GLN B 2 ILE B 3 B 1 LYS A 43 ? GLY A 49 ? LYS A 43 GLY A 49 B 2 GLY A 52 ? ILE A 66 ? GLY A 52 ILE A 66 B 3 HIS A 69 ? VAL A 77 ? HIS A 69 VAL A 77 B 4 VAL A 32 ? LEU A 33 ? VAL A 32 LEU A 33 B 5 ILE A 84 ? ILE A 85 ? ILE A 84 ILE A 85 B 6 GLN A 18 ? LEU A 24 ? GLN A 18 LEU A 24 B 7 LEU A 10 ? ILE A 15 ? LEU A 10 ILE A 15 B 8 GLY A 52 ? ILE A 66 ? GLY A 52 ILE A 66 C 1 LYS B 43 ? GLY B 49 ? LYS B 43 GLY B 49 C 2 GLY B 52 ? ILE B 66 ? GLY B 52 ILE B 66 C 3 HIS B 69 ? GLY B 78 ? HIS B 69 GLY B 78 C 4 VAL B 32 ? GLU B 34 ? VAL B 32 GLU B 34 C 5 ILE B 84 ? ILE B 85 ? ILE B 84 ILE B 85 C 6 GLN B 18 ? LEU B 24 ? GLN B 18 LEU B 24 C 7 LEU B 10 ? ILE B 15 ? LEU B 10 ILE B 15 C 8 GLY B 52 ? ILE B 66 ? GLY B 52 ILE B 66 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 3 ? N ILE A 3 O LEU B 97 ? O LEU B 97 A 2 3 O THR B 96 ? O THR B 96 N ASN A 98 ? N ASN A 98 A 3 4 N LEU A 97 ? N LEU A 97 O ILE B 3 ? O ILE B 3 B 1 2 N LYS A 45 ? N LYS A 45 O VAL A 56 ? O VAL A 56 B 2 3 N ILE A 66 ? N ILE A 66 O HIS A 69 ? O HIS A 69 B 3 4 O LEU A 76 ? O LEU A 76 N LEU A 33 ? N LEU A 33 B 4 5 N VAL A 32 ? N VAL A 32 O ILE A 84 ? O ILE A 84 B 5 6 O ILE A 85 ? O ILE A 85 N LEU A 23 ? N LEU A 23 B 6 7 O LYS A 20 ? O LYS A 20 N ILE A 13 ? N ILE A 13 B 7 8 N LYS A 14 ? N LYS A 14 O GLU A 65 ? O GLU A 65 C 1 2 N LYS B 43 ? N LYS B 43 O GLN B 58 ? O GLN B 58 C 2 3 N ILE B 66 ? N ILE B 66 O HIS B 69 ? O HIS B 69 C 3 4 O LEU B 76 ? O LEU B 76 N LEU B 33 ? N LEU B 33 C 4 5 N VAL B 32 ? N VAL B 32 O ILE B 84 ? O ILE B 84 C 5 6 O ILE B 85 ? O ILE B 85 N LEU B 23 ? N LEU B 23 C 6 7 O ALA B 22 ? O ALA B 22 N VAL B 11 ? N VAL B 11 C 7 8 N LYS B 14 ? N LYS B 14 O GLU B 65 ? O GLU B 65 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 3TL 200 ? 26 'BINDING SITE FOR RESIDUE 3TL A 200' AC2 Software A 4DX 201 ? 8 'BINDING SITE FOR RESIDUE 4DX A 201' AC3 Software A DMS 301 ? 5 'BINDING SITE FOR RESIDUE DMS A 301' AC4 Software A DMS 304 ? 4 'BINDING SITE FOR RESIDUE DMS A 304' AC5 Software A DMS 305 ? 6 'BINDING SITE FOR RESIDUE DMS A 305' AC6 Software A K 307 ? 3 'BINDING SITE FOR RESIDUE K A 307' AC7 Software B BME 300 ? 6 'BINDING SITE FOR RESIDUE BME B 300' AC8 Software B K 306 ? 3 'BINDING SITE FOR RESIDUE K B 306' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 26 TRP A 6 ? TRP A 6 . ? 4_556 ? 2 AC1 26 ARG A 8 ? ARG A 8 . ? 1_555 ? 3 AC1 26 ASP A 25 ? ASP A 25 . ? 1_555 ? 4 AC1 26 GLY A 27 ? GLY A 27 . ? 1_555 ? 5 AC1 26 ALA A 28 ? ALA A 28 . ? 1_555 ? 6 AC1 26 ASP A 29 ? ASP A 29 . ? 1_555 ? 7 AC1 26 GLY A 48 ? GLY A 48 . ? 1_555 ? 8 AC1 26 GLY A 49 ? GLY A 49 . ? 1_555 ? 9 AC1 26 ILE A 50 ? ILE A 50 . ? 1_555 ? 10 AC1 26 PHE A 53 ? PHE A 53 . ? 1_555 ? 11 AC1 26 PRO A 81 ? PRO A 81 . ? 1_555 ? 12 AC1 26 VAL A 82 ? VAL A 82 . ? 1_555 ? 13 AC1 26 HOH K . ? HOH A 306 . ? 1_555 ? 14 AC1 26 HOH K . ? HOH A 383 . ? 1_555 ? 15 AC1 26 ARG B 8 ? ARG B 8 . ? 1_555 ? 16 AC1 26 ASP B 25 ? ASP B 25 . ? 1_555 ? 17 AC1 26 GLY B 27 ? GLY B 27 . ? 1_555 ? 18 AC1 26 ALA B 28 ? ALA B 28 . ? 1_555 ? 19 AC1 26 ASP B 29 ? ASP B 29 . ? 1_555 ? 20 AC1 26 GLY B 48 ? GLY B 48 . ? 1_555 ? 21 AC1 26 GLY B 49 ? GLY B 49 . ? 1_555 ? 22 AC1 26 PHE B 53 ? PHE B 53 . ? 1_555 ? 23 AC1 26 PRO B 81 ? PRO B 81 . ? 1_555 ? 24 AC1 26 VAL B 82 ? VAL B 82 . ? 1_555 ? 25 AC1 26 ILE B 84 ? ILE B 84 . ? 1_555 ? 26 AC1 26 HOH L . ? HOH B 204 . ? 1_555 ? 27 AC2 8 LYS A 14 ? LYS A 14 . ? 1_555 ? 28 AC2 8 ILE A 15 ? ILE A 15 . ? 1_555 ? 29 AC2 8 GLY A 16 ? GLY A 16 . ? 1_555 ? 30 AC2 8 GLY A 17 ? GLY A 17 . ? 1_555 ? 31 AC2 8 LEU A 63 ? LEU A 63 . ? 1_555 ? 32 AC2 8 ILE A 64 ? ILE A 64 . ? 1_555 ? 33 AC2 8 GLU A 65 ? GLU A 65 . ? 1_555 ? 34 AC2 8 HOH K . ? HOH A 334 . ? 1_555 ? 35 AC3 5 THR A 12 ? THR A 12 . ? 1_555 ? 36 AC3 5 GLU A 65 ? GLU A 65 . ? 1_555 ? 37 AC3 5 ILE A 66 ? ILE A 66 . ? 1_555 ? 38 AC3 5 CYS A 67 ? CYS A 67 . ? 1_555 ? 39 AC3 5 GLY A 68 ? GLY A 68 . ? 1_555 ? 40 AC4 4 GLY A 73 ? GLY A 73 . ? 1_555 ? 41 AC4 4 THR A 74 ? THR A 74 . ? 1_555 ? 42 AC4 4 ASN A 88 ? ASN A 88 . ? 1_555 ? 43 AC4 4 ARG B 41 ? ARG B 41 . ? 3_556 ? 44 AC5 6 ARG A 87 ? ARG A 87 . ? 1_555 ? 45 AC5 6 ASN A 88 ? ASN A 88 . ? 1_555 ? 46 AC5 6 THR A 91 ? THR A 91 . ? 1_555 ? 47 AC5 6 LEU B 5 ? LEU B 5 . ? 1_555 ? 48 AC5 6 TRP B 6 ? TRP B 6 . ? 1_555 ? 49 AC5 6 ARG B 41 ? ARG B 41 . ? 3_556 ? 50 AC6 3 GLY A 94 ? GLY A 94 . ? 1_555 ? 51 AC6 3 THR A 96 ? THR A 96 . ? 1_555 ? 52 AC6 3 ASN B 98 ? ASN B 98 . ? 1_555 ? 53 AC7 6 GLN A 18 ? GLN A 18 . ? 1_556 ? 54 AC7 6 MET A 36 ? MET A 36 . ? 1_556 ? 55 AC7 6 ASN A 37 ? ASN A 37 . ? 1_556 ? 56 AC7 6 THR B 12 ? THR B 12 . ? 1_555 ? 57 AC7 6 GLU B 65 ? GLU B 65 . ? 1_555 ? 58 AC7 6 GLY B 68 ? GLY B 68 . ? 1_555 ? 59 AC8 3 ASN A 98 ? ASN A 98 . ? 1_555 ? 60 AC8 3 GLY B 94 ? GLY B 94 . ? 1_555 ? 61 AC8 3 THR B 96 ? THR B 96 . ? 1_555 ? # _atom_sites.entry_id 3KF0 _atom_sites.fract_transf_matrix[1][1] 0.016802 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011640 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021533 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C K N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 1 1 PRO PRO A . n A 1 2 GLN 2 2 2 GLN GLN A . n A 1 3 ILE 3 3 3 ILE ILE A . n A 1 4 THR 4 4 4 THR THR A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 TRP 6 6 6 TRP TRP A . n A 1 7 LYS 7 7 7 LYS LYS A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 ILE 15 15 15 ILE ILE A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 GLN 18 18 18 GLN GLN A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 LYS 20 20 20 LYS LYS A . n A 1 21 GLU 21 21 21 GLU GLU A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 ASP 25 25 25 ASP ASP A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 ASP 29 29 29 ASP ASP A . n A 1 30 ASP 30 30 30 ASP ASP A . n A 1 31 THR 31 31 31 THR THR A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 MET 36 36 36 MET MET A . n A 1 37 ASN 37 37 37 ASN ASN A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 PRO 39 39 39 PRO PRO A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 ARG 41 41 41 ARG ARG A . n A 1 42 TRP 42 42 42 TRP TRP A . n A 1 43 LYS 43 43 43 LYS LYS A . n A 1 44 PRO 44 44 44 PRO PRO A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 MET 46 46 46 MET MET A . n A 1 47 ILE 47 47 47 ILE ILE A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 ILE 50 50 50 ILE ILE A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 GLY 52 52 52 GLY GLY A . n A 1 53 PHE 53 53 53 PHE PHE A . n A 1 54 ILE 54 54 54 ILE ILE A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 ARG 57 57 57 ARG ARG A . n A 1 58 GLN 58 58 58 GLN GLN A . n A 1 59 TYR 59 59 59 TYR TYR A . n A 1 60 ASP 60 60 60 ASP ASP A . n A 1 61 GLN 61 61 61 GLN GLN A . n A 1 62 ILE 62 62 62 ILE ILE A . n A 1 63 LEU 63 63 63 LEU LEU A . n A 1 64 ILE 64 64 64 ILE ILE A . n A 1 65 GLU 65 65 65 GLU GLU A . n A 1 66 ILE 66 66 66 ILE ILE A . n A 1 67 CYS 67 67 67 CYS CYS A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 HIS 69 69 69 HIS HIS A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 THR 74 74 74 THR THR A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 GLY 78 78 78 GLY GLY A . n A 1 79 PRO 79 79 79 PRO PRO A . n A 1 80 THR 80 80 80 THR THR A . n A 1 81 PRO 81 81 81 PRO PRO A . n A 1 82 VAL 82 82 82 VAL VAL A . n A 1 83 ASN 83 83 83 ASN ASN A . n A 1 84 ILE 84 84 84 ILE ILE A . n A 1 85 ILE 85 85 85 ILE ILE A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 ARG 87 87 87 ARG ARG A . n A 1 88 ASN 88 88 88 ASN ASN A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 THR 91 91 91 THR THR A . n A 1 92 GLN 92 92 92 GLN GLN A . n A 1 93 ILE 93 93 93 ILE ILE A . n A 1 94 GLY 94 94 94 GLY GLY A . n A 1 95 CYS 95 95 95 CYS CYS A . n A 1 96 THR 96 96 96 THR THR A . n A 1 97 LEU 97 97 97 LEU LEU A . n A 1 98 ASN 98 98 98 ASN ASN A . n A 1 99 PHE 99 99 99 PHE PHE A . n B 1 1 PRO 1 1 1 PRO PRO B . n B 1 2 GLN 2 2 2 GLN GLN B . n B 1 3 ILE 3 3 3 ILE ILE B . n B 1 4 THR 4 4 4 THR THR B . n B 1 5 LEU 5 5 5 LEU LEU B . n B 1 6 TRP 6 6 6 TRP TRP B . n B 1 7 LYS 7 7 7 LYS LYS B . n B 1 8 ARG 8 8 8 ARG ARG B . n B 1 9 PRO 9 9 9 PRO PRO B . n B 1 10 LEU 10 10 10 LEU LEU B . n B 1 11 VAL 11 11 11 VAL VAL B . n B 1 12 THR 12 12 12 THR THR B . n B 1 13 ILE 13 13 13 ILE ILE B . n B 1 14 LYS 14 14 14 LYS LYS B . n B 1 15 ILE 15 15 15 ILE ILE B . n B 1 16 GLY 16 16 16 GLY GLY B . n B 1 17 GLY 17 17 17 GLY GLY B . n B 1 18 GLN 18 18 18 GLN GLN B . n B 1 19 LEU 19 19 19 LEU LEU B . n B 1 20 LYS 20 20 20 LYS LYS B . n B 1 21 GLU 21 21 21 GLU GLU B . n B 1 22 ALA 22 22 22 ALA ALA B . n B 1 23 LEU 23 23 23 LEU LEU B . n B 1 24 LEU 24 24 24 LEU LEU B . n B 1 25 ASP 25 25 25 ASP ASP B . n B 1 26 THR 26 26 26 THR THR B . n B 1 27 GLY 27 27 27 GLY GLY B . n B 1 28 ALA 28 28 28 ALA ALA B . n B 1 29 ASP 29 29 29 ASP ASP B . n B 1 30 ASP 30 30 30 ASP ASP B . n B 1 31 THR 31 31 31 THR THR B . n B 1 32 VAL 32 32 32 VAL VAL B . n B 1 33 LEU 33 33 33 LEU LEU B . n B 1 34 GLU 34 34 34 GLU GLU B . n B 1 35 GLU 35 35 35 GLU GLU B . n B 1 36 MET 36 36 36 MET MET B . n B 1 37 ASN 37 37 37 ASN ASN B . n B 1 38 LEU 38 38 38 LEU LEU B . n B 1 39 PRO 39 39 39 PRO PRO B . n B 1 40 GLY 40 40 40 GLY GLY B . n B 1 41 ARG 41 41 41 ARG ARG B . n B 1 42 TRP 42 42 42 TRP TRP B . n B 1 43 LYS 43 43 43 LYS LYS B . n B 1 44 PRO 44 44 44 PRO PRO B . n B 1 45 LYS 45 45 45 LYS LYS B . n B 1 46 MET 46 46 46 MET MET B . n B 1 47 ILE 47 47 47 ILE ILE B . n B 1 48 GLY 48 48 48 GLY GLY B . n B 1 49 GLY 49 49 49 GLY GLY B . n B 1 50 ILE 50 50 50 ILE ILE B . n B 1 51 GLY 51 51 51 GLY GLY B . n B 1 52 GLY 52 52 52 GLY GLY B . n B 1 53 PHE 53 53 53 PHE PHE B . n B 1 54 ILE 54 54 54 ILE ILE B . n B 1 55 LYS 55 55 55 LYS LYS B . n B 1 56 VAL 56 56 56 VAL VAL B . n B 1 57 ARG 57 57 57 ARG ARG B . n B 1 58 GLN 58 58 58 GLN GLN B . n B 1 59 TYR 59 59 59 TYR TYR B . n B 1 60 ASP 60 60 60 ASP ASP B . n B 1 61 GLN 61 61 61 GLN GLN B . n B 1 62 ILE 62 62 62 ILE ILE B . n B 1 63 LEU 63 63 63 LEU LEU B . n B 1 64 ILE 64 64 64 ILE ILE B . n B 1 65 GLU 65 65 65 GLU GLU B . n B 1 66 ILE 66 66 66 ILE ILE B . n B 1 67 CYS 67 67 67 CYS CYS B . n B 1 68 GLY 68 68 68 GLY GLY B . n B 1 69 HIS 69 69 69 HIS HIS B . n B 1 70 LYS 70 70 70 LYS LYS B . n B 1 71 ALA 71 71 71 ALA ALA B . n B 1 72 ILE 72 72 72 ILE ILE B . n B 1 73 GLY 73 73 73 GLY GLY B . n B 1 74 THR 74 74 74 THR THR B . n B 1 75 VAL 75 75 75 VAL VAL B . n B 1 76 LEU 76 76 76 LEU LEU B . n B 1 77 VAL 77 77 77 VAL VAL B . n B 1 78 GLY 78 78 78 GLY GLY B . n B 1 79 PRO 79 79 79 PRO PRO B . n B 1 80 THR 80 80 80 THR THR B . n B 1 81 PRO 81 81 81 PRO PRO B . n B 1 82 VAL 82 82 82 VAL VAL B . n B 1 83 ASN 83 83 83 ASN ASN B . n B 1 84 ILE 84 84 84 ILE ILE B . n B 1 85 ILE 85 85 85 ILE ILE B . n B 1 86 GLY 86 86 86 GLY GLY B . n B 1 87 ARG 87 87 87 ARG ARG B . n B 1 88 ASN 88 88 88 ASN ASN B . n B 1 89 LEU 89 89 89 LEU LEU B . n B 1 90 LEU 90 90 90 LEU LEU B . n B 1 91 THR 91 91 91 THR THR B . n B 1 92 GLN 92 92 92 GLN GLN B . n B 1 93 ILE 93 93 93 ILE ILE B . n B 1 94 GLY 94 94 94 GLY GLY B . n B 1 95 CYS 95 95 95 CYS CYS B . n B 1 96 THR 96 96 96 THR THR B . n B 1 97 LEU 97 97 97 LEU LEU B . n B 1 98 ASN 98 98 98 ASN ASN B . n B 1 99 PHE 99 99 99 PHE PHE B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 3TL 1 200 200 3TL 3TL A . D 3 4DX 1 201 201 4DX 4DX A . E 4 DMS 1 301 301 DMS DMS A . F 4 DMS 1 304 304 DMS DMS A . G 4 DMS 1 305 305 DMS DMS A . H 5 K 1 307 307 K K A . I 6 BME 1 300 300 BME BME B . J 5 K 1 306 306 K K B . K 7 HOH 1 206 206 HOH HOH A . K 7 HOH 2 207 207 HOH HOH A . K 7 HOH 3 208 337 HOH HOH A . K 7 HOH 4 210 210 HOH HOH A . K 7 HOH 5 211 211 HOH HOH A . K 7 HOH 6 215 215 HOH HOH A . K 7 HOH 7 221 221 HOH HOH A . K 7 HOH 8 230 230 HOH HOH A . K 7 HOH 9 231 231 HOH HOH A . K 7 HOH 10 236 236 HOH HOH A . K 7 HOH 11 237 237 HOH HOH A . K 7 HOH 12 244 244 HOH HOH A . K 7 HOH 13 248 248 HOH HOH A . K 7 HOH 14 250 250 HOH HOH A . K 7 HOH 15 251 251 HOH HOH A . K 7 HOH 16 253 253 HOH HOH A . K 7 HOH 17 256 256 HOH HOH A . K 7 HOH 18 260 260 HOH HOH A . K 7 HOH 19 262 262 HOH HOH A . K 7 HOH 20 263 263 HOH HOH A . K 7 HOH 21 264 264 HOH HOH A . K 7 HOH 22 270 270 HOH HOH A . K 7 HOH 23 271 271 HOH HOH A . K 7 HOH 24 274 274 HOH HOH A . K 7 HOH 25 279 279 HOH HOH A . K 7 HOH 26 281 281 HOH HOH A . K 7 HOH 27 284 284 HOH HOH A . K 7 HOH 28 286 286 HOH HOH A . K 7 HOH 29 287 287 HOH HOH A . K 7 HOH 30 288 288 HOH HOH A . K 7 HOH 31 289 289 HOH HOH A . K 7 HOH 32 292 292 HOH HOH A . K 7 HOH 33 294 294 HOH HOH A . K 7 HOH 34 296 296 HOH HOH A . K 7 HOH 35 300 300 HOH HOH A . K 7 HOH 36 306 306 HOH HOH A . K 7 HOH 37 308 308 HOH HOH A . K 7 HOH 38 318 318 HOH HOH A . K 7 HOH 39 319 319 HOH HOH A . K 7 HOH 40 320 320 HOH HOH A . K 7 HOH 41 321 321 HOH HOH A . K 7 HOH 42 324 324 HOH HOH A . K 7 HOH 43 333 333 HOH HOH A . K 7 HOH 44 334 334 HOH HOH A . K 7 HOH 45 335 335 HOH HOH A . K 7 HOH 46 336 336 HOH HOH A . K 7 HOH 47 337 305 HOH HOH A . K 7 HOH 48 339 339 HOH HOH A . K 7 HOH 49 342 342 HOH HOH A . K 7 HOH 50 346 346 HOH HOH A . K 7 HOH 51 347 347 HOH HOH A . K 7 HOH 52 349 349 HOH HOH A . K 7 HOH 53 350 350 HOH HOH A . K 7 HOH 54 351 351 HOH HOH A . K 7 HOH 55 352 352 HOH HOH A . K 7 HOH 56 354 354 HOH HOH A . K 7 HOH 57 356 356 HOH HOH A . K 7 HOH 58 361 361 HOH HOH A . K 7 HOH 59 362 362 HOH HOH A . K 7 HOH 60 363 363 HOH HOH A . K 7 HOH 61 364 364 HOH HOH A . K 7 HOH 62 365 365 HOH HOH A . K 7 HOH 63 366 366 HOH HOH A . K 7 HOH 64 368 368 HOH HOH A . K 7 HOH 65 370 370 HOH HOH A . K 7 HOH 66 373 373 HOH HOH A . K 7 HOH 67 374 374 HOH HOH A . K 7 HOH 68 376 376 HOH HOH A . K 7 HOH 69 379 379 HOH HOH A . K 7 HOH 70 383 383 HOH HOH A . K 7 HOH 71 385 385 HOH HOH A . K 7 HOH 72 388 388 HOH HOH A . K 7 HOH 73 392 392 HOH HOH A . K 7 HOH 74 394 394 HOH HOH A . K 7 HOH 75 396 396 HOH HOH A . K 7 HOH 76 398 398 HOH HOH A . K 7 HOH 77 399 399 HOH HOH A . K 7 HOH 78 403 403 HOH HOH A . K 7 HOH 79 405 405 HOH HOH A . K 7 HOH 80 406 406 HOH HOH A . K 7 HOH 81 409 409 HOH HOH A . K 7 HOH 82 410 410 HOH HOH A . K 7 HOH 83 411 411 HOH HOH A . K 7 HOH 84 412 412 HOH HOH A . K 7 HOH 85 413 413 HOH HOH A . K 7 HOH 86 415 415 HOH HOH A . K 7 HOH 87 416 416 HOH HOH A . K 7 HOH 88 417 417 HOH HOH A . K 7 HOH 89 418 418 HOH HOH A . K 7 HOH 90 419 419 HOH HOH A . K 7 HOH 91 420 420 HOH HOH A . K 7 HOH 92 421 421 HOH HOH A . K 7 HOH 93 423 423 HOH HOH A . K 7 HOH 94 430 430 HOH HOH A . K 7 HOH 95 432 432 HOH HOH A . K 7 HOH 96 433 433 HOH HOH A . L 7 HOH 1 201 201 HOH HOH B . L 7 HOH 2 203 203 HOH HOH B . L 7 HOH 3 204 204 HOH HOH B . L 7 HOH 4 205 205 HOH HOH B . L 7 HOH 5 208 208 HOH HOH B . L 7 HOH 6 212 212 HOH HOH B . L 7 HOH 7 213 213 HOH HOH B . L 7 HOH 8 214 214 HOH HOH B . L 7 HOH 9 218 218 HOH HOH B . L 7 HOH 10 220 220 HOH HOH B . L 7 HOH 11 223 223 HOH HOH B . L 7 HOH 12 224 224 HOH HOH B . L 7 HOH 13 225 225 HOH HOH B . L 7 HOH 14 226 226 HOH HOH B . L 7 HOH 15 227 227 HOH HOH B . L 7 HOH 16 232 232 HOH HOH B . L 7 HOH 17 233 233 HOH HOH B . L 7 HOH 18 234 234 HOH HOH B . L 7 HOH 19 235 235 HOH HOH B . L 7 HOH 20 238 238 HOH HOH B . L 7 HOH 21 239 239 HOH HOH B . L 7 HOH 22 240 240 HOH HOH B . L 7 HOH 23 242 242 HOH HOH B . L 7 HOH 24 243 243 HOH HOH B . L 7 HOH 25 245 245 HOH HOH B . L 7 HOH 26 246 246 HOH HOH B . L 7 HOH 27 247 247 HOH HOH B . L 7 HOH 28 249 249 HOH HOH B . L 7 HOH 29 254 254 HOH HOH B . L 7 HOH 30 257 257 HOH HOH B . L 7 HOH 31 258 258 HOH HOH B . L 7 HOH 32 259 259 HOH HOH B . L 7 HOH 33 265 265 HOH HOH B . L 7 HOH 34 266 266 HOH HOH B . L 7 HOH 35 267 267 HOH HOH B . L 7 HOH 36 269 269 HOH HOH B . L 7 HOH 37 272 272 HOH HOH B . L 7 HOH 38 273 273 HOH HOH B . L 7 HOH 39 277 277 HOH HOH B . L 7 HOH 40 278 278 HOH HOH B . L 7 HOH 41 280 280 HOH HOH B . L 7 HOH 42 282 282 HOH HOH B . L 7 HOH 43 283 283 HOH HOH B . L 7 HOH 44 285 285 HOH HOH B . L 7 HOH 45 290 290 HOH HOH B . L 7 HOH 46 291 291 HOH HOH B . L 7 HOH 47 293 293 HOH HOH B . L 7 HOH 48 297 297 HOH HOH B . L 7 HOH 49 298 298 HOH HOH B . L 7 HOH 50 299 299 HOH HOH B . L 7 HOH 51 301 301 HOH HOH B . L 7 HOH 52 303 303 HOH HOH B . L 7 HOH 53 304 304 HOH HOH B . L 7 HOH 54 307 307 HOH HOH B . L 7 HOH 55 309 309 HOH HOH B . L 7 HOH 56 310 310 HOH HOH B . L 7 HOH 57 311 311 HOH HOH B . L 7 HOH 58 313 313 HOH HOH B . L 7 HOH 59 322 322 HOH HOH B . L 7 HOH 60 323 323 HOH HOH B . L 7 HOH 61 325 325 HOH HOH B . L 7 HOH 62 326 326 HOH HOH B . L 7 HOH 63 327 327 HOH HOH B . L 7 HOH 64 328 328 HOH HOH B . L 7 HOH 65 329 329 HOH HOH B . L 7 HOH 66 330 330 HOH HOH B . L 7 HOH 67 331 331 HOH HOH B . L 7 HOH 68 332 332 HOH HOH B . L 7 HOH 69 338 338 HOH HOH B . L 7 HOH 70 340 340 HOH HOH B . L 7 HOH 71 341 341 HOH HOH B . L 7 HOH 72 343 343 HOH HOH B . L 7 HOH 73 344 344 HOH HOH B . L 7 HOH 74 345 345 HOH HOH B . L 7 HOH 75 348 348 HOH HOH B . L 7 HOH 76 353 353 HOH HOH B . L 7 HOH 77 355 355 HOH HOH B . L 7 HOH 78 357 357 HOH HOH B . L 7 HOH 79 358 358 HOH HOH B . L 7 HOH 80 359 359 HOH HOH B . L 7 HOH 81 360 360 HOH HOH B . L 7 HOH 82 367 367 HOH HOH B . L 7 HOH 83 369 369 HOH HOH B . L 7 HOH 84 371 371 HOH HOH B . L 7 HOH 85 372 372 HOH HOH B . L 7 HOH 86 375 375 HOH HOH B . L 7 HOH 87 377 377 HOH HOH B . L 7 HOH 88 378 378 HOH HOH B . L 7 HOH 89 380 380 HOH HOH B . L 7 HOH 90 381 381 HOH HOH B . L 7 HOH 91 382 382 HOH HOH B . L 7 HOH 92 384 384 HOH HOH B . L 7 HOH 93 386 386 HOH HOH B . L 7 HOH 94 387 387 HOH HOH B . L 7 HOH 95 389 389 HOH HOH B . L 7 HOH 96 390 390 HOH HOH B . L 7 HOH 97 391 391 HOH HOH B . L 7 HOH 98 393 393 HOH HOH B . L 7 HOH 99 395 395 HOH HOH B . L 7 HOH 100 397 397 HOH HOH B . L 7 HOH 101 400 400 HOH HOH B . L 7 HOH 102 401 401 HOH HOH B . L 7 HOH 103 402 402 HOH HOH B . L 7 HOH 104 404 404 HOH HOH B . L 7 HOH 105 407 407 HOH HOH B . L 7 HOH 106 408 408 HOH HOH B . L 7 HOH 107 414 414 HOH HOH B . L 7 HOH 108 422 422 HOH HOH B . L 7 HOH 109 424 424 HOH HOH B . L 7 HOH 110 425 425 HOH HOH B . L 7 HOH 111 426 426 HOH HOH B . L 7 HOH 112 427 427 HOH HOH B . L 7 HOH 113 428 428 HOH HOH B . L 7 HOH 114 429 429 HOH HOH B . L 7 HOH 115 431 431 HOH HOH B . # _pdbx_molecule_features.prd_id PRD_000434 _pdbx_molecule_features.name 'N-[(benzyloxy)carbonyl]-L-alanyl-N-[(1R)-1-benzyl-2-oxoethyl]-L-valinamide' _pdbx_molecule_features.type Peptide-like _pdbx_molecule_features.class Inhibitor _pdbx_molecule_features.details ? # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_000434 _pdbx_molecule.asym_id C # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3540 ? 1 MORE -24 ? 1 'SSA (A^2)' 10130 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 349 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id K _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A GLY 94 ? A GLY 94 ? 1_555 K ? H K . ? A K 307 ? 1_555 OG1 ? A THR 96 ? A THR 96 ? 1_555 101.5 ? 2 O ? A GLY 94 ? A GLY 94 ? 1_555 K ? H K . ? A K 307 ? 1_555 O ? B ASN 98 ? B ASN 98 ? 1_555 66.9 ? 3 OG1 ? A THR 96 ? A THR 96 ? 1_555 K ? H K . ? A K 307 ? 1_555 O ? B ASN 98 ? B ASN 98 ? 1_555 74.3 ? 4 O ? A ASN 98 ? A ASN 98 ? 1_555 K ? J K . ? B K 306 ? 1_555 O ? B GLY 94 ? B GLY 94 ? 1_555 74.1 ? 5 O ? A ASN 98 ? A ASN 98 ? 1_555 K ? J K . ? B K 306 ? 1_555 OG1 ? B THR 96 ? B THR 96 ? 1_555 76.5 ? 6 O ? B GLY 94 ? B GLY 94 ? 1_555 K ? J K . ? B K 306 ? 1_555 OG1 ? B THR 96 ? B THR 96 ? 1_555 108.3 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-02-23 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2013-02-27 4 'Structure model' 1 3 2021-10-13 5 'Structure model' 1 4 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Atomic model' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Non-polymer description' 5 2 'Structure model' 'Structure summary' 6 2 'Structure model' 'Version format compliance' 7 3 'Structure model' Other 8 4 'Structure model' 'Database references' 9 4 'Structure model' 'Derived calculations' 10 5 'Structure model' 'Data collection' 11 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' struct_conn 3 4 'Structure model' struct_ref_seq_dif 4 4 'Structure model' struct_site 5 5 'Structure model' chem_comp_atom 6 5 'Structure model' chem_comp_bond 7 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_dist_value' 4 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 5 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 6 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 7 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 8 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 9 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 10 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 11 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 12 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 13 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 14 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 15 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 16 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 17 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 18 4 'Structure model' '_struct_ref_seq_dif.details' 19 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 20 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 21 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 REFMAC 5.5.0090 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 2 PDB_EXTRACT 3.005 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 Blu-Ice . ? ? ? ? 'data collection' ? ? ? 4 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 5 SCALA . ? ? ? ? 'data scaling' ? ? ? 6 MOLREP . ? ? ? ? phasing ? ? ? # _pdbx_entry_details.entry_id 3KF0 _pdbx_entry_details.nonpolymer_details 'THE INHIBITOR IS A C2 SYMMETRIC HIV PROTEASE' _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id GLU _pdbx_validate_torsion.auth_asym_id B _pdbx_validate_torsion.auth_seq_id 35 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -37.53 _pdbx_validate_torsion.psi 126.92 # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 C18 ? A 3TL 200 ? PLANAR . 2 1 C2 ? A 3TL 200 ? PLANAR . 3 1 C68 ? A 3TL 200 ? PLANAR . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 3TL C31 C N N 1 3TL O8 O N N 2 3TL O9 O N N 3 3TL CA C N N 4 3TL C C Y N 5 3TL C13 C Y N 6 3TL C14 C Y N 7 3TL C15 C Y N 8 3TL C16 C Y N 9 3TL C17 C Y N 10 3TL N4 N N N 11 3TL C18 C N S 12 3TL C19 C N N 13 3TL O4 O N N 14 3TL C20 C N N 15 3TL N2 N N N 16 3TL C10 C N S 17 3TL C11 C N N 18 3TL O2 O N N 19 3TL C12 C N N 20 3TL CG2 C N N 21 3TL CG1 C N N 22 3TL C2 C N R 23 3TL O1 O N N 24 3TL C1 C N S 25 3TL N1 N N N 26 3TL C3 C N N 27 3TL C4 C Y N 28 3TL C5 C Y N 29 3TL C9 C Y N 30 3TL C6 C Y N 31 3TL C8 C Y N 32 3TL C7 C Y N 33 3TL N51 N N N 34 3TL C51 C N S 35 3TL C52 C N R 36 3TL O51 O N N 37 3TL C53 C N N 38 3TL C54 C Y N 39 3TL C55 C Y N 40 3TL C59 C Y N 41 3TL C56 C Y N 42 3TL C58 C Y N 43 3TL C57 C Y N 44 3TL N52 N N N 45 3TL C60 C N S 46 3TL C61 C N N 47 3TL O52 O N N 48 3TL C62 C N N 49 3TL CG6 C N N 50 3TL CG5 C N N 51 3TL N54 N N N 52 3TL C68 C N S 53 3TL C69 C N N 54 3TL O54 O N N 55 3TL C70 C N N 56 3TL C81 C N N 57 3TL O58 O N N 58 3TL O59 O N N 59 3TL CA5 C N N 60 3TL C50 C Y N 61 3TL C63 C Y N 62 3TL C64 C Y N 63 3TL C65 C Y N 64 3TL C66 C Y N 65 3TL C67 C Y N 66 3TL HA1 H N N 67 3TL HA2 H N N 68 3TL H13 H N N 69 3TL H14 H N N 70 3TL H15 H N N 71 3TL H16 H N N 72 3TL H17 H N N 73 3TL HN4 H N N 74 3TL H18 H N N 75 3TL H201 H N N 76 3TL H202 H N N 77 3TL H203 H N N 78 3TL HN2 H N N 79 3TL H10 H N N 80 3TL H12 H N N 81 3TL HG21 H N N 82 3TL HG22 H N N 83 3TL HG23 H N N 84 3TL HG11 H N N 85 3TL HG12 H N N 86 3TL HG13 H N N 87 3TL H2 H N N 88 3TL HO1 H N N 89 3TL H1 H N N 90 3TL HN1 H N N 91 3TL H31 H N N 92 3TL H32 H N N 93 3TL H5 H N N 94 3TL H9 H N N 95 3TL H6 H N N 96 3TL H8 H N N 97 3TL H7 H N N 98 3TL HN51 H N N 99 3TL H51 H N N 100 3TL H52 H N N 101 3TL HO51 H N N 102 3TL H531 H N N 103 3TL H532 H N N 104 3TL H55 H N N 105 3TL H59 H N N 106 3TL H56 H N N 107 3TL H58 H N N 108 3TL H57 H N N 109 3TL HN52 H N N 110 3TL H60 H N N 111 3TL H62 H N N 112 3TL HG61 H N N 113 3TL HG62 H N N 114 3TL HG63 H N N 115 3TL HG51 H N N 116 3TL HG52 H N N 117 3TL HG53 H N N 118 3TL HN54 H N N 119 3TL H68 H N N 120 3TL H701 H N N 121 3TL H702 H N N 122 3TL H703 H N N 123 3TL HA51 H N N 124 3TL HA52 H N N 125 3TL H63 H N N 126 3TL H64 H N N 127 3TL H65 H N N 128 3TL H66 H N N 129 3TL H67 H N N 130 4DX C1 C N N 131 4DX C2 C N S 132 4DX C3 C N N 133 4DX C4 C N N 134 4DX C5 C N N 135 4DX C6 C N N 136 4DX C7 C N S 137 4DX O8 O N N 138 4DX H1 H N N 139 4DX H1A H N N 140 4DX H1B H N N 141 4DX H2 H N N 142 4DX H3 H N N 143 4DX H3A H N N 144 4DX H4 H N N 145 4DX H4A H N N 146 4DX H5 H N N 147 4DX H5A H N N 148 4DX H6 H N N 149 4DX H6A H N N 150 4DX H7 H N N 151 4DX HO8 H N N 152 ALA N N N N 153 ALA CA C N S 154 ALA C C N N 155 ALA O O N N 156 ALA CB C N N 157 ALA OXT O N N 158 ALA H H N N 159 ALA H2 H N N 160 ALA HA H N N 161 ALA HB1 H N N 162 ALA HB2 H N N 163 ALA HB3 H N N 164 ALA HXT H N N 165 ARG N N N N 166 ARG CA C N S 167 ARG C C N N 168 ARG O O N N 169 ARG CB C N N 170 ARG CG C N N 171 ARG CD C N N 172 ARG NE N N N 173 ARG CZ C N N 174 ARG NH1 N N N 175 ARG NH2 N N N 176 ARG OXT O N N 177 ARG H H N N 178 ARG H2 H N N 179 ARG HA H N N 180 ARG HB2 H N N 181 ARG HB3 H N N 182 ARG HG2 H N N 183 ARG HG3 H N N 184 ARG HD2 H N N 185 ARG HD3 H N N 186 ARG HE H N N 187 ARG HH11 H N N 188 ARG HH12 H N N 189 ARG HH21 H N N 190 ARG HH22 H N N 191 ARG HXT H N N 192 ASN N N N N 193 ASN CA C N S 194 ASN C C N N 195 ASN O O N N 196 ASN CB C N N 197 ASN CG C N N 198 ASN OD1 O N N 199 ASN ND2 N N N 200 ASN OXT O N N 201 ASN H H N N 202 ASN H2 H N N 203 ASN HA H N N 204 ASN HB2 H N N 205 ASN HB3 H N N 206 ASN HD21 H N N 207 ASN HD22 H N N 208 ASN HXT H N N 209 ASP N N N N 210 ASP CA C N S 211 ASP C C N N 212 ASP O O N N 213 ASP CB C N N 214 ASP CG C N N 215 ASP OD1 O N N 216 ASP OD2 O N N 217 ASP OXT O N N 218 ASP H H N N 219 ASP H2 H N N 220 ASP HA H N N 221 ASP HB2 H N N 222 ASP HB3 H N N 223 ASP HD2 H N N 224 ASP HXT H N N 225 BME C1 C N N 226 BME C2 C N N 227 BME O1 O N N 228 BME S2 S N N 229 BME H11 H N N 230 BME H12 H N N 231 BME H21 H N N 232 BME H22 H N N 233 BME HO1 H N N 234 BME HS2 H N N 235 CYS N N N N 236 CYS CA C N R 237 CYS C C N N 238 CYS O O N N 239 CYS CB C N N 240 CYS SG S N N 241 CYS OXT O N N 242 CYS H H N N 243 CYS H2 H N N 244 CYS HA H N N 245 CYS HB2 H N N 246 CYS HB3 H N N 247 CYS HG H N N 248 CYS HXT H N N 249 DMS S S N N 250 DMS O O N N 251 DMS C1 C N N 252 DMS C2 C N N 253 DMS H11 H N N 254 DMS H12 H N N 255 DMS H13 H N N 256 DMS H21 H N N 257 DMS H22 H N N 258 DMS H23 H N N 259 GLN N N N N 260 GLN CA C N S 261 GLN C C N N 262 GLN O O N N 263 GLN CB C N N 264 GLN CG C N N 265 GLN CD C N N 266 GLN OE1 O N N 267 GLN NE2 N N N 268 GLN OXT O N N 269 GLN H H N N 270 GLN H2 H N N 271 GLN HA H N N 272 GLN HB2 H N N 273 GLN HB3 H N N 274 GLN HG2 H N N 275 GLN HG3 H N N 276 GLN HE21 H N N 277 GLN HE22 H N N 278 GLN HXT H N N 279 GLU N N N N 280 GLU CA C N S 281 GLU C C N N 282 GLU O O N N 283 GLU CB C N N 284 GLU CG C N N 285 GLU CD C N N 286 GLU OE1 O N N 287 GLU OE2 O N N 288 GLU OXT O N N 289 GLU H H N N 290 GLU H2 H N N 291 GLU HA H N N 292 GLU HB2 H N N 293 GLU HB3 H N N 294 GLU HG2 H N N 295 GLU HG3 H N N 296 GLU HE2 H N N 297 GLU HXT H N N 298 GLY N N N N 299 GLY CA C N N 300 GLY C C N N 301 GLY O O N N 302 GLY OXT O N N 303 GLY H H N N 304 GLY H2 H N N 305 GLY HA2 H N N 306 GLY HA3 H N N 307 GLY HXT H N N 308 HIS N N N N 309 HIS CA C N S 310 HIS C C N N 311 HIS O O N N 312 HIS CB C N N 313 HIS CG C Y N 314 HIS ND1 N Y N 315 HIS CD2 C Y N 316 HIS CE1 C Y N 317 HIS NE2 N Y N 318 HIS OXT O N N 319 HIS H H N N 320 HIS H2 H N N 321 HIS HA H N N 322 HIS HB2 H N N 323 HIS HB3 H N N 324 HIS HD1 H N N 325 HIS HD2 H N N 326 HIS HE1 H N N 327 HIS HE2 H N N 328 HIS HXT H N N 329 HOH O O N N 330 HOH H1 H N N 331 HOH H2 H N N 332 ILE N N N N 333 ILE CA C N S 334 ILE C C N N 335 ILE O O N N 336 ILE CB C N S 337 ILE CG1 C N N 338 ILE CG2 C N N 339 ILE CD1 C N N 340 ILE OXT O N N 341 ILE H H N N 342 ILE H2 H N N 343 ILE HA H N N 344 ILE HB H N N 345 ILE HG12 H N N 346 ILE HG13 H N N 347 ILE HG21 H N N 348 ILE HG22 H N N 349 ILE HG23 H N N 350 ILE HD11 H N N 351 ILE HD12 H N N 352 ILE HD13 H N N 353 ILE HXT H N N 354 K K K N N 355 LEU N N N N 356 LEU CA C N S 357 LEU C C N N 358 LEU O O N N 359 LEU CB C N N 360 LEU CG C N N 361 LEU CD1 C N N 362 LEU CD2 C N N 363 LEU OXT O N N 364 LEU H H N N 365 LEU H2 H N N 366 LEU HA H N N 367 LEU HB2 H N N 368 LEU HB3 H N N 369 LEU HG H N N 370 LEU HD11 H N N 371 LEU HD12 H N N 372 LEU HD13 H N N 373 LEU HD21 H N N 374 LEU HD22 H N N 375 LEU HD23 H N N 376 LEU HXT H N N 377 LYS N N N N 378 LYS CA C N S 379 LYS C C N N 380 LYS O O N N 381 LYS CB C N N 382 LYS CG C N N 383 LYS CD C N N 384 LYS CE C N N 385 LYS NZ N N N 386 LYS OXT O N N 387 LYS H H N N 388 LYS H2 H N N 389 LYS HA H N N 390 LYS HB2 H N N 391 LYS HB3 H N N 392 LYS HG2 H N N 393 LYS HG3 H N N 394 LYS HD2 H N N 395 LYS HD3 H N N 396 LYS HE2 H N N 397 LYS HE3 H N N 398 LYS HZ1 H N N 399 LYS HZ2 H N N 400 LYS HZ3 H N N 401 LYS HXT H N N 402 MET N N N N 403 MET CA C N S 404 MET C C N N 405 MET O O N N 406 MET CB C N N 407 MET CG C N N 408 MET SD S N N 409 MET CE C N N 410 MET OXT O N N 411 MET H H N N 412 MET H2 H N N 413 MET HA H N N 414 MET HB2 H N N 415 MET HB3 H N N 416 MET HG2 H N N 417 MET HG3 H N N 418 MET HE1 H N N 419 MET HE2 H N N 420 MET HE3 H N N 421 MET HXT H N N 422 PHE N N N N 423 PHE CA C N S 424 PHE C C N N 425 PHE O O N N 426 PHE CB C N N 427 PHE CG C Y N 428 PHE CD1 C Y N 429 PHE CD2 C Y N 430 PHE CE1 C Y N 431 PHE CE2 C Y N 432 PHE CZ C Y N 433 PHE OXT O N N 434 PHE H H N N 435 PHE H2 H N N 436 PHE HA H N N 437 PHE HB2 H N N 438 PHE HB3 H N N 439 PHE HD1 H N N 440 PHE HD2 H N N 441 PHE HE1 H N N 442 PHE HE2 H N N 443 PHE HZ H N N 444 PHE HXT H N N 445 PRO N N N N 446 PRO CA C N S 447 PRO C C N N 448 PRO O O N N 449 PRO CB C N N 450 PRO CG C N N 451 PRO CD C N N 452 PRO OXT O N N 453 PRO H H N N 454 PRO HA H N N 455 PRO HB2 H N N 456 PRO HB3 H N N 457 PRO HG2 H N N 458 PRO HG3 H N N 459 PRO HD2 H N N 460 PRO HD3 H N N 461 PRO HXT H N N 462 THR N N N N 463 THR CA C N S 464 THR C C N N 465 THR O O N N 466 THR CB C N R 467 THR OG1 O N N 468 THR CG2 C N N 469 THR OXT O N N 470 THR H H N N 471 THR H2 H N N 472 THR HA H N N 473 THR HB H N N 474 THR HG1 H N N 475 THR HG21 H N N 476 THR HG22 H N N 477 THR HG23 H N N 478 THR HXT H N N 479 TRP N N N N 480 TRP CA C N S 481 TRP C C N N 482 TRP O O N N 483 TRP CB C N N 484 TRP CG C Y N 485 TRP CD1 C Y N 486 TRP CD2 C Y N 487 TRP NE1 N Y N 488 TRP CE2 C Y N 489 TRP CE3 C Y N 490 TRP CZ2 C Y N 491 TRP CZ3 C Y N 492 TRP CH2 C Y N 493 TRP OXT O N N 494 TRP H H N N 495 TRP H2 H N N 496 TRP HA H N N 497 TRP HB2 H N N 498 TRP HB3 H N N 499 TRP HD1 H N N 500 TRP HE1 H N N 501 TRP HE3 H N N 502 TRP HZ2 H N N 503 TRP HZ3 H N N 504 TRP HH2 H N N 505 TRP HXT H N N 506 TYR N N N N 507 TYR CA C N S 508 TYR C C N N 509 TYR O O N N 510 TYR CB C N N 511 TYR CG C Y N 512 TYR CD1 C Y N 513 TYR CD2 C Y N 514 TYR CE1 C Y N 515 TYR CE2 C Y N 516 TYR CZ C Y N 517 TYR OH O N N 518 TYR OXT O N N 519 TYR H H N N 520 TYR H2 H N N 521 TYR HA H N N 522 TYR HB2 H N N 523 TYR HB3 H N N 524 TYR HD1 H N N 525 TYR HD2 H N N 526 TYR HE1 H N N 527 TYR HE2 H N N 528 TYR HH H N N 529 TYR HXT H N N 530 VAL N N N N 531 VAL CA C N S 532 VAL C C N N 533 VAL O O N N 534 VAL CB C N N 535 VAL CG1 C N N 536 VAL CG2 C N N 537 VAL OXT O N N 538 VAL H H N N 539 VAL H2 H N N 540 VAL HA H N N 541 VAL HB H N N 542 VAL HG11 H N N 543 VAL HG12 H N N 544 VAL HG13 H N N 545 VAL HG21 H N N 546 VAL HG22 H N N 547 VAL HG23 H N N 548 VAL HXT H N N 549 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3TL C31 O8 doub N N 1 3TL C31 O9 sing N N 2 3TL C31 N4 sing N N 3 3TL O9 CA sing N N 4 3TL CA C sing N N 5 3TL CA HA1 sing N N 6 3TL CA HA2 sing N N 7 3TL C C13 doub Y N 8 3TL C C17 sing Y N 9 3TL C13 C14 sing Y N 10 3TL C13 H13 sing N N 11 3TL C14 C15 doub Y N 12 3TL C14 H14 sing N N 13 3TL C15 C16 sing Y N 14 3TL C15 H15 sing N N 15 3TL C16 C17 doub Y N 16 3TL C16 H16 sing N N 17 3TL C17 H17 sing N N 18 3TL N4 C18 sing N N 19 3TL N4 HN4 sing N N 20 3TL C18 C19 sing N N 21 3TL C18 C20 sing N N 22 3TL C18 H18 sing N N 23 3TL C19 O4 doub N N 24 3TL C19 N2 sing N N 25 3TL C20 H201 sing N N 26 3TL C20 H202 sing N N 27 3TL C20 H203 sing N N 28 3TL N2 C10 sing N N 29 3TL N2 HN2 sing N N 30 3TL C10 C11 sing N N 31 3TL C10 C12 sing N N 32 3TL C10 H10 sing N N 33 3TL C11 O2 doub N N 34 3TL C11 N1 sing N N 35 3TL C12 CG2 sing N N 36 3TL C12 CG1 sing N N 37 3TL C12 H12 sing N N 38 3TL CG2 HG21 sing N N 39 3TL CG2 HG22 sing N N 40 3TL CG2 HG23 sing N N 41 3TL CG1 HG11 sing N N 42 3TL CG1 HG12 sing N N 43 3TL CG1 HG13 sing N N 44 3TL C2 O1 sing N N 45 3TL C2 C1 sing N N 46 3TL C2 H2 sing N N 47 3TL C2 C52 sing N N 48 3TL O1 HO1 sing N N 49 3TL C1 N1 sing N N 50 3TL C1 C3 sing N N 51 3TL C1 H1 sing N N 52 3TL N1 HN1 sing N N 53 3TL C3 C4 sing N N 54 3TL C3 H31 sing N N 55 3TL C3 H32 sing N N 56 3TL C4 C5 doub Y N 57 3TL C4 C9 sing Y N 58 3TL C5 C6 sing Y N 59 3TL C5 H5 sing N N 60 3TL C9 C8 doub Y N 61 3TL C9 H9 sing N N 62 3TL C6 C7 doub Y N 63 3TL C6 H6 sing N N 64 3TL C8 C7 sing Y N 65 3TL C8 H8 sing N N 66 3TL C7 H7 sing N N 67 3TL N51 C51 sing N N 68 3TL N51 HN51 sing N N 69 3TL N51 C61 sing N N 70 3TL C51 C52 sing N N 71 3TL C51 C53 sing N N 72 3TL C51 H51 sing N N 73 3TL C52 O51 sing N N 74 3TL C52 H52 sing N N 75 3TL O51 HO51 sing N N 76 3TL C53 C54 sing N N 77 3TL C53 H531 sing N N 78 3TL C53 H532 sing N N 79 3TL C54 C55 doub Y N 80 3TL C54 C59 sing Y N 81 3TL C55 C56 sing Y N 82 3TL C55 H55 sing N N 83 3TL C59 C58 doub Y N 84 3TL C59 H59 sing N N 85 3TL C56 C57 doub Y N 86 3TL C56 H56 sing N N 87 3TL C58 C57 sing Y N 88 3TL C58 H58 sing N N 89 3TL C57 H57 sing N N 90 3TL N52 C60 sing N N 91 3TL N52 HN52 sing N N 92 3TL N52 C69 sing N N 93 3TL C60 C61 sing N N 94 3TL C60 C62 sing N N 95 3TL C60 H60 sing N N 96 3TL C61 O52 doub N N 97 3TL C62 CG6 sing N N 98 3TL C62 CG5 sing N N 99 3TL C62 H62 sing N N 100 3TL CG6 HG61 sing N N 101 3TL CG6 HG62 sing N N 102 3TL CG6 HG63 sing N N 103 3TL CG5 HG51 sing N N 104 3TL CG5 HG52 sing N N 105 3TL CG5 HG53 sing N N 106 3TL N54 C68 sing N N 107 3TL N54 HN54 sing N N 108 3TL N54 C81 sing N N 109 3TL C68 C69 sing N N 110 3TL C68 C70 sing N N 111 3TL C68 H68 sing N N 112 3TL C69 O54 doub N N 113 3TL C70 H701 sing N N 114 3TL C70 H702 sing N N 115 3TL C70 H703 sing N N 116 3TL C81 O58 doub N N 117 3TL C81 O59 sing N N 118 3TL O59 CA5 sing N N 119 3TL CA5 C50 sing N N 120 3TL CA5 HA51 sing N N 121 3TL CA5 HA52 sing N N 122 3TL C50 C63 doub Y N 123 3TL C50 C67 sing Y N 124 3TL C63 C64 sing Y N 125 3TL C63 H63 sing N N 126 3TL C64 C65 doub Y N 127 3TL C64 H64 sing N N 128 3TL C65 C66 sing Y N 129 3TL C65 H65 sing N N 130 3TL C66 C67 doub Y N 131 3TL C66 H66 sing N N 132 3TL C67 H67 sing N N 133 4DX C1 C2 sing N N 134 4DX C2 C3 sing N N 135 4DX C2 C7 sing N N 136 4DX C3 C4 sing N N 137 4DX C4 C5 sing N N 138 4DX C5 C6 sing N N 139 4DX C6 C7 sing N N 140 4DX C7 O8 sing N N 141 4DX C1 H1 sing N N 142 4DX C1 H1A sing N N 143 4DX C1 H1B sing N N 144 4DX C2 H2 sing N N 145 4DX C3 H3 sing N N 146 4DX C3 H3A sing N N 147 4DX C4 H4 sing N N 148 4DX C4 H4A sing N N 149 4DX C5 H5 sing N N 150 4DX C5 H5A sing N N 151 4DX C6 H6 sing N N 152 4DX C6 H6A sing N N 153 4DX C7 H7 sing N N 154 4DX O8 HO8 sing N N 155 ALA N CA sing N N 156 ALA N H sing N N 157 ALA N H2 sing N N 158 ALA CA C sing N N 159 ALA CA CB sing N N 160 ALA CA HA sing N N 161 ALA C O doub N N 162 ALA C OXT sing N N 163 ALA CB HB1 sing N N 164 ALA CB HB2 sing N N 165 ALA CB HB3 sing N N 166 ALA OXT HXT sing N N 167 ARG N CA sing N N 168 ARG N H sing N N 169 ARG N H2 sing N N 170 ARG CA C sing N N 171 ARG CA CB sing N N 172 ARG CA HA sing N N 173 ARG C O doub N N 174 ARG C OXT sing N N 175 ARG CB CG sing N N 176 ARG CB HB2 sing N N 177 ARG CB HB3 sing N N 178 ARG CG CD sing N N 179 ARG CG HG2 sing N N 180 ARG CG HG3 sing N N 181 ARG CD NE sing N N 182 ARG CD HD2 sing N N 183 ARG CD HD3 sing N N 184 ARG NE CZ sing N N 185 ARG NE HE sing N N 186 ARG CZ NH1 sing N N 187 ARG CZ NH2 doub N N 188 ARG NH1 HH11 sing N N 189 ARG NH1 HH12 sing N N 190 ARG NH2 HH21 sing N N 191 ARG NH2 HH22 sing N N 192 ARG OXT HXT sing N N 193 ASN N CA sing N N 194 ASN N H sing N N 195 ASN N H2 sing N N 196 ASN CA C sing N N 197 ASN CA CB sing N N 198 ASN CA HA sing N N 199 ASN C O doub N N 200 ASN C OXT sing N N 201 ASN CB CG sing N N 202 ASN CB HB2 sing N N 203 ASN CB HB3 sing N N 204 ASN CG OD1 doub N N 205 ASN CG ND2 sing N N 206 ASN ND2 HD21 sing N N 207 ASN ND2 HD22 sing N N 208 ASN OXT HXT sing N N 209 ASP N CA sing N N 210 ASP N H sing N N 211 ASP N H2 sing N N 212 ASP CA C sing N N 213 ASP CA CB sing N N 214 ASP CA HA sing N N 215 ASP C O doub N N 216 ASP C OXT sing N N 217 ASP CB CG sing N N 218 ASP CB HB2 sing N N 219 ASP CB HB3 sing N N 220 ASP CG OD1 doub N N 221 ASP CG OD2 sing N N 222 ASP OD2 HD2 sing N N 223 ASP OXT HXT sing N N 224 BME C1 C2 sing N N 225 BME C1 O1 sing N N 226 BME C1 H11 sing N N 227 BME C1 H12 sing N N 228 BME C2 S2 sing N N 229 BME C2 H21 sing N N 230 BME C2 H22 sing N N 231 BME O1 HO1 sing N N 232 BME S2 HS2 sing N N 233 CYS N CA sing N N 234 CYS N H sing N N 235 CYS N H2 sing N N 236 CYS CA C sing N N 237 CYS CA CB sing N N 238 CYS CA HA sing N N 239 CYS C O doub N N 240 CYS C OXT sing N N 241 CYS CB SG sing N N 242 CYS CB HB2 sing N N 243 CYS CB HB3 sing N N 244 CYS SG HG sing N N 245 CYS OXT HXT sing N N 246 DMS S O doub N N 247 DMS S C1 sing N N 248 DMS S C2 sing N N 249 DMS C1 H11 sing N N 250 DMS C1 H12 sing N N 251 DMS C1 H13 sing N N 252 DMS C2 H21 sing N N 253 DMS C2 H22 sing N N 254 DMS C2 H23 sing N N 255 GLN N CA sing N N 256 GLN N H sing N N 257 GLN N H2 sing N N 258 GLN CA C sing N N 259 GLN CA CB sing N N 260 GLN CA HA sing N N 261 GLN C O doub N N 262 GLN C OXT sing N N 263 GLN CB CG sing N N 264 GLN CB HB2 sing N N 265 GLN CB HB3 sing N N 266 GLN CG CD sing N N 267 GLN CG HG2 sing N N 268 GLN CG HG3 sing N N 269 GLN CD OE1 doub N N 270 GLN CD NE2 sing N N 271 GLN NE2 HE21 sing N N 272 GLN NE2 HE22 sing N N 273 GLN OXT HXT sing N N 274 GLU N CA sing N N 275 GLU N H sing N N 276 GLU N H2 sing N N 277 GLU CA C sing N N 278 GLU CA CB sing N N 279 GLU CA HA sing N N 280 GLU C O doub N N 281 GLU C OXT sing N N 282 GLU CB CG sing N N 283 GLU CB HB2 sing N N 284 GLU CB HB3 sing N N 285 GLU CG CD sing N N 286 GLU CG HG2 sing N N 287 GLU CG HG3 sing N N 288 GLU CD OE1 doub N N 289 GLU CD OE2 sing N N 290 GLU OE2 HE2 sing N N 291 GLU OXT HXT sing N N 292 GLY N CA sing N N 293 GLY N H sing N N 294 GLY N H2 sing N N 295 GLY CA C sing N N 296 GLY CA HA2 sing N N 297 GLY CA HA3 sing N N 298 GLY C O doub N N 299 GLY C OXT sing N N 300 GLY OXT HXT sing N N 301 HIS N CA sing N N 302 HIS N H sing N N 303 HIS N H2 sing N N 304 HIS CA C sing N N 305 HIS CA CB sing N N 306 HIS CA HA sing N N 307 HIS C O doub N N 308 HIS C OXT sing N N 309 HIS CB CG sing N N 310 HIS CB HB2 sing N N 311 HIS CB HB3 sing N N 312 HIS CG ND1 sing Y N 313 HIS CG CD2 doub Y N 314 HIS ND1 CE1 doub Y N 315 HIS ND1 HD1 sing N N 316 HIS CD2 NE2 sing Y N 317 HIS CD2 HD2 sing N N 318 HIS CE1 NE2 sing Y N 319 HIS CE1 HE1 sing N N 320 HIS NE2 HE2 sing N N 321 HIS OXT HXT sing N N 322 HOH O H1 sing N N 323 HOH O H2 sing N N 324 ILE N CA sing N N 325 ILE N H sing N N 326 ILE N H2 sing N N 327 ILE CA C sing N N 328 ILE CA CB sing N N 329 ILE CA HA sing N N 330 ILE C O doub N N 331 ILE C OXT sing N N 332 ILE CB CG1 sing N N 333 ILE CB CG2 sing N N 334 ILE CB HB sing N N 335 ILE CG1 CD1 sing N N 336 ILE CG1 HG12 sing N N 337 ILE CG1 HG13 sing N N 338 ILE CG2 HG21 sing N N 339 ILE CG2 HG22 sing N N 340 ILE CG2 HG23 sing N N 341 ILE CD1 HD11 sing N N 342 ILE CD1 HD12 sing N N 343 ILE CD1 HD13 sing N N 344 ILE OXT HXT sing N N 345 LEU N CA sing N N 346 LEU N H sing N N 347 LEU N H2 sing N N 348 LEU CA C sing N N 349 LEU CA CB sing N N 350 LEU CA HA sing N N 351 LEU C O doub N N 352 LEU C OXT sing N N 353 LEU CB CG sing N N 354 LEU CB HB2 sing N N 355 LEU CB HB3 sing N N 356 LEU CG CD1 sing N N 357 LEU CG CD2 sing N N 358 LEU CG HG sing N N 359 LEU CD1 HD11 sing N N 360 LEU CD1 HD12 sing N N 361 LEU CD1 HD13 sing N N 362 LEU CD2 HD21 sing N N 363 LEU CD2 HD22 sing N N 364 LEU CD2 HD23 sing N N 365 LEU OXT HXT sing N N 366 LYS N CA sing N N 367 LYS N H sing N N 368 LYS N H2 sing N N 369 LYS CA C sing N N 370 LYS CA CB sing N N 371 LYS CA HA sing N N 372 LYS C O doub N N 373 LYS C OXT sing N N 374 LYS CB CG sing N N 375 LYS CB HB2 sing N N 376 LYS CB HB3 sing N N 377 LYS CG CD sing N N 378 LYS CG HG2 sing N N 379 LYS CG HG3 sing N N 380 LYS CD CE sing N N 381 LYS CD HD2 sing N N 382 LYS CD HD3 sing N N 383 LYS CE NZ sing N N 384 LYS CE HE2 sing N N 385 LYS CE HE3 sing N N 386 LYS NZ HZ1 sing N N 387 LYS NZ HZ2 sing N N 388 LYS NZ HZ3 sing N N 389 LYS OXT HXT sing N N 390 MET N CA sing N N 391 MET N H sing N N 392 MET N H2 sing N N 393 MET CA C sing N N 394 MET CA CB sing N N 395 MET CA HA sing N N 396 MET C O doub N N 397 MET C OXT sing N N 398 MET CB CG sing N N 399 MET CB HB2 sing N N 400 MET CB HB3 sing N N 401 MET CG SD sing N N 402 MET CG HG2 sing N N 403 MET CG HG3 sing N N 404 MET SD CE sing N N 405 MET CE HE1 sing N N 406 MET CE HE2 sing N N 407 MET CE HE3 sing N N 408 MET OXT HXT sing N N 409 PHE N CA sing N N 410 PHE N H sing N N 411 PHE N H2 sing N N 412 PHE CA C sing N N 413 PHE CA CB sing N N 414 PHE CA HA sing N N 415 PHE C O doub N N 416 PHE C OXT sing N N 417 PHE CB CG sing N N 418 PHE CB HB2 sing N N 419 PHE CB HB3 sing N N 420 PHE CG CD1 doub Y N 421 PHE CG CD2 sing Y N 422 PHE CD1 CE1 sing Y N 423 PHE CD1 HD1 sing N N 424 PHE CD2 CE2 doub Y N 425 PHE CD2 HD2 sing N N 426 PHE CE1 CZ doub Y N 427 PHE CE1 HE1 sing N N 428 PHE CE2 CZ sing Y N 429 PHE CE2 HE2 sing N N 430 PHE CZ HZ sing N N 431 PHE OXT HXT sing N N 432 PRO N CA sing N N 433 PRO N CD sing N N 434 PRO N H sing N N 435 PRO CA C sing N N 436 PRO CA CB sing N N 437 PRO CA HA sing N N 438 PRO C O doub N N 439 PRO C OXT sing N N 440 PRO CB CG sing N N 441 PRO CB HB2 sing N N 442 PRO CB HB3 sing N N 443 PRO CG CD sing N N 444 PRO CG HG2 sing N N 445 PRO CG HG3 sing N N 446 PRO CD HD2 sing N N 447 PRO CD HD3 sing N N 448 PRO OXT HXT sing N N 449 THR N CA sing N N 450 THR N H sing N N 451 THR N H2 sing N N 452 THR CA C sing N N 453 THR CA CB sing N N 454 THR CA HA sing N N 455 THR C O doub N N 456 THR C OXT sing N N 457 THR CB OG1 sing N N 458 THR CB CG2 sing N N 459 THR CB HB sing N N 460 THR OG1 HG1 sing N N 461 THR CG2 HG21 sing N N 462 THR CG2 HG22 sing N N 463 THR CG2 HG23 sing N N 464 THR OXT HXT sing N N 465 TRP N CA sing N N 466 TRP N H sing N N 467 TRP N H2 sing N N 468 TRP CA C sing N N 469 TRP CA CB sing N N 470 TRP CA HA sing N N 471 TRP C O doub N N 472 TRP C OXT sing N N 473 TRP CB CG sing N N 474 TRP CB HB2 sing N N 475 TRP CB HB3 sing N N 476 TRP CG CD1 doub Y N 477 TRP CG CD2 sing Y N 478 TRP CD1 NE1 sing Y N 479 TRP CD1 HD1 sing N N 480 TRP CD2 CE2 doub Y N 481 TRP CD2 CE3 sing Y N 482 TRP NE1 CE2 sing Y N 483 TRP NE1 HE1 sing N N 484 TRP CE2 CZ2 sing Y N 485 TRP CE3 CZ3 doub Y N 486 TRP CE3 HE3 sing N N 487 TRP CZ2 CH2 doub Y N 488 TRP CZ2 HZ2 sing N N 489 TRP CZ3 CH2 sing Y N 490 TRP CZ3 HZ3 sing N N 491 TRP CH2 HH2 sing N N 492 TRP OXT HXT sing N N 493 TYR N CA sing N N 494 TYR N H sing N N 495 TYR N H2 sing N N 496 TYR CA C sing N N 497 TYR CA CB sing N N 498 TYR CA HA sing N N 499 TYR C O doub N N 500 TYR C OXT sing N N 501 TYR CB CG sing N N 502 TYR CB HB2 sing N N 503 TYR CB HB3 sing N N 504 TYR CG CD1 doub Y N 505 TYR CG CD2 sing Y N 506 TYR CD1 CE1 sing Y N 507 TYR CD1 HD1 sing N N 508 TYR CD2 CE2 doub Y N 509 TYR CD2 HD2 sing N N 510 TYR CE1 CZ doub Y N 511 TYR CE1 HE1 sing N N 512 TYR CE2 CZ sing Y N 513 TYR CE2 HE2 sing N N 514 TYR CZ OH sing N N 515 TYR OH HH sing N N 516 TYR OXT HXT sing N N 517 VAL N CA sing N N 518 VAL N H sing N N 519 VAL N H2 sing N N 520 VAL CA C sing N N 521 VAL CA CB sing N N 522 VAL CA HA sing N N 523 VAL C O doub N N 524 VAL C OXT sing N N 525 VAL CB CG1 sing N N 526 VAL CB CG2 sing N N 527 VAL CB HB sing N N 528 VAL CG1 HG11 sing N N 529 VAL CG1 HG12 sing N N 530 VAL CG1 HG13 sing N N 531 VAL CG2 HG21 sing N N 532 VAL CG2 HG22 sing N N 533 VAL CG2 HG23 sing N N 534 VAL OXT HXT sing N N 535 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;benzyl [(1S,4S,7S,8R,9R,10S,13S,16S)-7,10-dibenzyl-8,9-dihydroxy-1,16-dimethyl-4,13-bis(1-methylethyl)-2,5,12,15,18-pentaoxo-20-phenyl-19-oxa-3,6,11,14,17-pentaazaicos-1-yl]carbamate ; 3TL 3 '(1S,2S)-2-methylcyclohexanol' 4DX 4 'DIMETHYL SULFOXIDE' DMS 5 'POTASSIUM ION' K 6 BETA-MERCAPTOETHANOL BME 7 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2AZ8 _pdbx_initial_refinement_model.details 'Dimer generated from PDB entry 2AZ8' #