data_3KFJ
#
_entry.id 3KFJ
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.378
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 3KFJ pdb_00003kfj 10.2210/pdb3kfj/pdb
RCSB RCSB055928 ? ?
WWPDB D_1000055928 ? ?
#
loop_
_pdbx_database_related.db_name
_pdbx_database_related.db_id
_pdbx_database_related.details
_pdbx_database_related.content_type
PDB 3C7I . unspecified
PDB 2HUW . unspecified
PDB 3IMD . unspecified
PDB 3IMJ . unspecified
PDB 3IN7 . unspecified
PDB 3IN8 . unspecified
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 3KFJ
_pdbx_database_status.recvd_initial_deposition_date 2009-10-27
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
_audit_author.name 'Clements, J.H.'
_audit_author.pdbx_ordinal 1
#
_citation.id primary
_citation.title
;Thermodynamic and structural effects of conformational constraints in protein-ligand interactions. Entropic paradoxy associated with ligand preorganization.
;
_citation.journal_abbrev J.Am.Chem.Soc.
_citation.journal_volume 131
_citation.page_first 16758
_citation.page_last 16770
_citation.year 2009
_citation.journal_id_ASTM JACSAT
_citation.country US
_citation.journal_id_ISSN 0002-7863
_citation.journal_id_CSD 0004
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 19886660
_citation.pdbx_database_id_DOI 10.1021/ja904698q
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'DeLorbe, J.E.' 1 ?
primary 'Clements, J.H.' 2 ?
primary 'Teresk, M.G.' 3 ?
primary 'Benfield, A.P.' 4 ?
primary 'Plake, H.R.' 5 ?
primary 'Millspaugh, L.E.' 6 ?
primary 'Martin, S.F.' 7 ?
#
_cell.entry_id 3KFJ
_cell.length_a 41.873
_cell.length_b 41.873
_cell.length_c 108.811
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 8
_cell.pdbx_unique_axis ?
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.entry_id 3KFJ
_symmetry.space_group_name_H-M 'P 43 21 2'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 96
_symmetry.space_group_name_Hall ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer man 'Growth factor receptor-bound protein 2' 13758.543 1
? ? 'SH2 domain, residues 53-163' ?
2 non-polymer syn 'N-{(2S)-4-(methylamino)-4-oxo-2-[4-(phosphonooxy)benzyl]butanoyl}-L-alpha-glutamyl-L-aspartamide' 559.464 1
? ? ? ?
3 non-polymer syn 'CHLORIDE ION' 35.453 2
? ? ? ?
4 non-polymer syn 'MAGNESIUM ION' 24.305 1
? ? ? ?
5 water nat water 18.015 92
? ? ? ?
#
_entity_name_com.entity_id 1
_entity_name_com.name 'Adapter protein GRB2, SH2/SH3 adapter GRB2, Protein Ash'
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code
;IEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELV
DYHRSTSVSRNQQIFLRDIEQVPQQPTYVQAHHHHHH
;
_entity_poly.pdbx_seq_one_letter_code_can
;IEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELV
DYHRSTSVSRNQQIFLRDIEQVPQQPTYVQAHHHHHH
;
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 ILE n
1 2 GLU n
1 3 MET n
1 4 LYS n
1 5 PRO n
1 6 HIS n
1 7 PRO n
1 8 TRP n
1 9 PHE n
1 10 PHE n
1 11 GLY n
1 12 LYS n
1 13 ILE n
1 14 PRO n
1 15 ARG n
1 16 ALA n
1 17 LYS n
1 18 ALA n
1 19 GLU n
1 20 GLU n
1 21 MET n
1 22 LEU n
1 23 SER n
1 24 LYS n
1 25 GLN n
1 26 ARG n
1 27 HIS n
1 28 ASP n
1 29 GLY n
1 30 ALA n
1 31 PHE n
1 32 LEU n
1 33 ILE n
1 34 ARG n
1 35 GLU n
1 36 SER n
1 37 GLU n
1 38 SER n
1 39 ALA n
1 40 PRO n
1 41 GLY n
1 42 ASP n
1 43 PHE n
1 44 SER n
1 45 LEU n
1 46 SER n
1 47 VAL n
1 48 LYS n
1 49 PHE n
1 50 GLY n
1 51 ASN n
1 52 ASP n
1 53 VAL n
1 54 GLN n
1 55 HIS n
1 56 PHE n
1 57 LYS n
1 58 VAL n
1 59 LEU n
1 60 ARG n
1 61 ASP n
1 62 GLY n
1 63 ALA n
1 64 GLY n
1 65 LYS n
1 66 TYR n
1 67 PHE n
1 68 LEU n
1 69 TRP n
1 70 VAL n
1 71 VAL n
1 72 LYS n
1 73 PHE n
1 74 ASN n
1 75 SER n
1 76 LEU n
1 77 ASN n
1 78 GLU n
1 79 LEU n
1 80 VAL n
1 81 ASP n
1 82 TYR n
1 83 HIS n
1 84 ARG n
1 85 SER n
1 86 THR n
1 87 SER n
1 88 VAL n
1 89 SER n
1 90 ARG n
1 91 ASN n
1 92 GLN n
1 93 GLN n
1 94 ILE n
1 95 PHE n
1 96 LEU n
1 97 ARG n
1 98 ASP n
1 99 ILE n
1 100 GLU n
1 101 GLN n
1 102 VAL n
1 103 PRO n
1 104 GLN n
1 105 GLN n
1 106 PRO n
1 107 THR n
1 108 TYR n
1 109 VAL n
1 110 GLN n
1 111 ALA n
1 112 HIS n
1 113 HIS n
1 114 HIS n
1 115 HIS n
1 116 HIS n
1 117 HIS n
#
_entity_src_gen.entity_id 1
_entity_src_gen.pdbx_src_id 1
_entity_src_gen.pdbx_alt_source_flag sample
_entity_src_gen.pdbx_seq_type ?
_entity_src_gen.pdbx_beg_seq_num ?
_entity_src_gen.pdbx_end_seq_num ?
_entity_src_gen.gene_src_common_name human
_entity_src_gen.gene_src_genus ?
_entity_src_gen.pdbx_gene_src_gene 'GRB2, ASH'
_entity_src_gen.gene_src_species ?
_entity_src_gen.gene_src_strain ?
_entity_src_gen.gene_src_tissue ?
_entity_src_gen.gene_src_tissue_fraction ?
_entity_src_gen.gene_src_details 'Sequence was expressed with a 6-His tag'
_entity_src_gen.pdbx_gene_src_fragment ?
_entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens'
_entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606
_entity_src_gen.pdbx_gene_src_variant ?
_entity_src_gen.pdbx_gene_src_cell_line ?
_entity_src_gen.pdbx_gene_src_atcc ?
_entity_src_gen.pdbx_gene_src_organ ?
_entity_src_gen.pdbx_gene_src_organelle ?
_entity_src_gen.pdbx_gene_src_cell ?
_entity_src_gen.pdbx_gene_src_cellular_location ?
_entity_src_gen.host_org_common_name ?
_entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli'
_entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562
_entity_src_gen.host_org_genus ?
_entity_src_gen.pdbx_host_org_gene ?
_entity_src_gen.pdbx_host_org_organ ?
_entity_src_gen.host_org_species ?
_entity_src_gen.pdbx_host_org_tissue ?
_entity_src_gen.pdbx_host_org_tissue_fraction ?
_entity_src_gen.pdbx_host_org_strain SG13009
_entity_src_gen.pdbx_host_org_variant ?
_entity_src_gen.pdbx_host_org_cell_line ?
_entity_src_gen.pdbx_host_org_atcc ?
_entity_src_gen.pdbx_host_org_culture_collection ?
_entity_src_gen.pdbx_host_org_cell ?
_entity_src_gen.pdbx_host_org_organelle ?
_entity_src_gen.pdbx_host_org_cellular_location ?
_entity_src_gen.pdbx_host_org_vector_type plasmid
_entity_src_gen.pdbx_host_org_vector ?
_entity_src_gen.host_org_details ?
_entity_src_gen.expression_system_id ?
_entity_src_gen.plasmid_name pQE-60
_entity_src_gen.plasmid_details ?
_entity_src_gen.pdbx_description ?
#
_struct_ref.id 1
_struct_ref.db_name UNP
_struct_ref.db_code GRB2_HUMAN
_struct_ref.pdbx_db_accession P62993
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code
;IEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELV
DYHRSTSVSRNQQIFLRDIEQVPQQPTYVQA
;
_struct_ref.pdbx_align_begin 53
_struct_ref.pdbx_db_isoform ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 3KFJ
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 111
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession P62993
_struct_ref_seq.db_align_beg 53
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 163
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 53
_struct_ref_seq.pdbx_auth_seq_align_end 163
#
loop_
_struct_ref_seq_dif.align_id
_struct_ref_seq_dif.pdbx_pdb_id_code
_struct_ref_seq_dif.mon_id
_struct_ref_seq_dif.pdbx_pdb_strand_id
_struct_ref_seq_dif.seq_num
_struct_ref_seq_dif.pdbx_pdb_ins_code
_struct_ref_seq_dif.pdbx_seq_db_name
_struct_ref_seq_dif.pdbx_seq_db_accession_code
_struct_ref_seq_dif.db_mon_id
_struct_ref_seq_dif.pdbx_seq_db_seq_num
_struct_ref_seq_dif.details
_struct_ref_seq_dif.pdbx_auth_seq_num
_struct_ref_seq_dif.pdbx_ordinal
1 3KFJ HIS A 112 ? UNP P62993 ? ? 'expression tag' 164 1
1 3KFJ HIS A 113 ? UNP P62993 ? ? 'expression tag' 165 2
1 3KFJ HIS A 114 ? UNP P62993 ? ? 'expression tag' 166 3
1 3KFJ HIS A 115 ? UNP P62993 ? ? 'expression tag' 167 4
1 3KFJ HIS A 116 ? UNP P62993 ? ? 'expression tag' 168 5
1 3KFJ HIS A 117 ? UNP P62993 ? ? 'expression tag' 169 6
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ALA 'L-peptide linking' y ALANINE ?
'C3 H7 N O2' 89.093
ARG 'L-peptide linking' y ARGININE ?
'C6 H15 N4 O2 1' 175.209
ASN 'L-peptide linking' y ASPARAGINE ?
'C4 H8 N2 O3' 132.118
ASP 'L-peptide linking' y 'ASPARTIC ACID' ?
'C4 H7 N O4' 133.103
CL non-polymer . 'CHLORIDE ION' ?
'Cl -1' 35.453
GLN 'L-peptide linking' y GLUTAMINE ?
'C5 H10 N2 O3' 146.144
GLU 'L-peptide linking' y 'GLUTAMIC ACID' ?
'C5 H9 N O4' 147.129
GLY 'peptide linking' y GLYCINE ?
'C2 H5 N O2' 75.067
HIS 'L-peptide linking' y HISTIDINE ?
'C6 H10 N3 O2 1' 156.162
HOH non-polymer . WATER ?
'H2 O' 18.015
ILE 'L-peptide linking' y ISOLEUCINE ?
'C6 H13 N O2' 131.173
LEU 'L-peptide linking' y LEUCINE ?
'C6 H13 N O2' 131.173
LYS 'L-peptide linking' y LYSINE ?
'C6 H15 N2 O2 1' 147.195
MET 'L-peptide linking' y METHIONINE ?
'C5 H11 N O2 S' 149.211
MG non-polymer . 'MAGNESIUM ION' ?
'Mg 2' 24.305
PHE 'L-peptide linking' y PHENYLALANINE ?
'C9 H11 N O2' 165.189
PRO 'L-peptide linking' y PROLINE ?
'C5 H9 N O2' 115.130
SER 'L-peptide linking' y SERINE ?
'C3 H7 N O3' 105.093
THR 'L-peptide linking' y THREONINE ?
'C4 H9 N O3' 119.119
TRP 'L-peptide linking' y TRYPTOPHAN ?
'C11 H12 N2 O2' 204.225
TYR 'L-peptide linking' y TYROSINE ?
'C9 H11 N O3' 181.189
VAL 'L-peptide linking' y VALINE ?
'C5 H11 N O2' 117.146
YEN peptide-like . 'N-{(2S)-4-(methylamino)-4-oxo-2-[4-(phosphonooxy)benzyl]butanoyl}-L-alpha-glutamyl-L-aspartamide' ?
'C21 H30 N5 O11 P' 559.464
#
_exptl.entry_id 3KFJ
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 1.73
_exptl_crystal.density_percent_sol 29.04
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.temp 298
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 8.5
_exptl_crystal_grow.pdbx_details
;Ligand in lyophilized powder form was dissolved in a 9.5 mg/mL solution of Grb2 SH2 in water such to give a protein/ligand molar ratio of 2:1. 4uL of this solution was mixed with 3uL of 0.1 M MgCl2 x 6H2O, 30% w/v PEG MW4000, 0.1 M TRIS, pH 8.5 to create the hanging drop, which yielded crystals of the protein-ligand complex in the presence of the above-mentioned solution after four weeks at room temperature., VAPOR DIFFUSION, HANGING DROP, temperature 298K
;
_exptl_crystal_grow.pdbx_pH_range ?
#
_diffrn.id 1
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector 'IMAGE PLATE'
_diffrn_detector.type 'RIGAKU RAXIS IV'
_diffrn_detector.pdbx_collection_date 2007-04-21
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator 'Blue max-flux confocal'
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1.5418
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source 'ROTATING ANODE'
_diffrn_source.type 'RIGAKU RU200'
_diffrn_source.pdbx_synchrotron_site ?
_diffrn_source.pdbx_synchrotron_beamline ?
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list 1.5418
#
_reflns.entry_id 3KFJ
_reflns.observed_criterion_sigma_I 0
_reflns.observed_criterion_sigma_F 0
_reflns.d_resolution_low 50.00
_reflns.d_resolution_high 2.02
_reflns.number_obs 6814
_reflns.number_all 6925
_reflns.percent_possible_obs 98.4
_reflns.pdbx_Rmerge_I_obs 0.050
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI 63.8
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy 8.8
_reflns.R_free_details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_ordinal 1
_reflns.pdbx_diffrn_id 1
#
_reflns_shell.d_res_high 2.02
_reflns_shell.d_res_low 2.09
_reflns_shell.percent_possible_all 100
_reflns_shell.Rmerge_I_obs 0.102
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.meanI_over_sigI_obs ?
_reflns_shell.pdbx_redundancy 9.0
_reflns_shell.percent_possible_obs ?
_reflns_shell.number_unique_all 669
_reflns_shell.number_measured_all ?
_reflns_shell.number_measured_obs ?
_reflns_shell.number_unique_obs ?
_reflns_shell.pdbx_chi_squared ?
_reflns_shell.pdbx_ordinal 1
_reflns_shell.pdbx_diffrn_id 1
#
_refine.entry_id 3KFJ
_refine.ls_number_reflns_obs 6723
_refine.ls_number_reflns_all 7067
_refine.pdbx_ls_sigma_I 0
_refine.pdbx_ls_sigma_F 0
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 50.00
_refine.ls_d_res_high 2.02
_refine.ls_percent_reflns_obs 95.1
_refine.ls_R_factor_obs ?
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work 0.1975
_refine.ls_R_factor_R_free 0.2296
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free ?
_refine.ls_number_reflns_R_free 350
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.B_iso_mean 16.3393
_refine.aniso_B[1][1] 0.866
_refine.aniso_B[2][2] 0.866
_refine.aniso_B[3][3] -1.732
_refine.aniso_B[1][2] 0.000
_refine.aniso_B[1][3] 0.000
_refine.aniso_B[2][3] 0.000
_refine.solvent_model_details ?
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.details ?
_refine.pdbx_starting_model 'pdb entry 3C7I'
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values 'Engh & Huber'
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details random
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.overall_SU_B ?
_refine.ls_redundancy_reflns_obs ?
_refine.B_iso_min ?
_refine.B_iso_max ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 824
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 41
_refine_hist.number_atoms_solvent 92
_refine_hist.number_atoms_total 957
_refine_hist.d_res_high 2.02
_refine_hist.d_res_low 50.00
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
c_bond_d 0.012 ? ? ? 'X-RAY DIFFRACTION' ?
c_angle_d 1.622 ? ? ? 'X-RAY DIFFRACTION' ?
c_mcbond_it 1.114 ? ? ? 'X-RAY DIFFRACTION' ?
c_mcangle_it 1.620 ? ? ? 'X-RAY DIFFRACTION' ?
#
_struct.entry_id 3KFJ
_struct.title
'Crystal Structure of the Grb2 SH2 Domain in Complex with a Flexible Ac-pY-E-N-NH2 Tripeptide Mimic'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 3KFJ
_struct_keywords.pdbx_keywords 'SIGNALING PROTEIN/PEPTIDE'
_struct_keywords.text
;Golgi apparatus, Host-virus interaction, Phosphoprotein, SH2 domain, SH3 domain, SIGNALING PROTEIN, SIGNALING PROTEIN-PEPTIDE COMPLEX
;
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
D N N 3 ?
E N N 4 ?
F N N 5 ?
#
_struct_biol.id 1
_struct_biol.details ?
#
loop_
_struct_conf.conf_type_id
_struct_conf.id
_struct_conf.pdbx_PDB_helix_id
_struct_conf.beg_label_comp_id
_struct_conf.beg_label_asym_id
_struct_conf.beg_label_seq_id
_struct_conf.pdbx_beg_PDB_ins_code
_struct_conf.end_label_comp_id
_struct_conf.end_label_asym_id
_struct_conf.end_label_seq_id
_struct_conf.pdbx_end_PDB_ins_code
_struct_conf.beg_auth_comp_id
_struct_conf.beg_auth_asym_id
_struct_conf.beg_auth_seq_id
_struct_conf.end_auth_comp_id
_struct_conf.end_auth_asym_id
_struct_conf.end_auth_seq_id
_struct_conf.pdbx_PDB_helix_class
_struct_conf.details
_struct_conf.pdbx_PDB_helix_length
HELX_P HELX_P1 1 PRO A 14 ? LYS A 24 ? PRO A 66 LYS A 76 1 ? 11
HELX_P HELX_P2 2 SER A 75 ? HIS A 83 ? SER A 127 HIS A 135 1 ? 9
#
_struct_conf_type.id HELX_P
_struct_conf_type.criteria ?
_struct_conf_type.reference ?
#
_struct_sheet.id A
_struct_sheet.type ?
_struct_sheet.number_strands 5
_struct_sheet.details ?
#
loop_
_struct_sheet_order.sheet_id
_struct_sheet_order.range_id_1
_struct_sheet_order.range_id_2
_struct_sheet_order.offset
_struct_sheet_order.sense
A 1 2 ? anti-parallel
A 2 3 ? anti-parallel
A 3 4 ? anti-parallel
A 4 5 ? anti-parallel
#
loop_
_struct_sheet_range.sheet_id
_struct_sheet_range.id
_struct_sheet_range.beg_label_comp_id
_struct_sheet_range.beg_label_asym_id
_struct_sheet_range.beg_label_seq_id
_struct_sheet_range.pdbx_beg_PDB_ins_code
_struct_sheet_range.end_label_comp_id
_struct_sheet_range.end_label_asym_id
_struct_sheet_range.end_label_seq_id
_struct_sheet_range.pdbx_end_PDB_ins_code
_struct_sheet_range.beg_auth_comp_id
_struct_sheet_range.beg_auth_asym_id
_struct_sheet_range.beg_auth_seq_id
_struct_sheet_range.end_auth_comp_id
_struct_sheet_range.end_auth_asym_id
_struct_sheet_range.end_auth_seq_id
A 1 PHE A 31 ? GLU A 35 ? PHE A 83 GLU A 87
A 2 PHE A 43 ? PHE A 49 ? PHE A 95 PHE A 101
A 3 ASP A 52 ? ARG A 60 ? ASP A 104 ARG A 112
A 4 TYR A 66 ? PHE A 67 ? TYR A 118 PHE A 119
A 5 LYS A 72 ? PHE A 73 ? LYS A 124 PHE A 125
#
loop_
_pdbx_struct_sheet_hbond.sheet_id
_pdbx_struct_sheet_hbond.range_id_1
_pdbx_struct_sheet_hbond.range_id_2
_pdbx_struct_sheet_hbond.range_1_label_atom_id
_pdbx_struct_sheet_hbond.range_1_label_comp_id
_pdbx_struct_sheet_hbond.range_1_label_asym_id
_pdbx_struct_sheet_hbond.range_1_label_seq_id
_pdbx_struct_sheet_hbond.range_1_PDB_ins_code
_pdbx_struct_sheet_hbond.range_1_auth_atom_id
_pdbx_struct_sheet_hbond.range_1_auth_comp_id
_pdbx_struct_sheet_hbond.range_1_auth_asym_id
_pdbx_struct_sheet_hbond.range_1_auth_seq_id
_pdbx_struct_sheet_hbond.range_2_label_atom_id
_pdbx_struct_sheet_hbond.range_2_label_comp_id
_pdbx_struct_sheet_hbond.range_2_label_asym_id
_pdbx_struct_sheet_hbond.range_2_label_seq_id
_pdbx_struct_sheet_hbond.range_2_PDB_ins_code
_pdbx_struct_sheet_hbond.range_2_auth_atom_id
_pdbx_struct_sheet_hbond.range_2_auth_comp_id
_pdbx_struct_sheet_hbond.range_2_auth_asym_id
_pdbx_struct_sheet_hbond.range_2_auth_seq_id
A 1 2 N ARG A 34 ? N ARG A 86 O SER A 44 ? O SER A 96
A 2 3 N LEU A 45 ? N LEU A 97 O PHE A 56 ? O PHE A 108
A 3 4 N LEU A 59 ? N LEU A 111 O PHE A 67 ? O PHE A 119
A 4 5 N TYR A 66 ? N TYR A 118 O PHE A 73 ? O PHE A 125
#
loop_
_struct_site.id
_struct_site.pdbx_evidence_code
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_struct_site.pdbx_auth_ins_code
_struct_site.pdbx_num_residues
_struct_site.details
AC1 Software A YEN 1 ? 20 'BINDING SITE FOR RESIDUE YEN A 1'
AC2 Software A CL 164 ? 4 'BINDING SITE FOR RESIDUE CL A 164'
AC3 Software A CL 2 ? 2 'BINDING SITE FOR RESIDUE CL A 2'
AC4 Software A MG 3 ? 3 'BINDING SITE FOR RESIDUE MG A 3'
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 20 HOH F . ? HOH A 17 . ? 1_555 ?
2 AC1 20 HOH F . ? HOH A 22 . ? 1_555 ?
3 AC1 20 HOH F . ? HOH A 28 . ? 1_555 ?
4 AC1 20 HOH F . ? HOH A 35 . ? 1_555 ?
5 AC1 20 ARG A 15 ? ARG A 67 . ? 1_555 ?
6 AC1 20 ARG A 26 ? ARG A 78 . ? 7_545 ?
7 AC1 20 ARG A 34 ? ARG A 86 . ? 1_555 ?
8 AC1 20 SER A 36 ? SER A 88 . ? 1_555 ?
9 AC1 20 SER A 38 ? SER A 90 . ? 1_555 ?
10 AC1 20 SER A 44 ? SER A 96 . ? 1_555 ?
11 AC1 20 GLN A 54 ? GLN A 106 . ? 1_555 ?
12 AC1 20 HIS A 55 ? HIS A 107 . ? 1_555 ?
13 AC1 20 PHE A 56 ? PHE A 108 . ? 1_555 ?
14 AC1 20 LYS A 57 ? LYS A 109 . ? 1_555 ?
15 AC1 20 LEU A 68 ? LEU A 120 . ? 1_555 ?
16 AC1 20 TRP A 69 ? TRP A 121 . ? 1_555 ?
17 AC1 20 GLU A 100 ? GLU A 152 . ? 7_545 ?
18 AC1 20 VAL A 102 ? VAL A 154 . ? 7_545 ?
19 AC1 20 PRO A 103 ? PRO A 155 . ? 7_545 ?
20 AC1 20 HOH F . ? HOH A 165 . ? 1_555 ?
21 AC2 4 ARG A 26 ? ARG A 78 . ? 1_555 ?
22 AC2 4 LYS A 57 ? LYS A 109 . ? 7_655 ?
23 AC2 4 GLU A 100 ? GLU A 152 . ? 1_555 ?
24 AC2 4 HOH F . ? HOH A 200 . ? 1_555 ?
25 AC3 2 HOH F . ? HOH A 52 . ? 7_545 ?
26 AC3 2 ARG A 60 ? ARG A 112 . ? 1_555 ?
27 AC4 3 SER A 87 ? SER A 139 . ? 1_555 ?
28 AC4 3 GLN A 93 ? GLN A 145 . ? 1_555 ?
29 AC4 3 HOH F . ? HOH A 182 . ? 5_554 ?
#
_database_PDB_matrix.entry_id 3KFJ
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_atom_sites.entry_id 3KFJ
_atom_sites.fract_transf_matrix[1][1] 0.023882
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.023882
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.009190
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
CL
MG
N
O
P
S
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 ILE 1 53 ? ? ? A . n
A 1 2 GLU 2 54 ? ? ? A . n
A 1 3 MET 3 55 ? ? ? A . n
A 1 4 LYS 4 56 56 LYS LYS A . n
A 1 5 PRO 5 57 57 PRO PRO A . n
A 1 6 HIS 6 58 58 HIS HIS A . n
A 1 7 PRO 7 59 59 PRO PRO A . n
A 1 8 TRP 8 60 60 TRP TRP A . n
A 1 9 PHE 9 61 61 PHE PHE A . n
A 1 10 PHE 10 62 62 PHE PHE A . n
A 1 11 GLY 11 63 63 GLY GLY A . n
A 1 12 LYS 12 64 64 LYS LYS A . n
A 1 13 ILE 13 65 65 ILE ILE A . n
A 1 14 PRO 14 66 66 PRO PRO A . n
A 1 15 ARG 15 67 67 ARG ARG A . n
A 1 16 ALA 16 68 68 ALA ALA A . n
A 1 17 LYS 17 69 69 LYS LYS A . n
A 1 18 ALA 18 70 70 ALA ALA A . n
A 1 19 GLU 19 71 71 GLU GLU A . n
A 1 20 GLU 20 72 72 GLU GLU A . n
A 1 21 MET 21 73 73 MET MET A . n
A 1 22 LEU 22 74 74 LEU LEU A . n
A 1 23 SER 23 75 75 SER SER A . n
A 1 24 LYS 24 76 76 LYS LYS A . n
A 1 25 GLN 25 77 77 GLN GLN A . n
A 1 26 ARG 26 78 78 ARG ARG A . n
A 1 27 HIS 27 79 79 HIS HIS A . n
A 1 28 ASP 28 80 80 ASP ASP A . n
A 1 29 GLY 29 81 81 GLY GLY A . n
A 1 30 ALA 30 82 82 ALA ALA A . n
A 1 31 PHE 31 83 83 PHE PHE A . n
A 1 32 LEU 32 84 84 LEU LEU A . n
A 1 33 ILE 33 85 85 ILE ILE A . n
A 1 34 ARG 34 86 86 ARG ARG A . n
A 1 35 GLU 35 87 87 GLU GLU A . n
A 1 36 SER 36 88 88 SER SER A . n
A 1 37 GLU 37 89 89 GLU GLU A . n
A 1 38 SER 38 90 90 SER SER A . n
A 1 39 ALA 39 91 91 ALA ALA A . n
A 1 40 PRO 40 92 92 PRO PRO A . n
A 1 41 GLY 41 93 93 GLY GLY A . n
A 1 42 ASP 42 94 94 ASP ASP A . n
A 1 43 PHE 43 95 95 PHE PHE A . n
A 1 44 SER 44 96 96 SER SER A . n
A 1 45 LEU 45 97 97 LEU LEU A . n
A 1 46 SER 46 98 98 SER SER A . n
A 1 47 VAL 47 99 99 VAL VAL A . n
A 1 48 LYS 48 100 100 LYS LYS A . n
A 1 49 PHE 49 101 101 PHE PHE A . n
A 1 50 GLY 50 102 102 GLY GLY A . n
A 1 51 ASN 51 103 103 ASN ASN A . n
A 1 52 ASP 52 104 104 ASP ASP A . n
A 1 53 VAL 53 105 105 VAL VAL A . n
A 1 54 GLN 54 106 106 GLN GLN A . n
A 1 55 HIS 55 107 107 HIS HIS A . n
A 1 56 PHE 56 108 108 PHE PHE A . n
A 1 57 LYS 57 109 109 LYS LYS A . n
A 1 58 VAL 58 110 110 VAL VAL A . n
A 1 59 LEU 59 111 111 LEU LEU A . n
A 1 60 ARG 60 112 112 ARG ARG A . n
A 1 61 ASP 61 113 113 ASP ASP A . n
A 1 62 GLY 62 114 114 GLY GLY A . n
A 1 63 ALA 63 115 115 ALA ALA A . n
A 1 64 GLY 64 116 116 GLY GLY A . n
A 1 65 LYS 65 117 117 LYS LYS A . n
A 1 66 TYR 66 118 118 TYR TYR A . n
A 1 67 PHE 67 119 119 PHE PHE A . n
A 1 68 LEU 68 120 120 LEU LEU A . n
A 1 69 TRP 69 121 121 TRP TRP A . n
A 1 70 VAL 70 122 122 VAL VAL A . n
A 1 71 VAL 71 123 123 VAL VAL A . n
A 1 72 LYS 72 124 124 LYS LYS A . n
A 1 73 PHE 73 125 125 PHE PHE A . n
A 1 74 ASN 74 126 126 ASN ASN A . n
A 1 75 SER 75 127 127 SER SER A . n
A 1 76 LEU 76 128 128 LEU LEU A . n
A 1 77 ASN 77 129 129 ASN ASN A . n
A 1 78 GLU 78 130 130 GLU GLU A . n
A 1 79 LEU 79 131 131 LEU LEU A . n
A 1 80 VAL 80 132 132 VAL VAL A . n
A 1 81 ASP 81 133 133 ASP ASP A . n
A 1 82 TYR 82 134 134 TYR TYR A . n
A 1 83 HIS 83 135 135 HIS HIS A . n
A 1 84 ARG 84 136 136 ARG ARG A . n
A 1 85 SER 85 137 137 SER SER A . n
A 1 86 THR 86 138 138 THR THR A . n
A 1 87 SER 87 139 139 SER SER A . n
A 1 88 VAL 88 140 140 VAL VAL A . n
A 1 89 SER 89 141 141 SER SER A . n
A 1 90 ARG 90 142 142 ARG ARG A . n
A 1 91 ASN 91 143 143 ASN ASN A . n
A 1 92 GLN 92 144 144 GLN GLN A . n
A 1 93 GLN 93 145 145 GLN GLN A . n
A 1 94 ILE 94 146 146 ILE ILE A . n
A 1 95 PHE 95 147 147 PHE PHE A . n
A 1 96 LEU 96 148 148 LEU LEU A . n
A 1 97 ARG 97 149 149 ARG ARG A . n
A 1 98 ASP 98 150 150 ASP ASP A . n
A 1 99 ILE 99 151 151 ILE ILE A . n
A 1 100 GLU 100 152 152 GLU GLU A . n
A 1 101 GLN 101 153 153 GLN GLN A . n
A 1 102 VAL 102 154 154 VAL VAL A . n
A 1 103 PRO 103 155 155 PRO PRO A . n
A 1 104 GLN 104 156 ? ? ? A . n
A 1 105 GLN 105 157 ? ? ? A . n
A 1 106 PRO 106 158 ? ? ? A . n
A 1 107 THR 107 159 ? ? ? A . n
A 1 108 TYR 108 160 ? ? ? A . n
A 1 109 VAL 109 161 ? ? ? A . n
A 1 110 GLN 110 162 ? ? ? A . n
A 1 111 ALA 111 163 ? ? ? A . n
A 1 112 HIS 112 164 ? ? ? A . n
A 1 113 HIS 113 165 ? ? ? A . n
A 1 114 HIS 114 166 ? ? ? A . n
A 1 115 HIS 115 167 ? ? ? A . n
A 1 116 HIS 116 168 ? ? ? A . n
A 1 117 HIS 117 169 ? ? ? A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 YEN 1 1 1 YEN YEN A .
C 3 CL 1 164 1 CL CL A .
D 3 CL 1 2 2 CL CL A .
E 4 MG 1 3 3 MG MG A .
F 5 HOH 1 4 4 HOH HOH A .
F 5 HOH 2 6 6 HOH HOH A .
F 5 HOH 3 7 7 HOH HOH A .
F 5 HOH 4 8 8 HOH HOH A .
F 5 HOH 5 11 11 HOH HOH A .
F 5 HOH 6 12 12 HOH HOH A .
F 5 HOH 7 13 13 HOH HOH A .
F 5 HOH 8 14 14 HOH HOH A .
F 5 HOH 9 15 15 HOH HOH A .
F 5 HOH 10 16 16 HOH HOH A .
F 5 HOH 11 17 17 HOH HOH A .
F 5 HOH 12 18 18 HOH HOH A .
F 5 HOH 13 21 21 HOH HOH A .
F 5 HOH 14 22 22 HOH HOH A .
F 5 HOH 15 25 25 HOH HOH A .
F 5 HOH 16 26 26 HOH HOH A .
F 5 HOH 17 27 27 HOH HOH A .
F 5 HOH 18 28 28 HOH HOH A .
F 5 HOH 19 29 29 HOH HOH A .
F 5 HOH 20 30 30 HOH HOH A .
F 5 HOH 21 31 31 HOH HOH A .
F 5 HOH 22 32 32 HOH HOH A .
F 5 HOH 23 33 33 HOH HOH A .
F 5 HOH 24 34 34 HOH HOH A .
F 5 HOH 25 35 35 HOH HOH A .
F 5 HOH 26 37 37 HOH HOH A .
F 5 HOH 27 38 38 HOH HOH A .
F 5 HOH 28 39 39 HOH HOH A .
F 5 HOH 29 40 40 HOH HOH A .
F 5 HOH 30 41 41 HOH HOH A .
F 5 HOH 31 42 42 HOH HOH A .
F 5 HOH 32 44 44 HOH HOH A .
F 5 HOH 33 45 45 HOH HOH A .
F 5 HOH 34 46 46 HOH HOH A .
F 5 HOH 35 47 47 HOH HOH A .
F 5 HOH 36 48 48 HOH HOH A .
F 5 HOH 37 49 49 HOH HOH A .
F 5 HOH 38 51 51 HOH HOH A .
F 5 HOH 39 52 52 HOH HOH A .
F 5 HOH 40 165 3 HOH HOH A .
F 5 HOH 41 166 53 HOH HOH A .
F 5 HOH 42 167 54 HOH HOH A .
F 5 HOH 43 168 55 HOH HOH A .
F 5 HOH 44 169 56 HOH HOH A .
F 5 HOH 45 170 57 HOH HOH A .
F 5 HOH 46 171 58 HOH HOH A .
F 5 HOH 47 172 59 HOH HOH A .
F 5 HOH 48 173 60 HOH HOH A .
F 5 HOH 49 174 61 HOH HOH A .
F 5 HOH 50 175 62 HOH HOH A .
F 5 HOH 51 176 63 HOH HOH A .
F 5 HOH 52 177 64 HOH HOH A .
F 5 HOH 53 178 65 HOH HOH A .
F 5 HOH 54 179 66 HOH HOH A .
F 5 HOH 55 180 67 HOH HOH A .
F 5 HOH 56 181 68 HOH HOH A .
F 5 HOH 57 182 69 HOH HOH A .
F 5 HOH 58 183 70 HOH HOH A .
F 5 HOH 59 184 71 HOH HOH A .
F 5 HOH 60 185 72 HOH HOH A .
F 5 HOH 61 186 74 HOH HOH A .
F 5 HOH 62 187 75 HOH HOH A .
F 5 HOH 63 188 76 HOH HOH A .
F 5 HOH 64 189 77 HOH HOH A .
F 5 HOH 65 190 78 HOH HOH A .
F 5 HOH 66 191 80 HOH HOH A .
F 5 HOH 67 192 85 HOH HOH A .
F 5 HOH 68 193 87 HOH HOH A .
F 5 HOH 69 194 88 HOH HOH A .
F 5 HOH 70 195 93 HOH HOH A .
F 5 HOH 71 196 95 HOH HOH A .
F 5 HOH 72 197 96 HOH HOH A .
F 5 HOH 73 198 97 HOH HOH A .
F 5 HOH 74 199 98 HOH HOH A .
F 5 HOH 75 200 99 HOH HOH A .
F 5 HOH 76 201 100 HOH HOH A .
F 5 HOH 77 202 101 HOH HOH A .
F 5 HOH 78 203 102 HOH HOH A .
F 5 HOH 79 204 104 HOH HOH A .
F 5 HOH 80 205 105 HOH HOH A .
F 5 HOH 81 206 106 HOH HOH A .
F 5 HOH 82 207 107 HOH HOH A .
F 5 HOH 83 208 108 HOH HOH A .
F 5 HOH 84 209 109 HOH HOH A .
F 5 HOH 85 210 110 HOH HOH A .
F 5 HOH 86 211 112 HOH HOH A .
F 5 HOH 87 212 114 HOH HOH A .
F 5 HOH 88 213 115 HOH HOH A .
F 5 HOH 89 214 116 HOH HOH A .
F 5 HOH 90 215 117 HOH HOH A .
F 5 HOH 91 216 119 HOH HOH A .
F 5 HOH 92 217 120 HOH HOH A .
#
_pdbx_molecule_features.prd_id PRD_000635
_pdbx_molecule_features.name 'AC-PY-E-N-NH2 TRIPEPTIDE MIMIC'
_pdbx_molecule_features.type Peptide-like
_pdbx_molecule_features.class Inhibitor
_pdbx_molecule_features.details ?
#
_pdbx_molecule.instance_id 1
_pdbx_molecule.prd_id PRD_000635
_pdbx_molecule.asym_id B
#
loop_
_pdbx_struct_assembly.id
_pdbx_struct_assembly.details
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
1 author_defined_assembly ? monomeric 1
2 software_defined_assembly PISA dimeric 2
#
loop_
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
_pdbx_struct_assembly_gen.asym_id_list
1 1 A,B,C,D,E,F
2 1,2 A,B,C,D,E,F
#
loop_
_pdbx_struct_assembly_prop.biol_id
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_assembly_prop.details
2 'ABSA (A^2)' 2790 ?
2 MORE -59 ?
2 'SSA (A^2)' 10210 ?
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 7_645 y+1,x-1,-z 0.0000000000 1.0000000000 0.0000000000 41.8730000000 1.0000000000 0.0000000000
0.0000000000 -41.8730000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
#
_pdbx_struct_special_symmetry.id 1
_pdbx_struct_special_symmetry.PDB_model_num 1
_pdbx_struct_special_symmetry.auth_asym_id A
_pdbx_struct_special_symmetry.auth_comp_id HOH
_pdbx_struct_special_symmetry.auth_seq_id 209
_pdbx_struct_special_symmetry.PDB_ins_code ?
_pdbx_struct_special_symmetry.label_asym_id F
_pdbx_struct_special_symmetry.label_comp_id HOH
_pdbx_struct_special_symmetry.label_seq_id .
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2010-03-02
2 'Structure model' 1 1 2011-07-13
3 'Structure model' 1 2 2012-12-12
4 'Structure model' 1 3 2023-09-06
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Atomic model'
2 2 'Structure model' 'Database references'
3 2 'Structure model' 'Derived calculations'
4 2 'Structure model' 'Non-polymer description'
5 2 'Structure model' 'Structure summary'
6 2 'Structure model' 'Version format compliance'
7 3 'Structure model' Other
8 4 'Structure model' 'Data collection'
9 4 'Structure model' 'Database references'
10 4 'Structure model' 'Derived calculations'
11 4 'Structure model' 'Refinement description'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' chem_comp_atom
2 4 'Structure model' chem_comp_bond
3 4 'Structure model' database_2
4 4 'Structure model' pdbx_initial_refinement_model
5 4 'Structure model' struct_ref_seq_dif
6 4 'Structure model' struct_site
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_database_2.pdbx_DOI'
2 4 'Structure model' '_database_2.pdbx_database_accession'
3 4 'Structure model' '_struct_ref_seq_dif.details'
4 4 'Structure model' '_struct_site.pdbx_auth_asym_id'
5 4 'Structure model' '_struct_site.pdbx_auth_comp_id'
6 4 'Structure model' '_struct_site.pdbx_auth_seq_id'
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
CrystalClear 'data collection' . ? 1
MOLREP phasing . ? 2
CNS refinement . ? 3
HKL-2000 'data reduction' . ? 4
HKL-2000 'data scaling' . ? 5
#
_pdbx_validate_symm_contact.id 1
_pdbx_validate_symm_contact.PDB_model_num 1
_pdbx_validate_symm_contact.auth_atom_id_1 O
_pdbx_validate_symm_contact.auth_asym_id_1 A
_pdbx_validate_symm_contact.auth_comp_id_1 HOH
_pdbx_validate_symm_contact.auth_seq_id_1 178
_pdbx_validate_symm_contact.PDB_ins_code_1 ?
_pdbx_validate_symm_contact.label_alt_id_1 ?
_pdbx_validate_symm_contact.site_symmetry_1 1_555
_pdbx_validate_symm_contact.auth_atom_id_2 O
_pdbx_validate_symm_contact.auth_asym_id_2 A
_pdbx_validate_symm_contact.auth_comp_id_2 HOH
_pdbx_validate_symm_contact.auth_seq_id_2 178
_pdbx_validate_symm_contact.PDB_ins_code_2 ?
_pdbx_validate_symm_contact.label_alt_id_2 ?
_pdbx_validate_symm_contact.site_symmetry_2 7_555
_pdbx_validate_symm_contact.dist 1.85
#
loop_
_pdbx_validate_torsion.id
_pdbx_validate_torsion.PDB_model_num
_pdbx_validate_torsion.auth_comp_id
_pdbx_validate_torsion.auth_asym_id
_pdbx_validate_torsion.auth_seq_id
_pdbx_validate_torsion.PDB_ins_code
_pdbx_validate_torsion.label_alt_id
_pdbx_validate_torsion.phi
_pdbx_validate_torsion.psi
1 1 TRP A 121 ? ? -125.48 -73.37
2 1 VAL A 122 ? ? -126.19 -50.44
#
_pdbx_validate_chiral.id 1
_pdbx_validate_chiral.PDB_model_num 1
_pdbx_validate_chiral.auth_atom_id C8
_pdbx_validate_chiral.label_alt_id ?
_pdbx_validate_chiral.auth_asym_id A
_pdbx_validate_chiral.auth_comp_id YEN
_pdbx_validate_chiral.auth_seq_id 1
_pdbx_validate_chiral.PDB_ins_code ?
_pdbx_validate_chiral.details 'WRONG HAND'
_pdbx_validate_chiral.omega .
#
loop_
_pdbx_unobs_or_zero_occ_residues.id
_pdbx_unobs_or_zero_occ_residues.PDB_model_num
_pdbx_unobs_or_zero_occ_residues.polymer_flag
_pdbx_unobs_or_zero_occ_residues.occupancy_flag
_pdbx_unobs_or_zero_occ_residues.auth_asym_id
_pdbx_unobs_or_zero_occ_residues.auth_comp_id
_pdbx_unobs_or_zero_occ_residues.auth_seq_id
_pdbx_unobs_or_zero_occ_residues.PDB_ins_code
_pdbx_unobs_or_zero_occ_residues.label_asym_id
_pdbx_unobs_or_zero_occ_residues.label_comp_id
_pdbx_unobs_or_zero_occ_residues.label_seq_id
1 1 Y 1 A ILE 53 ? A ILE 1
2 1 Y 1 A GLU 54 ? A GLU 2
3 1 Y 1 A MET 55 ? A MET 3
4 1 Y 1 A GLN 156 ? A GLN 104
5 1 Y 1 A GLN 157 ? A GLN 105
6 1 Y 1 A PRO 158 ? A PRO 106
7 1 Y 1 A THR 159 ? A THR 107
8 1 Y 1 A TYR 160 ? A TYR 108
9 1 Y 1 A VAL 161 ? A VAL 109
10 1 Y 1 A GLN 162 ? A GLN 110
11 1 Y 1 A ALA 163 ? A ALA 111
12 1 Y 1 A HIS 164 ? A HIS 112
13 1 Y 1 A HIS 165 ? A HIS 113
14 1 Y 1 A HIS 166 ? A HIS 114
15 1 Y 1 A HIS 167 ? A HIS 115
16 1 Y 1 A HIS 168 ? A HIS 116
17 1 Y 1 A HIS 169 ? A HIS 117
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
ALA N N N N 1
ALA CA C N S 2
ALA C C N N 3
ALA O O N N 4
ALA CB C N N 5
ALA OXT O N N 6
ALA H H N N 7
ALA H2 H N N 8
ALA HA H N N 9
ALA HB1 H N N 10
ALA HB2 H N N 11
ALA HB3 H N N 12
ALA HXT H N N 13
ARG N N N N 14
ARG CA C N S 15
ARG C C N N 16
ARG O O N N 17
ARG CB C N N 18
ARG CG C N N 19
ARG CD C N N 20
ARG NE N N N 21
ARG CZ C N N 22
ARG NH1 N N N 23
ARG NH2 N N N 24
ARG OXT O N N 25
ARG H H N N 26
ARG H2 H N N 27
ARG HA H N N 28
ARG HB2 H N N 29
ARG HB3 H N N 30
ARG HG2 H N N 31
ARG HG3 H N N 32
ARG HD2 H N N 33
ARG HD3 H N N 34
ARG HE H N N 35
ARG HH11 H N N 36
ARG HH12 H N N 37
ARG HH21 H N N 38
ARG HH22 H N N 39
ARG HXT H N N 40
ASN N N N N 41
ASN CA C N S 42
ASN C C N N 43
ASN O O N N 44
ASN CB C N N 45
ASN CG C N N 46
ASN OD1 O N N 47
ASN ND2 N N N 48
ASN OXT O N N 49
ASN H H N N 50
ASN H2 H N N 51
ASN HA H N N 52
ASN HB2 H N N 53
ASN HB3 H N N 54
ASN HD21 H N N 55
ASN HD22 H N N 56
ASN HXT H N N 57
ASP N N N N 58
ASP CA C N S 59
ASP C C N N 60
ASP O O N N 61
ASP CB C N N 62
ASP CG C N N 63
ASP OD1 O N N 64
ASP OD2 O N N 65
ASP OXT O N N 66
ASP H H N N 67
ASP H2 H N N 68
ASP HA H N N 69
ASP HB2 H N N 70
ASP HB3 H N N 71
ASP HD2 H N N 72
ASP HXT H N N 73
CL CL CL N N 74
GLN N N N N 75
GLN CA C N S 76
GLN C C N N 77
GLN O O N N 78
GLN CB C N N 79
GLN CG C N N 80
GLN CD C N N 81
GLN OE1 O N N 82
GLN NE2 N N N 83
GLN OXT O N N 84
GLN H H N N 85
GLN H2 H N N 86
GLN HA H N N 87
GLN HB2 H N N 88
GLN HB3 H N N 89
GLN HG2 H N N 90
GLN HG3 H N N 91
GLN HE21 H N N 92
GLN HE22 H N N 93
GLN HXT H N N 94
GLU N N N N 95
GLU CA C N S 96
GLU C C N N 97
GLU O O N N 98
GLU CB C N N 99
GLU CG C N N 100
GLU CD C N N 101
GLU OE1 O N N 102
GLU OE2 O N N 103
GLU OXT O N N 104
GLU H H N N 105
GLU H2 H N N 106
GLU HA H N N 107
GLU HB2 H N N 108
GLU HB3 H N N 109
GLU HG2 H N N 110
GLU HG3 H N N 111
GLU HE2 H N N 112
GLU HXT H N N 113
GLY N N N N 114
GLY CA C N N 115
GLY C C N N 116
GLY O O N N 117
GLY OXT O N N 118
GLY H H N N 119
GLY H2 H N N 120
GLY HA2 H N N 121
GLY HA3 H N N 122
GLY HXT H N N 123
HIS N N N N 124
HIS CA C N S 125
HIS C C N N 126
HIS O O N N 127
HIS CB C N N 128
HIS CG C Y N 129
HIS ND1 N Y N 130
HIS CD2 C Y N 131
HIS CE1 C Y N 132
HIS NE2 N Y N 133
HIS OXT O N N 134
HIS H H N N 135
HIS H2 H N N 136
HIS HA H N N 137
HIS HB2 H N N 138
HIS HB3 H N N 139
HIS HD1 H N N 140
HIS HD2 H N N 141
HIS HE1 H N N 142
HIS HE2 H N N 143
HIS HXT H N N 144
HOH O O N N 145
HOH H1 H N N 146
HOH H2 H N N 147
ILE N N N N 148
ILE CA C N S 149
ILE C C N N 150
ILE O O N N 151
ILE CB C N S 152
ILE CG1 C N N 153
ILE CG2 C N N 154
ILE CD1 C N N 155
ILE OXT O N N 156
ILE H H N N 157
ILE H2 H N N 158
ILE HA H N N 159
ILE HB H N N 160
ILE HG12 H N N 161
ILE HG13 H N N 162
ILE HG21 H N N 163
ILE HG22 H N N 164
ILE HG23 H N N 165
ILE HD11 H N N 166
ILE HD12 H N N 167
ILE HD13 H N N 168
ILE HXT H N N 169
LEU N N N N 170
LEU CA C N S 171
LEU C C N N 172
LEU O O N N 173
LEU CB C N N 174
LEU CG C N N 175
LEU CD1 C N N 176
LEU CD2 C N N 177
LEU OXT O N N 178
LEU H H N N 179
LEU H2 H N N 180
LEU HA H N N 181
LEU HB2 H N N 182
LEU HB3 H N N 183
LEU HG H N N 184
LEU HD11 H N N 185
LEU HD12 H N N 186
LEU HD13 H N N 187
LEU HD21 H N N 188
LEU HD22 H N N 189
LEU HD23 H N N 190
LEU HXT H N N 191
LYS N N N N 192
LYS CA C N S 193
LYS C C N N 194
LYS O O N N 195
LYS CB C N N 196
LYS CG C N N 197
LYS CD C N N 198
LYS CE C N N 199
LYS NZ N N N 200
LYS OXT O N N 201
LYS H H N N 202
LYS H2 H N N 203
LYS HA H N N 204
LYS HB2 H N N 205
LYS HB3 H N N 206
LYS HG2 H N N 207
LYS HG3 H N N 208
LYS HD2 H N N 209
LYS HD3 H N N 210
LYS HE2 H N N 211
LYS HE3 H N N 212
LYS HZ1 H N N 213
LYS HZ2 H N N 214
LYS HZ3 H N N 215
LYS HXT H N N 216
MET N N N N 217
MET CA C N S 218
MET C C N N 219
MET O O N N 220
MET CB C N N 221
MET CG C N N 222
MET SD S N N 223
MET CE C N N 224
MET OXT O N N 225
MET H H N N 226
MET H2 H N N 227
MET HA H N N 228
MET HB2 H N N 229
MET HB3 H N N 230
MET HG2 H N N 231
MET HG3 H N N 232
MET HE1 H N N 233
MET HE2 H N N 234
MET HE3 H N N 235
MET HXT H N N 236
MG MG MG N N 237
PHE N N N N 238
PHE CA C N S 239
PHE C C N N 240
PHE O O N N 241
PHE CB C N N 242
PHE CG C Y N 243
PHE CD1 C Y N 244
PHE CD2 C Y N 245
PHE CE1 C Y N 246
PHE CE2 C Y N 247
PHE CZ C Y N 248
PHE OXT O N N 249
PHE H H N N 250
PHE H2 H N N 251
PHE HA H N N 252
PHE HB2 H N N 253
PHE HB3 H N N 254
PHE HD1 H N N 255
PHE HD2 H N N 256
PHE HE1 H N N 257
PHE HE2 H N N 258
PHE HZ H N N 259
PHE HXT H N N 260
PRO N N N N 261
PRO CA C N S 262
PRO C C N N 263
PRO O O N N 264
PRO CB C N N 265
PRO CG C N N 266
PRO CD C N N 267
PRO OXT O N N 268
PRO H H N N 269
PRO HA H N N 270
PRO HB2 H N N 271
PRO HB3 H N N 272
PRO HG2 H N N 273
PRO HG3 H N N 274
PRO HD2 H N N 275
PRO HD3 H N N 276
PRO HXT H N N 277
SER N N N N 278
SER CA C N S 279
SER C C N N 280
SER O O N N 281
SER CB C N N 282
SER OG O N N 283
SER OXT O N N 284
SER H H N N 285
SER H2 H N N 286
SER HA H N N 287
SER HB2 H N N 288
SER HB3 H N N 289
SER HG H N N 290
SER HXT H N N 291
THR N N N N 292
THR CA C N S 293
THR C C N N 294
THR O O N N 295
THR CB C N R 296
THR OG1 O N N 297
THR CG2 C N N 298
THR OXT O N N 299
THR H H N N 300
THR H2 H N N 301
THR HA H N N 302
THR HB H N N 303
THR HG1 H N N 304
THR HG21 H N N 305
THR HG22 H N N 306
THR HG23 H N N 307
THR HXT H N N 308
TRP N N N N 309
TRP CA C N S 310
TRP C C N N 311
TRP O O N N 312
TRP CB C N N 313
TRP CG C Y N 314
TRP CD1 C Y N 315
TRP CD2 C Y N 316
TRP NE1 N Y N 317
TRP CE2 C Y N 318
TRP CE3 C Y N 319
TRP CZ2 C Y N 320
TRP CZ3 C Y N 321
TRP CH2 C Y N 322
TRP OXT O N N 323
TRP H H N N 324
TRP H2 H N N 325
TRP HA H N N 326
TRP HB2 H N N 327
TRP HB3 H N N 328
TRP HD1 H N N 329
TRP HE1 H N N 330
TRP HE3 H N N 331
TRP HZ2 H N N 332
TRP HZ3 H N N 333
TRP HH2 H N N 334
TRP HXT H N N 335
TYR N N N N 336
TYR CA C N S 337
TYR C C N N 338
TYR O O N N 339
TYR CB C N N 340
TYR CG C Y N 341
TYR CD1 C Y N 342
TYR CD2 C Y N 343
TYR CE1 C Y N 344
TYR CE2 C Y N 345
TYR CZ C Y N 346
TYR OH O N N 347
TYR OXT O N N 348
TYR H H N N 349
TYR H2 H N N 350
TYR HA H N N 351
TYR HB2 H N N 352
TYR HB3 H N N 353
TYR HD1 H N N 354
TYR HD2 H N N 355
TYR HE1 H N N 356
TYR HE2 H N N 357
TYR HH H N N 358
TYR HXT H N N 359
VAL N N N N 360
VAL CA C N S 361
VAL C C N N 362
VAL O O N N 363
VAL CB C N N 364
VAL CG1 C N N 365
VAL CG2 C N N 366
VAL OXT O N N 367
VAL H H N N 368
VAL H2 H N N 369
VAL HA H N N 370
VAL HB H N N 371
VAL HG11 H N N 372
VAL HG12 H N N 373
VAL HG13 H N N 374
VAL HG21 H N N 375
VAL HG22 H N N 376
VAL HG23 H N N 377
VAL HXT H N N 378
YEN C1 C Y N 379
YEN C2 C Y N 380
YEN C3 C Y N 381
YEN C4 C Y N 382
YEN C5 C Y N 383
YEN C6 C Y N 384
YEN O1 O N N 385
YEN P1 P N N 386
YEN O2 O N N 387
YEN O3 O N N 388
YEN O4 O N N 389
YEN C7 C N N 390
YEN C8 C N S 391
YEN C9 C N N 392
YEN O5 O N N 393
YEN C10 C N N 394
YEN C11 C N N 395
YEN N1 N N N 396
YEN C12 C N N 397
YEN O7 O N N 398
YEN N2 N N N 399
YEN C13 C N S 400
YEN C14 C N N 401
YEN O8 O N N 402
YEN C15 C N N 403
YEN C16 C N N 404
YEN C17 C N N 405
YEN O9 O N N 406
YEN O10 O N N 407
YEN N3 N N N 408
YEN C18 C N S 409
YEN C19 C N N 410
YEN O12 O N N 411
YEN C20 C N N 412
YEN C21 C N N 413
YEN O13 O N N 414
YEN N4 N N N 415
YEN N5 N N N 416
YEN H1 H N N 417
YEN H2 H N N 418
YEN H3 H N N 419
YEN H4 H N N 420
YEN H5 H N N 421
YEN H6 H N N 422
YEN H7 H N N 423
YEN H8 H N N 424
YEN H9 H N N 425
YEN H11 H N N 426
YEN H12 H N N 427
YEN H13 H N N 428
YEN H14 H N N 429
YEN H15 H N N 430
YEN H16 H N N 431
YEN H17 H N N 432
YEN H19 H N N 433
YEN H20 H N N 434
YEN H21 H N N 435
YEN H22 H N N 436
YEN H23 H N N 437
YEN H24 H N N 438
YEN H26 H N N 439
YEN H28 H N N 440
YEN H29 H N N 441
YEN H30 H N N 442
YEN H31 H N N 443
YEN H32 H N N 444
YEN H34 H N N 445
YEN H35 H N N 446
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ALA N CA sing N N 1
ALA N H sing N N 2
ALA N H2 sing N N 3
ALA CA C sing N N 4
ALA CA CB sing N N 5
ALA CA HA sing N N 6
ALA C O doub N N 7
ALA C OXT sing N N 8
ALA CB HB1 sing N N 9
ALA CB HB2 sing N N 10
ALA CB HB3 sing N N 11
ALA OXT HXT sing N N 12
ARG N CA sing N N 13
ARG N H sing N N 14
ARG N H2 sing N N 15
ARG CA C sing N N 16
ARG CA CB sing N N 17
ARG CA HA sing N N 18
ARG C O doub N N 19
ARG C OXT sing N N 20
ARG CB CG sing N N 21
ARG CB HB2 sing N N 22
ARG CB HB3 sing N N 23
ARG CG CD sing N N 24
ARG CG HG2 sing N N 25
ARG CG HG3 sing N N 26
ARG CD NE sing N N 27
ARG CD HD2 sing N N 28
ARG CD HD3 sing N N 29
ARG NE CZ sing N N 30
ARG NE HE sing N N 31
ARG CZ NH1 sing N N 32
ARG CZ NH2 doub N N 33
ARG NH1 HH11 sing N N 34
ARG NH1 HH12 sing N N 35
ARG NH2 HH21 sing N N 36
ARG NH2 HH22 sing N N 37
ARG OXT HXT sing N N 38
ASN N CA sing N N 39
ASN N H sing N N 40
ASN N H2 sing N N 41
ASN CA C sing N N 42
ASN CA CB sing N N 43
ASN CA HA sing N N 44
ASN C O doub N N 45
ASN C OXT sing N N 46
ASN CB CG sing N N 47
ASN CB HB2 sing N N 48
ASN CB HB3 sing N N 49
ASN CG OD1 doub N N 50
ASN CG ND2 sing N N 51
ASN ND2 HD21 sing N N 52
ASN ND2 HD22 sing N N 53
ASN OXT HXT sing N N 54
ASP N CA sing N N 55
ASP N H sing N N 56
ASP N H2 sing N N 57
ASP CA C sing N N 58
ASP CA CB sing N N 59
ASP CA HA sing N N 60
ASP C O doub N N 61
ASP C OXT sing N N 62
ASP CB CG sing N N 63
ASP CB HB2 sing N N 64
ASP CB HB3 sing N N 65
ASP CG OD1 doub N N 66
ASP CG OD2 sing N N 67
ASP OD2 HD2 sing N N 68
ASP OXT HXT sing N N 69
GLN N CA sing N N 70
GLN N H sing N N 71
GLN N H2 sing N N 72
GLN CA C sing N N 73
GLN CA CB sing N N 74
GLN CA HA sing N N 75
GLN C O doub N N 76
GLN C OXT sing N N 77
GLN CB CG sing N N 78
GLN CB HB2 sing N N 79
GLN CB HB3 sing N N 80
GLN CG CD sing N N 81
GLN CG HG2 sing N N 82
GLN CG HG3 sing N N 83
GLN CD OE1 doub N N 84
GLN CD NE2 sing N N 85
GLN NE2 HE21 sing N N 86
GLN NE2 HE22 sing N N 87
GLN OXT HXT sing N N 88
GLU N CA sing N N 89
GLU N H sing N N 90
GLU N H2 sing N N 91
GLU CA C sing N N 92
GLU CA CB sing N N 93
GLU CA HA sing N N 94
GLU C O doub N N 95
GLU C OXT sing N N 96
GLU CB CG sing N N 97
GLU CB HB2 sing N N 98
GLU CB HB3 sing N N 99
GLU CG CD sing N N 100
GLU CG HG2 sing N N 101
GLU CG HG3 sing N N 102
GLU CD OE1 doub N N 103
GLU CD OE2 sing N N 104
GLU OE2 HE2 sing N N 105
GLU OXT HXT sing N N 106
GLY N CA sing N N 107
GLY N H sing N N 108
GLY N H2 sing N N 109
GLY CA C sing N N 110
GLY CA HA2 sing N N 111
GLY CA HA3 sing N N 112
GLY C O doub N N 113
GLY C OXT sing N N 114
GLY OXT HXT sing N N 115
HIS N CA sing N N 116
HIS N H sing N N 117
HIS N H2 sing N N 118
HIS CA C sing N N 119
HIS CA CB sing N N 120
HIS CA HA sing N N 121
HIS C O doub N N 122
HIS C OXT sing N N 123
HIS CB CG sing N N 124
HIS CB HB2 sing N N 125
HIS CB HB3 sing N N 126
HIS CG ND1 sing Y N 127
HIS CG CD2 doub Y N 128
HIS ND1 CE1 doub Y N 129
HIS ND1 HD1 sing N N 130
HIS CD2 NE2 sing Y N 131
HIS CD2 HD2 sing N N 132
HIS CE1 NE2 sing Y N 133
HIS CE1 HE1 sing N N 134
HIS NE2 HE2 sing N N 135
HIS OXT HXT sing N N 136
HOH O H1 sing N N 137
HOH O H2 sing N N 138
ILE N CA sing N N 139
ILE N H sing N N 140
ILE N H2 sing N N 141
ILE CA C sing N N 142
ILE CA CB sing N N 143
ILE CA HA sing N N 144
ILE C O doub N N 145
ILE C OXT sing N N 146
ILE CB CG1 sing N N 147
ILE CB CG2 sing N N 148
ILE CB HB sing N N 149
ILE CG1 CD1 sing N N 150
ILE CG1 HG12 sing N N 151
ILE CG1 HG13 sing N N 152
ILE CG2 HG21 sing N N 153
ILE CG2 HG22 sing N N 154
ILE CG2 HG23 sing N N 155
ILE CD1 HD11 sing N N 156
ILE CD1 HD12 sing N N 157
ILE CD1 HD13 sing N N 158
ILE OXT HXT sing N N 159
LEU N CA sing N N 160
LEU N H sing N N 161
LEU N H2 sing N N 162
LEU CA C sing N N 163
LEU CA CB sing N N 164
LEU CA HA sing N N 165
LEU C O doub N N 166
LEU C OXT sing N N 167
LEU CB CG sing N N 168
LEU CB HB2 sing N N 169
LEU CB HB3 sing N N 170
LEU CG CD1 sing N N 171
LEU CG CD2 sing N N 172
LEU CG HG sing N N 173
LEU CD1 HD11 sing N N 174
LEU CD1 HD12 sing N N 175
LEU CD1 HD13 sing N N 176
LEU CD2 HD21 sing N N 177
LEU CD2 HD22 sing N N 178
LEU CD2 HD23 sing N N 179
LEU OXT HXT sing N N 180
LYS N CA sing N N 181
LYS N H sing N N 182
LYS N H2 sing N N 183
LYS CA C sing N N 184
LYS CA CB sing N N 185
LYS CA HA sing N N 186
LYS C O doub N N 187
LYS C OXT sing N N 188
LYS CB CG sing N N 189
LYS CB HB2 sing N N 190
LYS CB HB3 sing N N 191
LYS CG CD sing N N 192
LYS CG HG2 sing N N 193
LYS CG HG3 sing N N 194
LYS CD CE sing N N 195
LYS CD HD2 sing N N 196
LYS CD HD3 sing N N 197
LYS CE NZ sing N N 198
LYS CE HE2 sing N N 199
LYS CE HE3 sing N N 200
LYS NZ HZ1 sing N N 201
LYS NZ HZ2 sing N N 202
LYS NZ HZ3 sing N N 203
LYS OXT HXT sing N N 204
MET N CA sing N N 205
MET N H sing N N 206
MET N H2 sing N N 207
MET CA C sing N N 208
MET CA CB sing N N 209
MET CA HA sing N N 210
MET C O doub N N 211
MET C OXT sing N N 212
MET CB CG sing N N 213
MET CB HB2 sing N N 214
MET CB HB3 sing N N 215
MET CG SD sing N N 216
MET CG HG2 sing N N 217
MET CG HG3 sing N N 218
MET SD CE sing N N 219
MET CE HE1 sing N N 220
MET CE HE2 sing N N 221
MET CE HE3 sing N N 222
MET OXT HXT sing N N 223
PHE N CA sing N N 224
PHE N H sing N N 225
PHE N H2 sing N N 226
PHE CA C sing N N 227
PHE CA CB sing N N 228
PHE CA HA sing N N 229
PHE C O doub N N 230
PHE C OXT sing N N 231
PHE CB CG sing N N 232
PHE CB HB2 sing N N 233
PHE CB HB3 sing N N 234
PHE CG CD1 doub Y N 235
PHE CG CD2 sing Y N 236
PHE CD1 CE1 sing Y N 237
PHE CD1 HD1 sing N N 238
PHE CD2 CE2 doub Y N 239
PHE CD2 HD2 sing N N 240
PHE CE1 CZ doub Y N 241
PHE CE1 HE1 sing N N 242
PHE CE2 CZ sing Y N 243
PHE CE2 HE2 sing N N 244
PHE CZ HZ sing N N 245
PHE OXT HXT sing N N 246
PRO N CA sing N N 247
PRO N CD sing N N 248
PRO N H sing N N 249
PRO CA C sing N N 250
PRO CA CB sing N N 251
PRO CA HA sing N N 252
PRO C O doub N N 253
PRO C OXT sing N N 254
PRO CB CG sing N N 255
PRO CB HB2 sing N N 256
PRO CB HB3 sing N N 257
PRO CG CD sing N N 258
PRO CG HG2 sing N N 259
PRO CG HG3 sing N N 260
PRO CD HD2 sing N N 261
PRO CD HD3 sing N N 262
PRO OXT HXT sing N N 263
SER N CA sing N N 264
SER N H sing N N 265
SER N H2 sing N N 266
SER CA C sing N N 267
SER CA CB sing N N 268
SER CA HA sing N N 269
SER C O doub N N 270
SER C OXT sing N N 271
SER CB OG sing N N 272
SER CB HB2 sing N N 273
SER CB HB3 sing N N 274
SER OG HG sing N N 275
SER OXT HXT sing N N 276
THR N CA sing N N 277
THR N H sing N N 278
THR N H2 sing N N 279
THR CA C sing N N 280
THR CA CB sing N N 281
THR CA HA sing N N 282
THR C O doub N N 283
THR C OXT sing N N 284
THR CB OG1 sing N N 285
THR CB CG2 sing N N 286
THR CB HB sing N N 287
THR OG1 HG1 sing N N 288
THR CG2 HG21 sing N N 289
THR CG2 HG22 sing N N 290
THR CG2 HG23 sing N N 291
THR OXT HXT sing N N 292
TRP N CA sing N N 293
TRP N H sing N N 294
TRP N H2 sing N N 295
TRP CA C sing N N 296
TRP CA CB sing N N 297
TRP CA HA sing N N 298
TRP C O doub N N 299
TRP C OXT sing N N 300
TRP CB CG sing N N 301
TRP CB HB2 sing N N 302
TRP CB HB3 sing N N 303
TRP CG CD1 doub Y N 304
TRP CG CD2 sing Y N 305
TRP CD1 NE1 sing Y N 306
TRP CD1 HD1 sing N N 307
TRP CD2 CE2 doub Y N 308
TRP CD2 CE3 sing Y N 309
TRP NE1 CE2 sing Y N 310
TRP NE1 HE1 sing N N 311
TRP CE2 CZ2 sing Y N 312
TRP CE3 CZ3 doub Y N 313
TRP CE3 HE3 sing N N 314
TRP CZ2 CH2 doub Y N 315
TRP CZ2 HZ2 sing N N 316
TRP CZ3 CH2 sing Y N 317
TRP CZ3 HZ3 sing N N 318
TRP CH2 HH2 sing N N 319
TRP OXT HXT sing N N 320
TYR N CA sing N N 321
TYR N H sing N N 322
TYR N H2 sing N N 323
TYR CA C sing N N 324
TYR CA CB sing N N 325
TYR CA HA sing N N 326
TYR C O doub N N 327
TYR C OXT sing N N 328
TYR CB CG sing N N 329
TYR CB HB2 sing N N 330
TYR CB HB3 sing N N 331
TYR CG CD1 doub Y N 332
TYR CG CD2 sing Y N 333
TYR CD1 CE1 sing Y N 334
TYR CD1 HD1 sing N N 335
TYR CD2 CE2 doub Y N 336
TYR CD2 HD2 sing N N 337
TYR CE1 CZ doub Y N 338
TYR CE1 HE1 sing N N 339
TYR CE2 CZ sing Y N 340
TYR CE2 HE2 sing N N 341
TYR CZ OH sing N N 342
TYR OH HH sing N N 343
TYR OXT HXT sing N N 344
VAL N CA sing N N 345
VAL N H sing N N 346
VAL N H2 sing N N 347
VAL CA C sing N N 348
VAL CA CB sing N N 349
VAL CA HA sing N N 350
VAL C O doub N N 351
VAL C OXT sing N N 352
VAL CB CG1 sing N N 353
VAL CB CG2 sing N N 354
VAL CB HB sing N N 355
VAL CG1 HG11 sing N N 356
VAL CG1 HG12 sing N N 357
VAL CG1 HG13 sing N N 358
VAL CG2 HG21 sing N N 359
VAL CG2 HG22 sing N N 360
VAL CG2 HG23 sing N N 361
VAL OXT HXT sing N N 362
YEN C1 C2 sing Y N 363
YEN C1 C6 doub Y N 364
YEN C1 H1 sing N N 365
YEN C2 C3 doub Y N 366
YEN C2 H2 sing N N 367
YEN C3 C4 sing Y N 368
YEN C3 O1 sing N N 369
YEN C4 C5 doub Y N 370
YEN C4 H3 sing N N 371
YEN C5 C6 sing Y N 372
YEN C5 H4 sing N N 373
YEN C6 C7 sing N N 374
YEN O1 P1 sing N N 375
YEN P1 O2 sing N N 376
YEN P1 O3 doub N N 377
YEN P1 O4 sing N N 378
YEN O2 H5 sing N N 379
YEN O4 H6 sing N N 380
YEN C7 C8 sing N N 381
YEN C7 H7 sing N N 382
YEN C7 H8 sing N N 383
YEN C8 C9 sing N N 384
YEN C8 C10 sing N N 385
YEN C8 H9 sing N N 386
YEN C9 O5 doub N N 387
YEN C9 N2 sing N N 388
YEN C10 C11 sing N N 389
YEN C10 H11 sing N N 390
YEN C10 H12 sing N N 391
YEN C11 N1 sing N N 392
YEN C11 O7 doub N N 393
YEN N1 C12 sing N N 394
YEN N1 H13 sing N N 395
YEN C12 H14 sing N N 396
YEN C12 H15 sing N N 397
YEN C12 H16 sing N N 398
YEN N2 C13 sing N N 399
YEN N2 H17 sing N N 400
YEN C13 C14 sing N N 401
YEN C13 C15 sing N N 402
YEN C13 H19 sing N N 403
YEN C14 O8 doub N N 404
YEN C14 N3 sing N N 405
YEN C15 C16 sing N N 406
YEN C15 H20 sing N N 407
YEN C15 H21 sing N N 408
YEN C16 C17 sing N N 409
YEN C16 H22 sing N N 410
YEN C16 H23 sing N N 411
YEN C17 O9 doub N N 412
YEN C17 O10 sing N N 413
YEN O10 H24 sing N N 414
YEN N3 C18 sing N N 415
YEN N3 H26 sing N N 416
YEN C18 C19 sing N N 417
YEN C18 C20 sing N N 418
YEN C18 H28 sing N N 419
YEN C19 O12 doub N N 420
YEN C19 N5 sing N N 421
YEN C20 C21 sing N N 422
YEN C20 H29 sing N N 423
YEN C20 H30 sing N N 424
YEN C21 O13 doub N N 425
YEN C21 N4 sing N N 426
YEN N4 H31 sing N N 427
YEN N4 H32 sing N N 428
YEN N5 H34 sing N N 429
YEN N5 H35 sing N N 430
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 'N-{(2S)-4-(methylamino)-4-oxo-2-[4-(phosphonooxy)benzyl]butanoyl}-L-alpha-glutamyl-L-aspartamide' YEN
3 'CHLORIDE ION' CL
4 'MAGNESIUM ION' MG
5 water HOH
#
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.accession_code 3C7I
_pdbx_initial_refinement_model.details 'pdb entry 3C7I'
#