HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 28-OCT-09 3KFW TITLE UNCHARACTERIZED PROTEIN RV0674 FROM MYCOBACTERIUM TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: X; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: MT0703, RV0674; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: BC-PSGX4(BC) KEYWDS STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, NEW YORK KEYWDS 2 SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, NYSGXRC, UNKNOWN KEYWDS 3 FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR U.A.RAMAGOPAL,R.TORO,S.K.BURLEY,S.C.ALMO,NEW YORK SGX RESEARCH CENTER AUTHOR 2 FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 4 10-FEB-21 3KFW 1 AUTHOR JRNL SEQADV LINK REVDAT 3 01-NOV-17 3KFW 1 REMARK REVDAT 2 13-JUL-11 3KFW 1 VERSN REVDAT 1 01-DEC-09 3KFW 0 JRNL AUTH U.A.RAMAGOPAL,R.TORO,S.K.BURLEY,S.C.ALMO JRNL TITL UNCHARACTERIZED PROTEIN RV0674 FROM MYCOBACTERIUM JRNL TITL 2 TUBERCULOSIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 10706 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 506 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 701 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.3130 REMARK 3 BIN FREE R VALUE SET COUNT : 37 REMARK 3 BIN FREE R VALUE : 0.4290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1787 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.06000 REMARK 3 B22 (A**2) : 1.06000 REMARK 3 B33 (A**2) : -2.13000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.451 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.306 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.266 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 26.892 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1832 ; 0.018 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2489 ; 1.789 ; 1.945 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 235 ; 6.748 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 80 ;34.594 ;21.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 294 ;20.174 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;24.159 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 280 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1397 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1165 ; 0.776 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1842 ; 1.443 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 667 ; 2.988 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 646 ; 4.448 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 3 X 80 REMARK 3 ORIGIN FOR THE GROUP (A): -23.3360 -38.0380 -11.3420 REMARK 3 T TENSOR REMARK 3 T11: 0.3337 T22: 0.4900 REMARK 3 T33: 0.2136 T12: 0.1639 REMARK 3 T13: -0.0821 T23: -0.2117 REMARK 3 L TENSOR REMARK 3 L11: 3.2191 L22: 4.8293 REMARK 3 L33: 9.7468 L12: 0.9099 REMARK 3 L13: 2.9463 L23: 2.0824 REMARK 3 S TENSOR REMARK 3 S11: -0.3394 S12: -0.0690 S13: 0.4236 REMARK 3 S21: 0.2959 S22: 0.1817 S23: -0.0562 REMARK 3 S31: -1.1517 S32: -0.5389 S33: 0.1577 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 81 X 160 REMARK 3 ORIGIN FOR THE GROUP (A): 2.1560 -14.8360 -2.9550 REMARK 3 T TENSOR REMARK 3 T11: 0.4315 T22: 0.3828 REMARK 3 T33: 0.4803 T12: 0.1564 REMARK 3 T13: -0.1850 T23: -0.0697 REMARK 3 L TENSOR REMARK 3 L11: 9.1969 L22: 2.6901 REMARK 3 L33: 2.4557 L12: 0.9047 REMARK 3 L13: 0.9514 L23: -2.0584 REMARK 3 S TENSOR REMARK 3 S11: 0.1605 S12: 1.1725 S13: 0.2066 REMARK 3 S21: -0.2461 S22: -0.0361 S23: -0.3660 REMARK 3 S31: 0.4379 S32: 0.2501 S33: -0.1244 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 161 X 236 REMARK 3 ORIGIN FOR THE GROUP (A): -12.6330 -33.2910 6.8170 REMARK 3 T TENSOR REMARK 3 T11: 0.5778 T22: 0.2647 REMARK 3 T33: 0.3868 T12: 0.0744 REMARK 3 T13: -0.2498 T23: -0.1185 REMARK 3 L TENSOR REMARK 3 L11: 3.9082 L22: 3.7173 REMARK 3 L33: 3.6903 L12: 2.4538 REMARK 3 L13: 2.1363 L23: 1.9818 REMARK 3 S TENSOR REMARK 3 S11: 0.1494 S12: 0.1629 S13: -0.5508 REMARK 3 S21: 0.4614 S22: -0.1985 S23: -0.2391 REMARK 3 S31: -0.0232 S32: -0.2440 S33: 0.0491 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS, U VALUES RESIDUAL ONLY REMARK 4 REMARK 4 3KFW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000055941. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10757 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 42.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 20.00 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : 0.10200 REMARK 200 FOR THE DATA SET : 37.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 15.00 REMARK 200 R MERGE FOR SHELL (I) : 0.52900 REMARK 200 R SYM FOR SHELL (I) : 0.62100 REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS HCL PH 8.5, 25% PEG 3350, REMARK 280 0.2M AMMONIUM ACETATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 42.69150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 42.69150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.21250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 42.69150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 42.69150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.21250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 42.69150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.69150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 40.21250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 42.69150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.69150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 40.21250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE X 2 REMARK 465 LEU X 237 REMARK 465 GLU X 238 REMARK 465 VAL X 239 REMARK 465 THR X 240 REMARK 465 GLU X 241 REMARK 465 GLY X 242 REMARK 465 HIS X 243 REMARK 465 HIS X 244 REMARK 465 HIS X 245 REMARK 465 HIS X 246 REMARK 465 HIS X 247 REMARK 465 HIS X 248 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS X 37 CG CD CE NZ REMARK 470 THR X 39 OG1 CG2 REMARK 470 THR X 40 OG1 CG2 REMARK 470 GLU X 76 OE1 OE2 REMARK 470 ARG X 81 CD NE CZ NH1 NH2 REMARK 470 GLU X 121 CG CD OE1 OE2 REMARK 470 VAL X 138 CG1 CG2 REMARK 470 ARG X 141 CZ NH1 NH2 REMARK 470 LEU X 236 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP X 137 N ALA X 140 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU X 4 CA - CB - CG ANGL. DEV. = 15.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU X 4 57.30 -99.85 REMARK 500 THR X 39 -80.44 -21.91 REMARK 500 ARG X 81 121.57 -35.63 REMARK 500 ARG X 120 168.80 170.06 REMARK 500 SER X 136 -129.74 69.43 REMARK 500 ASP X 137 -82.17 -65.21 REMARK 500 VAL X 138 -61.09 -13.66 REMARK 500 ALA X 204 -62.17 -19.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-13847B RELATED DB: TARGETDB DBREF 3KFW X 5 240 UNP O53782 O53782_MYCTU 5 240 SEQADV 3KFW MSE X 2 UNP O53782 EXPRESSION TAG SEQADV 3KFW SER X 3 UNP O53782 EXPRESSION TAG SEQADV 3KFW LEU X 4 UNP O53782 EXPRESSION TAG SEQADV 3KFW GLU X 241 UNP O53782 EXPRESSION TAG SEQADV 3KFW GLY X 242 UNP O53782 EXPRESSION TAG SEQADV 3KFW HIS X 243 UNP O53782 EXPRESSION TAG SEQADV 3KFW HIS X 244 UNP O53782 EXPRESSION TAG SEQADV 3KFW HIS X 245 UNP O53782 EXPRESSION TAG SEQADV 3KFW HIS X 246 UNP O53782 EXPRESSION TAG SEQADV 3KFW HIS X 247 UNP O53782 EXPRESSION TAG SEQADV 3KFW HIS X 248 UNP O53782 EXPRESSION TAG SEQRES 1 X 247 MSE SER LEU THR ALA ARG SER VAL VAL LEU SER VAL LEU SEQRES 2 X 247 LEU GLY ALA HIS PRO ALA TRP ALA THR ALA SER GLU LEU SEQRES 3 X 247 ILE GLN LEU THR ALA ASP PHE GLY ILE LYS GLU THR THR SEQRES 4 X 247 LEU ARG VAL ALA LEU THR ARG MSE VAL GLY ALA GLY ASP SEQRES 5 X 247 LEU VAL ARG SER ALA ASP GLY TYR ARG LEU SER ASP ARG SEQRES 6 X 247 LEU LEU ALA ARG GLN ARG ARG GLN ASP GLU ALA MSE ARG SEQRES 7 X 247 PRO ARG THR ARG ALA TRP HIS GLY ASN TRP HIS MSE LEU SEQRES 8 X 247 ILE VAL THR SER ILE GLY THR ASP ALA ARG THR ARG ALA SEQRES 9 X 247 ALA LEU ARG THR CYS MSE HIS HIS LYS ARG PHE GLY GLU SEQRES 10 X 247 LEU ARG GLU GLY VAL TRP MSE ARG PRO ASP ASN LEU ASP SEQRES 11 X 247 LEU ASP LEU GLU SER ASP VAL ALA ALA ARG VAL ARG MSE SEQRES 12 X 247 LEU THR ALA ARG ASP GLU ALA PRO ALA ASP LEU ALA GLY SEQRES 13 X 247 GLN LEU TRP ASP LEU SER GLY TRP THR GLU ALA GLY HIS SEQRES 14 X 247 ARG LEU LEU GLY ASP MSE ALA ALA ALA THR ASP MSE PRO SEQRES 15 X 247 GLY ARG PHE VAL VAL ALA ALA ALA MSE VAL ARG HIS LEU SEQRES 16 X 247 LEU THR ASP PRO MSE LEU PRO ALA GLU LEU LEU PRO ALA SEQRES 17 X 247 ASP TRP PRO GLY ALA GLY LEU ARG ALA ALA TYR HIS ASP SEQRES 18 X 247 PHE ALA THR ALA MSE ALA LYS ARG ARG ASP ALA THR GLN SEQRES 19 X 247 LEU LEU GLU VAL THR GLU GLY HIS HIS HIS HIS HIS HIS MODRES 3KFW MSE X 48 MET SELENOMETHIONINE MODRES 3KFW MSE X 78 MET SELENOMETHIONINE MODRES 3KFW MSE X 91 MET SELENOMETHIONINE MODRES 3KFW MSE X 111 MET SELENOMETHIONINE MODRES 3KFW MSE X 125 MET SELENOMETHIONINE MODRES 3KFW MSE X 144 MET SELENOMETHIONINE MODRES 3KFW MSE X 176 MET SELENOMETHIONINE MODRES 3KFW MSE X 182 MET SELENOMETHIONINE MODRES 3KFW MSE X 192 MET SELENOMETHIONINE MODRES 3KFW MSE X 201 MET SELENOMETHIONINE MODRES 3KFW MSE X 227 MET SELENOMETHIONINE HET MSE X 48 8 HET MSE X 78 8 HET MSE X 91 8 HET MSE X 111 8 HET MSE X 125 8 HET MSE X 144 8 HET MSE X 176 8 HET MSE X 182 8 HET MSE X 192 8 HET MSE X 201 8 HET MSE X 227 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 11(C5 H11 N O2 SE) HELIX 1 1 THR X 5 LEU X 15 1 11 HELIX 2 2 THR X 23 ALA X 32 1 10 HELIX 3 3 LYS X 37 ALA X 51 1 15 HELIX 4 4 SER X 64 ARG X 79 1 16 HELIX 5 5 ASP X 100 LYS X 114 1 15 HELIX 6 6 ASP X 137 ALA X 140 5 4 HELIX 7 7 ALA X 151 TRP X 160 1 10 HELIX 8 8 ASP X 161 ALA X 179 1 19 HELIX 9 9 ASP X 181 LEU X 197 1 17 HELIX 10 10 PRO X 203 LEU X 207 5 5 HELIX 11 11 PRO X 212 LEU X 236 1 25 SHEET 1 A 2 LEU X 54 SER X 57 0 SHEET 2 A 2 GLY X 60 LEU X 63 -1 O GLY X 60 N SER X 57 SHEET 1 B 4 GLY X 117 ARG X 120 0 SHEET 2 B 4 VAL X 123 PRO X 127 -1 O MSE X 125 N GLY X 117 SHEET 3 B 4 TRP X 89 VAL X 94 -1 N LEU X 92 O TRP X 124 SHEET 4 B 4 VAL X 142 ALA X 147 -1 O ALA X 147 N TRP X 89 LINK C ARG X 47 N MSE X 48 1555 1555 1.34 LINK C MSE X 48 N VAL X 49 1555 1555 1.35 LINK C ALA X 77 N MSE X 78 1555 1555 1.34 LINK C MSE X 78 N ARG X 79 1555 1555 1.33 LINK C HIS X 90 N MSE X 91 1555 1555 1.33 LINK C MSE X 91 N LEU X 92 1555 1555 1.31 LINK C CYS X 110 N MSE X 111 1555 1555 1.33 LINK C MSE X 111 N HIS X 112 1555 1555 1.34 LINK C TRP X 124 N MSE X 125 1555 1555 1.34 LINK C MSE X 125 N ARG X 126 1555 1555 1.32 LINK C ARG X 143 N MSE X 144 1555 1555 1.33 LINK C MSE X 144 N LEU X 145 1555 1555 1.33 LINK C ASP X 175 N MSE X 176 1555 1555 1.35 LINK C MSE X 176 N ALA X 177 1555 1555 1.33 LINK C ASP X 181 N MSE X 182 1555 1555 1.34 LINK C MSE X 182 N PRO X 183 1555 1555 1.35 LINK C ALA X 191 N MSE X 192 1555 1555 1.34 LINK C MSE X 192 N VAL X 193 1555 1555 1.33 LINK C PRO X 200 N MSE X 201 1555 1555 1.35 LINK C MSE X 201 N LEU X 202 1555 1555 1.34 LINK C ALA X 226 N MSE X 227 1555 1555 1.33 LINK C MSE X 227 N ALA X 228 1555 1555 1.33 CISPEP 1 HIS X 18 PRO X 19 0 10.73 CRYST1 85.383 85.383 80.425 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011712 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011712 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012434 0.00000