HEADER PROTEIN BINDING 28-OCT-09 3KG5 TITLE CRYSTAL STRUCTURE OF HUMAN IG-BETA HOMODIMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: B-CELL ANTIGEN RECEPTOR COMPLEX-ASSOCIATED PROTEIN BETA COMPND 3 CHAIN; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: EXTRACELLULAR DOMAIN; COMPND 6 SYNONYM: IG-BETA, B-CELL-SPECIFIC GLYCOPROTEIN B29, IMMUNOGLOBULIN- COMPND 7 ASSOCIATED B29 PROTEIN; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: B29, CD79B, IGB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CD79B, IG-BETA, BCR, IMMUNOGLOBULIN DOMAIN, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR S.RADAEV,P.D.SUN REVDAT 1 25-AUG-10 3KG5 0 JRNL AUTH S.RADAEV,Z.ZOU,P.TOLAR,K.NGUYEN,A.NGUYEN,P.D.KRUEGER, JRNL AUTH 2 N.STUTZMAN,S.PIERCE,P.D.SUN JRNL TITL STRUCTURAL AND FUNCTIONAL STUDIES OF IGALPHABETA AND ITS JRNL TITL 2 ASSEMBLY WITH THE B CELL ANTIGEN RECEPTOR. JRNL REF STRUCTURE V. 18 934 2010 JRNL REFN ISSN 0969-2126 JRNL PMID 20696394 JRNL DOI 10.1016/J.STR.2010.04.019 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 6407 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 358 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.31 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2070 REMARK 3 BIN FREE R VALUE : 0.3620 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1676 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 2 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 75.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3KG5 COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-NOV-09. REMARK 100 THE RCSB ID CODE IS RCSB055950. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6616 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 27.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07000 REMARK 200 FOR THE DATA SET : 55.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.31 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 28.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.33900 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.6M NA FORMATE, 100MM NA ACETATE, PH REMARK 280 4.0, VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 64.90000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.90000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 64.90000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.90000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 64.90000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 64.90000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 64.90000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 64.90000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 64.90000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 64.90000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 64.90000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 64.90000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 64.90000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 64.90000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 64.90000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 64.90000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 64.90000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 64.90000 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 97.35000 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 32.45000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 32.45000 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 97.35000 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 97.35000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 97.35000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 32.45000 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 32.45000 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 97.35000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 32.45000 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 97.35000 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 32.45000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 97.35000 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 32.45000 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 32.45000 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 32.45000 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 97.35000 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 32.45000 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 97.35000 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 97.35000 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 97.35000 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 32.45000 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 32.45000 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 97.35000 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 97.35000 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 32.45000 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 32.45000 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 32.45000 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 32.45000 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 97.35000 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 32.45000 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 97.35000 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 32.45000 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 97.35000 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 97.35000 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 97.35000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 26 REMARK 465 PRO A 27 REMARK 465 ALA A 28 REMARK 465 ALA A 29 REMARK 465 ARG A 30 REMARK 465 SER A 31 REMARK 465 GLU A 32 REMARK 465 ASP A 33 REMARK 465 ARG A 34 REMARK 465 TYR A 35 REMARK 465 ARG A 36 REMARK 465 ASN A 37 REMARK 465 PRO A 38 REMARK 465 LYS A 39 REMARK 465 GLY A 40 REMARK 465 SER A 41 REMARK 465 ALA A 42 REMARK 465 SER A 146 REMARK 465 THR A 147 REMARK 465 LEU A 148 REMARK 465 ALA A 149 REMARK 465 GLN A 150 REMARK 465 LEU A 151 REMARK 465 LYS A 152 REMARK 465 GLN A 153 REMARK 465 ARG A 154 REMARK 465 ASN A 155 REMARK 465 THR A 156 REMARK 465 LEU A 157 REMARK 465 LYS A 158 REMARK 465 ASP A 159 REMARK 465 VAL B 26 REMARK 465 PRO B 27 REMARK 465 ALA B 28 REMARK 465 ALA B 29 REMARK 465 ARG B 30 REMARK 465 SER B 31 REMARK 465 GLU B 32 REMARK 465 ASP B 33 REMARK 465 ARG B 34 REMARK 465 TYR B 35 REMARK 465 ARG B 36 REMARK 465 ASN B 37 REMARK 465 PRO B 38 REMARK 465 LYS B 39 REMARK 465 GLY B 40 REMARK 465 SER B 41 REMARK 465 ALA B 42 REMARK 465 SER B 146 REMARK 465 THR B 147 REMARK 465 LEU B 148 REMARK 465 ALA B 149 REMARK 465 GLN B 150 REMARK 465 LEU B 151 REMARK 465 LYS B 152 REMARK 465 GLN B 153 REMARK 465 ARG B 154 REMARK 465 ASN B 155 REMARK 465 THR B 156 REMARK 465 LEU B 157 REMARK 465 LYS B 158 REMARK 465 ASP B 159 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS B 43 CA - CB - SG ANGL. DEV. = 7.2 DEGREES REMARK 500 CYS B 65 CA - CB - SG ANGL. DEV. = 7.6 DEGREES REMARK 500 CYS B 126 CA - CB - SG ANGL. DEV. = 9.4 DEGREES REMARK 500 GLY B 144 N - CA - C ANGL. DEV. = 19.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 67 -146.46 -139.62 REMARK 500 SER A 71 19.13 53.96 REMARK 500 ASN A 73 93.53 37.14 REMARK 500 GLU A 84 179.54 -53.75 REMARK 500 PRO A 86 87.75 -48.28 REMARK 500 LYS A 93 138.98 -27.23 REMARK 500 ARG A 95 -0.26 -173.60 REMARK 500 GLN A 100 167.50 176.40 REMARK 500 ASN A 101 -157.21 -153.55 REMARK 500 ASN A 117 135.07 -35.98 REMARK 500 ASN A 127 -90.49 -52.37 REMARK 500 ASN A 128 -77.45 -44.38 REMARK 500 ARG B 57 124.35 -28.37 REMARK 500 PHE B 59 -142.21 -87.28 REMARK 500 MET B 67 -154.90 -167.62 REMARK 500 ASN B 73 99.52 55.01 REMARK 500 GLU B 84 152.64 -45.10 REMARK 500 PRO B 86 144.07 -36.03 REMARK 500 GLN B 88 128.29 -39.12 REMARK 500 GLU B 92 122.47 -38.12 REMARK 500 ARG B 95 -29.12 -148.45 REMARK 500 GLN B 100 126.17 179.52 REMARK 500 ASN B 101 -152.62 -108.80 REMARK 500 ILE B 112 119.60 -23.69 REMARK 500 GLU B 115 -2.03 -59.11 REMARK 500 ASN B 127 -70.90 -67.70 REMARK 500 ASN B 128 -82.08 -60.97 REMARK 500 THR B 129 -16.26 -49.10 REMARK 500 MET B 143 -179.53 -174.96 REMARK 500 REMARK 500 REMARK: NULL DBREF 3KG5 A 26 159 UNP P40259 CD79B_HUMAN 26 159 DBREF 3KG5 B 26 159 UNP P40259 CD79B_HUMAN 26 159 SEQRES 1 A 134 VAL PRO ALA ALA ARG SER GLU ASP ARG TYR ARG ASN PRO SEQRES 2 A 134 LYS GLY SER ALA CYS SER ARG ILE TRP GLN SER PRO ARG SEQRES 3 A 134 PHE ILE ALA ARG LYS ARG GLY PHE THR VAL LYS MET HIS SEQRES 4 A 134 CYS TYR MET ASN SER ALA SER GLY ASN VAL SER TRP LEU SEQRES 5 A 134 TRP LYS GLN GLU MET ASP GLU ASN PRO GLN GLN LEU LYS SEQRES 6 A 134 LEU GLU LYS GLY ARG MET GLU GLU SER GLN ASN GLU SER SEQRES 7 A 134 LEU ALA THR LEU THR ILE GLN GLY ILE ARG PHE GLU ASP SEQRES 8 A 134 ASN GLY ILE TYR PHE CYS GLN GLN LYS CYS ASN ASN THR SEQRES 9 A 134 SER GLU VAL TYR GLN GLY CYS GLY THR GLU LEU ARG VAL SEQRES 10 A 134 MET GLY PHE SER THR LEU ALA GLN LEU LYS GLN ARG ASN SEQRES 11 A 134 THR LEU LYS ASP SEQRES 1 B 134 VAL PRO ALA ALA ARG SER GLU ASP ARG TYR ARG ASN PRO SEQRES 2 B 134 LYS GLY SER ALA CYS SER ARG ILE TRP GLN SER PRO ARG SEQRES 3 B 134 PHE ILE ALA ARG LYS ARG GLY PHE THR VAL LYS MET HIS SEQRES 4 B 134 CYS TYR MET ASN SER ALA SER GLY ASN VAL SER TRP LEU SEQRES 5 B 134 TRP LYS GLN GLU MET ASP GLU ASN PRO GLN GLN LEU LYS SEQRES 6 B 134 LEU GLU LYS GLY ARG MET GLU GLU SER GLN ASN GLU SER SEQRES 7 B 134 LEU ALA THR LEU THR ILE GLN GLY ILE ARG PHE GLU ASP SEQRES 8 B 134 ASN GLY ILE TYR PHE CYS GLN GLN LYS CYS ASN ASN THR SEQRES 9 B 134 SER GLU VAL TYR GLN GLY CYS GLY THR GLU LEU ARG VAL SEQRES 10 B 134 MET GLY PHE SER THR LEU ALA GLN LEU LYS GLN ARG ASN SEQRES 11 B 134 THR LEU LYS ASP FORMUL 3 HOH *2(H2 O) HELIX 1 1 ARG B 113 ASN B 117 5 5 SHEET 1 A 4 TRP A 47 SER A 49 0 SHEET 2 A 4 VAL A 61 TYR A 66 -1 O TYR A 66 N TRP A 47 SHEET 3 A 4 LEU A 104 ILE A 109 -1 O ILE A 109 N VAL A 61 SHEET 4 A 4 MET A 96 GLN A 100 -1 N GLU A 97 O THR A 108 SHEET 1 B 5 PHE A 52 LYS A 56 0 SHEET 2 B 5 THR A 138 MET A 143 1 O GLU A 139 N ILE A 53 SHEET 3 B 5 GLY A 118 LYS A 125 -1 N GLY A 118 O LEU A 140 SHEET 4 B 5 SER A 75 LYS A 79 -1 N SER A 75 O GLN A 123 SHEET 5 B 5 GLN A 87 GLN A 88 -1 O GLN A 87 N TRP A 78 SHEET 1 C 4 PHE A 52 LYS A 56 0 SHEET 2 C 4 THR A 138 MET A 143 1 O GLU A 139 N ILE A 53 SHEET 3 C 4 GLY A 118 LYS A 125 -1 N GLY A 118 O LEU A 140 SHEET 4 C 4 VAL A 132 GLN A 134 -1 O TYR A 133 N GLN A 124 SHEET 1 D 4 TRP B 47 SER B 49 0 SHEET 2 D 4 THR B 60 TYR B 66 -1 O HIS B 64 N SER B 49 SHEET 3 D 4 LEU B 107 GLN B 110 -1 O ILE B 109 N VAL B 61 SHEET 4 D 4 MET B 96 GLU B 98 -1 N GLU B 97 O THR B 108 SHEET 1 E 5 PHE B 52 LYS B 56 0 SHEET 2 E 5 THR B 138 MET B 143 1 O ARG B 141 N ARG B 55 SHEET 3 E 5 GLY B 118 LYS B 125 -1 N GLY B 118 O LEU B 140 SHEET 4 E 5 VAL B 74 LYS B 79 -1 N LEU B 77 O PHE B 121 SHEET 5 E 5 GLN B 87 GLN B 88 -1 O GLN B 87 N TRP B 78 SHEET 1 F 4 PHE B 52 LYS B 56 0 SHEET 2 F 4 THR B 138 MET B 143 1 O ARG B 141 N ARG B 55 SHEET 3 F 4 GLY B 118 LYS B 125 -1 N GLY B 118 O LEU B 140 SHEET 4 F 4 VAL B 132 GLN B 134 -1 O TYR B 133 N GLN B 124 SSBOND 1 CYS A 43 CYS A 126 1555 1555 2.04 SSBOND 2 CYS A 65 CYS A 122 1555 1555 2.04 SSBOND 3 CYS A 136 CYS B 136 1555 1555 2.04 SSBOND 4 CYS B 43 CYS B 126 1555 1555 2.03 SSBOND 5 CYS B 65 CYS B 122 1555 1555 2.04 CISPEP 1 SER A 49 PRO A 50 0 -0.36 CISPEP 2 SER B 49 PRO B 50 0 -1.70 CRYST1 129.800 129.800 129.800 90.00 90.00 90.00 P 41 3 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007704 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007704 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007704 0.00000