HEADER HYDROLASE 29-OCT-09 3KGQ TITLE CARBOXYPEPTIDASE A LIGANDED TO AN ORGANIC SMALL-MOLECULE: TITLE 2 CONFORMATIONAL CHANGES COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBOXYPEPTIDASE A1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CARBOXYPEPTIDASE A, CPA; COMPND 5 EC: 3.4.17.1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 TISSUE: PANCREAS KEYWDS INTESTINAL PROTEASE, ZINC-METALLOCARBOXYPEPTIDASE-CITRATE TERNARY KEYWDS 2 COMPLEX, CARBOXYPEPTIDASE, HYDROLASE, METAL-BINDING, METALLOPROTEASE EXPDTA X-RAY DIFFRACTION AUTHOR D.FERNANDEZ,E.BOIX,I.PALLARES,F.X.AVILES,J.VENDRELL REVDAT 5 01-NOV-23 3KGQ 1 REMARK LINK REVDAT 4 04-OCT-17 3KGQ 1 REMARK REVDAT 3 12-JUN-13 3KGQ 1 JRNL REVDAT 2 03-AUG-11 3KGQ 1 JRNL REVDAT 1 27-OCT-10 3KGQ 0 JRNL AUTH D.FERNANDEZ,E.BOIX,I.PALLARES,F.X.AVILES,J.VENDRELL JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSIS OF THE COMPLEX BETWEEN JRNL TITL 2 CITRATE AND THE ZINC PEPTIDASE CARBOXYPEPTIDASE A JRNL REF ENZYME RES V.2011 28676 2011 JRNL REFN ISSN 2090-0406 JRNL PMID 21804935 JRNL DOI 10.4061/2011/128676 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.5 REMARK 3 NUMBER OF REFLECTIONS : 27296 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.300 REMARK 3 FREE R VALUE TEST SET COUNT : 893 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.75 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1242 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 59.11 REMARK 3 BIN R VALUE (WORKING SET) : 0.3400 REMARK 3 BIN FREE R VALUE SET COUNT : 43 REMARK 3 BIN FREE R VALUE : 0.2900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2398 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 214 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : -0.21000 REMARK 3 B33 (A**2) : 0.27000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.22000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.132 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.115 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.073 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.220 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2532 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3434 ; 1.042 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 308 ; 5.330 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 112 ;31.565 ;23.929 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 391 ;11.408 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;15.692 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 370 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1911 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1520 ; 0.423 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2446 ; 0.795 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1012 ; 1.147 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 985 ; 1.876 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 3KGQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-NOV-09. REMARK 100 THE DEPOSITION ID IS D_1000055971. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8150 REMARK 200 MONOCHROMATOR : SI (111), HORIZONTALLY FOCUSSING REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR555 FLAT PANEL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOMAR REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.25 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29594 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.698 REMARK 200 RESOLUTION RANGE LOW (A) : 20.673 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : 0.07800 REMARK 200 FOR THE DATA SET : 18.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.28000 REMARK 200 R SYM FOR SHELL (I) : 0.28000 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2CTB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.2M NH4CL, 0.02M TRIS, REMARK 280 PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 28.50300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 ARG A 2 REMARK 465 ASN A 306 REMARK 465 ASN A 307 REMARK 465 LEU A 308 REMARK 465 TYR A 309 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 57 OG REMARK 470 ASN A 58 CG OD1 ND2 REMARK 470 LYS A 168 CG CD CE NZ REMARK 470 ARG A 276 CZ NH1 NH2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 184 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 122 -48.42 -138.65 REMARK 500 THR A 129 -170.84 -67.81 REMARK 500 SER A 135 47.53 -103.74 REMARK 500 SER A 199 -6.96 149.99 REMARK 500 GLN A 200 64.31 62.14 REMARK 500 ASP A 273 -143.30 -104.87 REMARK 500 LEU A 280 37.25 -95.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 69 ND1 REMARK 620 2 GLU A 72 OE2 99.6 REMARK 620 3 GLU A 72 OE1 118.3 54.6 REMARK 620 4 HIS A 196 ND1 99.3 142.1 87.4 REMARK 620 5 CIT A 310 O2 91.0 101.9 143.4 110.4 REMARK 620 6 CIT A 310 O1 144.0 92.2 96.3 91.6 53.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACN A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 314 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 315 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 317 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 318 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 319 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 320 DBREF 3KGQ A 1 309 UNP P00730 CBPA1_BOVIN 111 419 SEQRES 1 A 309 ALA ARG SER THR ASN THR PHE ASN TYR ALA THR TYR HIS SEQRES 2 A 309 THR LEU ASP GLU ILE TYR ASP PHE MET ASP LEU LEU VAL SEQRES 3 A 309 ALA GLU HIS PRO GLN LEU VAL SER LYS LEU GLN ILE GLY SEQRES 4 A 309 ARG SER TYR GLU GLY ARG PRO ILE TYR VAL LEU LYS PHE SEQRES 5 A 309 SER THR GLY GLY SER ASN ARG PRO ALA ILE TRP ILE ASP SEQRES 6 A 309 LEU GLY ILE HIS SER ARG GLU TRP ILE THR GLN ALA THR SEQRES 7 A 309 GLY VAL TRP PHE ALA LYS LYS PHE THR GLU ASP TYR GLY SEQRES 8 A 309 GLN ASP PRO SER PHE THR ALA ILE LEU ASP SER MET ASP SEQRES 9 A 309 ILE PHE LEU GLU ILE VAL THR ASN PRO ASP GLY PHE ALA SEQRES 10 A 309 PHE THR HIS SER GLN ASN ARG LEU TRP ARG LYS THR ARG SEQRES 11 A 309 SER VAL THR SER SER SER LEU CYS VAL GLY VAL ASP ALA SEQRES 12 A 309 ASN ARG ASN TRP ASP ALA GLY PHE GLY LYS ALA GLY ALA SEQRES 13 A 309 SER SER SER PRO CYS SER GLU THR TYR HIS GLY LYS TYR SEQRES 14 A 309 ALA ASN SER GLU VAL GLU VAL LYS SER ILE VAL ASP PHE SEQRES 15 A 309 VAL LYS ASP HIS GLY ASN PHE LYS ALA PHE LEU SER ILE SEQRES 16 A 309 HIS SER TYR SER GLN LEU LEU LEU TYR PRO TYR GLY TYR SEQRES 17 A 309 THR THR GLN SER ILE PRO ASP LYS THR GLU LEU ASN GLN SEQRES 18 A 309 VAL ALA LYS SER ALA VAL GLU ALA LEU LYS SER LEU TYR SEQRES 19 A 309 GLY THR SER TYR LYS TYR GLY SER ILE ILE THR THR ILE SEQRES 20 A 309 TYR GLN ALA SER GLY GLY SER ILE ASP TRP SER TYR ASN SEQRES 21 A 309 GLN GLY ILE LYS TYR SER PHE THR PHE GLU LEU ARG ASP SEQRES 22 A 309 THR GLY ARG TYR GLY PHE LEU LEU PRO ALA SER GLN ILE SEQRES 23 A 309 ILE PRO THR ALA GLN GLU THR TRP LEU GLY VAL LEU THR SEQRES 24 A 309 ILE MET GLU HIS THR LEU ASN ASN LEU TYR HET ZN A 401 1 HET NA A 402 1 HET CIT A 310 13 HET ACN A 311 4 HET FMT A 312 3 HET FMT A 313 3 HET FMT A 314 3 HET GOL A 315 6 HET GOL A 316 6 HET GOL A 317 6 HET GOL A 318 6 HET GOL A 319 6 HET GOL A 320 6 HETNAM ZN ZINC ION HETNAM NA SODIUM ION HETNAM CIT CITRIC ACID HETNAM ACN ACETONE HETNAM FMT FORMIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ZN ZN 2+ FORMUL 3 NA NA 1+ FORMUL 4 CIT C6 H8 O7 FORMUL 5 ACN C3 H6 O FORMUL 6 FMT 3(C H2 O2) FORMUL 9 GOL 6(C3 H8 O3) FORMUL 15 HOH *214(H2 O) HELIX 1 1 THR A 14 HIS A 29 1 16 HELIX 2 2 GLU A 72 TYR A 90 1 19 HELIX 3 3 ASP A 93 MET A 103 1 11 HELIX 4 4 ASN A 112 GLN A 122 1 11 HELIX 5 5 ASP A 142 ASN A 146 5 5 HELIX 6 6 GLU A 173 GLY A 187 1 15 HELIX 7 7 ASP A 215 SER A 232 1 18 HELIX 8 8 ILE A 243 ILE A 247 1 5 HELIX 9 9 GLY A 253 GLN A 261 1 9 HELIX 10 10 TYR A 277 LEU A 281 5 5 HELIX 11 11 PRO A 282 SER A 284 5 3 HELIX 12 12 GLN A 285 LEU A 305 1 21 SHEET 1 A 8 VAL A 33 ARG A 40 0 SHEET 2 A 8 PRO A 46 PHE A 52 -1 O VAL A 49 N LEU A 36 SHEET 3 A 8 ASP A 104 GLU A 108 -1 O ILE A 105 N PHE A 52 SHEET 4 A 8 ALA A 61 LEU A 66 1 N ILE A 64 O GLU A 108 SHEET 5 A 8 PHE A 189 HIS A 196 1 O LEU A 193 N TRP A 63 SHEET 6 A 8 TYR A 265 GLU A 270 1 O PHE A 269 N HIS A 196 SHEET 7 A 8 LEU A 201 TYR A 204 -1 N LEU A 203 O THR A 268 SHEET 8 A 8 LYS A 239 SER A 242 1 O LYS A 239 N LEU A 202 SSBOND 1 CYS A 138 CYS A 161 1555 1555 2.02 LINK ND1 HIS A 69 ZN ZN A 401 1555 1555 2.09 LINK OE2 GLU A 72 ZN ZN A 401 1555 1555 2.06 LINK OE1 GLU A 72 ZN ZN A 401 1555 1555 2.60 LINK ND1 HIS A 196 ZN ZN A 401 1555 1555 2.08 LINK O2 CIT A 310 ZN ZN A 401 1555 1555 2.08 LINK O1 CIT A 310 ZN ZN A 401 1555 1555 2.55 CISPEP 1 SER A 197 TYR A 198 0 -1.93 CISPEP 2 PRO A 205 TYR A 206 0 0.03 CISPEP 3 ARG A 272 ASP A 273 0 -5.45 SITE 1 AC1 4 HIS A 69 GLU A 72 HIS A 196 CIT A 310 SITE 1 AC2 2 LEU A 15 HIS A 120 SITE 1 AC3 13 HIS A 69 GLU A 72 ARG A 127 ASN A 144 SITE 2 AC3 13 ARG A 145 HIS A 196 SER A 197 TYR A 248 SITE 3 AC3 13 ALA A 250 GLU A 270 ZN A 401 HOH A 431 SITE 4 AC3 13 HOH A 535 SITE 1 AC4 2 GLN A 37 ARG A 40 SITE 1 AC5 4 ILE A 244 THR A 245 ILE A 247 HOH A 414 SITE 1 AC6 6 SER A 199 GLN A 200 LEU A 201 SER A 237 SITE 2 AC6 6 LYS A 239 HOH A 502 SITE 1 AC7 3 TYR A 206 LEU A 280 HOH A 474 SITE 1 AC8 8 ASN A 8 VAL A 183 GLY A 187 ASN A 188 SITE 2 AC8 8 PHE A 189 GLN A 261 ILE A 263 HOH A 514 SITE 1 AC9 5 TYR A 9 TRP A 81 LYS A 85 GLU A 88 SITE 2 AC9 5 HOH A 518 SITE 1 BC1 3 GLU A 43 GOL A 319 HOH A 326 SITE 1 BC2 2 GLU A 43 GOL A 318 SITE 1 BC3 4 TYR A 12 ARG A 124 LEU A 280 LEU A 281 CRYST1 40.604 57.006 60.604 90.00 102.04 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024628 0.000000 0.005251 0.00000 SCALE2 0.000000 0.017542 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016872 0.00000