HEADER HYDROLASE 29-OCT-09 3KH1 TITLE CRYSTAL STRUCTURE OF PREDICTED METAL-DEPENDENT PHOSPHOHYDROLASE TITLE 2 (ZP_00055740.2) FROM MAGNETOSPIRILLUM MAGNETOTACTICUM MS-1 AT 1.37 A TITLE 3 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PREDICTED METAL-DEPENDENT PHOSPHOHYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MAGNETOSPIRILLUM MAGNETOTACTICUM MS-1; SOURCE 3 ORGANISM_TAXID: 272627; SOURCE 4 GENE: ZP_00055740.2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PREDICTED METAL-DEPENDENT PHOSPHOHYDROLASE, STRUCTURAL GENOMICS, KEYWDS 2 JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, PSI-2, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 4 20-NOV-24 3KH1 1 REMARK REVDAT 3 17-JUL-19 3KH1 1 REMARK LINK REVDAT 2 25-OCT-17 3KH1 1 SOURCE REMARK DBREF SEQADV REVDAT 2 2 1 SEQRES REVDAT 1 24-NOV-09 3KH1 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PREDICTED METAL-DEPENDENT JRNL TITL 2 PHOSPHOHYDROLASE (ZP_00055740.2) FROM MAGNETOSPIRILLUM JRNL TITL 3 MAGNETOTACTICUM MS-1 AT 1.37 A RESOLUTION ; JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 85080 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.133 REMARK 3 R VALUE (WORKING SET) : 0.132 REMARK 3 FREE R VALUE : 0.164 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4252 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.37 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5811 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.1910 REMARK 3 BIN FREE R VALUE SET COUNT : 302 REMARK 3 BIN FREE R VALUE : 0.2160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3019 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 501 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.68 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.02000 REMARK 3 B22 (A**2) : 1.15000 REMARK 3 B33 (A**2) : -0.29000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.18000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.051 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.049 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.030 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.667 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.977 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.966 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3254 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2258 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4442 ; 1.147 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5462 ; 0.905 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 432 ; 4.521 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 164 ;32.665 ;22.378 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 557 ;13.029 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;12.976 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 498 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3712 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 720 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2002 ; 0.776 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 798 ; 0.234 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3215 ; 1.236 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1252 ; 2.114 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1202 ; 3.155 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5511 ; 0.736 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 90 REMARK 3 RESIDUE RANGE : A 94 A 199 REMARK 3 ORIGIN FOR THE GROUP (A): 0.6049 44.6961 19.0795 REMARK 3 T TENSOR REMARK 3 T11: 0.0477 T22: 0.0175 REMARK 3 T33: 0.0412 T12: -0.0074 REMARK 3 T13: 0.0047 T23: 0.0132 REMARK 3 L TENSOR REMARK 3 L11: 1.6280 L22: 0.5144 REMARK 3 L33: 0.8463 L12: -0.3941 REMARK 3 L13: 0.2332 L23: -0.0850 REMARK 3 S TENSOR REMARK 3 S11: -0.0059 S12: -0.1181 S13: -0.1881 REMARK 3 S21: 0.0435 S22: 0.0288 S23: 0.0755 REMARK 3 S31: 0.0506 S32: -0.1016 S33: -0.0229 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 6 B 88 REMARK 3 RESIDUE RANGE : B 94 B 199 REMARK 3 ORIGIN FOR THE GROUP (A): 19.8058 51.6887 11.3976 REMARK 3 T TENSOR REMARK 3 T11: 0.0453 T22: 0.0685 REMARK 3 T33: 0.0434 T12: -0.0129 REMARK 3 T13: 0.0047 T23: 0.0133 REMARK 3 L TENSOR REMARK 3 L11: 1.3520 L22: 0.6661 REMARK 3 L33: 1.0261 L12: -0.1768 REMARK 3 L13: 0.3602 L23: -0.0289 REMARK 3 S TENSOR REMARK 3 S11: 0.0103 S12: 0.1606 S13: 0.0742 REMARK 3 S21: -0.0347 S22: -0.0308 S23: -0.1112 REMARK 3 S31: -0.0471 S32: 0.2554 S33: 0.0205 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM REMARK 3 RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. 3. A MET- REMARK 3 INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION REMARK 3 DURING PROTEIN EXPRESSION. REMARK 3 THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 4. ACETATE (ACT), CALCIUM (CA), AND A PEG-200 REMARK 3 FRAGMENT (PG4) FROM THE CRYSTALLIZATION/CRYOPROTECTION SOLUTION REMARK 3 ARE MODELED. REMARK 4 REMARK 4 3KH1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000055982. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-AUG-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.67 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978985 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(311) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : VERTICAL FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 85080 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.370 REMARK 200 RESOLUTION RANGE LOW (A) : 41.959 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.49500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THE STATISTICS REPORTED IN REMARK 200 WERE COMPUTED WITH REMARK 200 XSCALE WITH FRIEDEL PAIRS KEPT SEPARATE. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20.0000% POLYETHYLENE GLYCOL 3000, REMARK 280 0.2500M CALCIUM ACETATE, 0.1M TRIS PH 7.67, NANODROP, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 38.92600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.95300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 38.92600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 41.95300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY AND CRYSTAL REMARK 300 PACKING SUPPORT THE ASSIGNMENT OF A DIMER AS A SIGNIFICANT REMARK 300 OLIGOMERIZATION STATE IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 GLY A 91 REMARK 465 ASN A 92 REMARK 465 GLU A 93 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 ILE B 2 REMARK 465 PRO B 3 REMARK 465 PHE B 4 REMARK 465 PRO B 5 REMARK 465 GLU B 89 REMARK 465 ALA B 90 REMARK 465 GLY B 91 REMARK 465 ASN B 92 REMARK 465 GLU B 93 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 60 CG CD OE1 OE2 REMARK 470 GLU A 89 CG CD OE1 OE2 REMARK 470 ASP A 94 CG OD1 OD2 REMARK 470 GLU A 96 CG CD OE1 OE2 REMARK 470 GLU A 97 CD OE1 OE2 REMARK 470 LYS A 101 CG CD CE NZ REMARK 470 LYS A 168 CD CE NZ REMARK 470 LYS A 178 CE NZ REMARK 470 GLU B 6 CD OE1 OE2 REMARK 470 ASP B 94 CG OD1 OD2 REMARK 470 GLU B 96 CG CD OE1 OE2 REMARK 470 GLU B 97 CD OE1 OE2 REMARK 470 LYS B 101 CG CD CE NZ REMARK 470 LYS B 165 CD CE NZ REMARK 470 LYS B 168 CG CD CE NZ REMARK 470 LYS B 178 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR B 32 O HOH B 488 2.10 REMARK 500 OE1 GLN A 123 O HOH A 311 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 42 CG GLU A 42 CD 0.107 REMARK 500 GLU A 42 CD GLU A 42 OE2 -0.071 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 34 18.28 59.18 REMARK 500 SER A 177 117.84 -162.89 REMARK 500 SER B 34 16.77 57.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 329 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH B 338 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH B 496 DISTANCE = 6.93 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PG4 B 200 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 B 200 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-394528 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 1. THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. 2. THE SEQUENCE REMARK 999 OF THIS PROTEIN WAS NOT AVAILABLE AT THE UNIPROT KNOWLEDGEBASE REMARK 999 DATABASE (UNIPROTKB) AT THE TIME OF DEPOSITION. THE SEQUENCE REMARK 999 INFORMATION IS AVAILABLE FROM GENBANK WITH ACCESSION CODE ZP_ REMARK 999 00055740.2 AND FROM THE UNIPROT ARCHIVE (UNIPARC) WITH ACCESSION REMARK 999 CODE UPI00003847C7. DBREF 3KH1 A 0 199 UNP D1MPT5 D1MPT5_MAGMG 1 200 DBREF 3KH1 B 0 199 UNP D1MPT5 D1MPT5_MAGMG 1 200 SEQRES 1 A 200 GLY MSE ILE PRO PHE PRO GLU SER ARG LEU ALA ALA GLN SEQRES 2 A 200 MSE SER PHE VAL VAL GLU ILE ASP LYS LEU LYS THR ILE SEQRES 3 A 200 LEU ARG GLN THR LEU LEU THR ASP SER SER ARG ARG GLU SEQRES 4 A 200 ASN ASP ALA GLU HIS SER TRP HIS ILE ALA THR MSE ALA SEQRES 5 A 200 PHE LEU LEU ALA GLU TYR ALA ASP GLU ALA VAL GLN ILE SEQRES 6 A 200 GLY ARG VAL ALA ARG MSE LEU LEU ILE HIS ASP ILE VAL SEQRES 7 A 200 GLU ILE ASP ALA GLY ASP THR PHE ILE HIS ASP GLU ALA SEQRES 8 A 200 GLY ASN GLU ASP LYS GLU GLU ARG GLU ARG LYS ALA ALA SEQRES 9 A 200 ALA ARG LEU PHE GLY LEU LEU PRO PRO ASP GLN ALA ALA SEQRES 10 A 200 GLU TYR SER ALA LEU TRP GLN GLU TYR GLU ALA ARG GLU SEQRES 11 A 200 THR ALA ASP ALA ARG PHE ALA ASP ALA LEU ASP ARG LEU SEQRES 12 A 200 GLN PRO LEU LEU HIS ASN PHE GLU THR GLU GLY GLY THR SEQRES 13 A 200 TRP LYS PRO HIS GLY VAL THR ARG ALA LYS VAL ASP LYS SEQRES 14 A 200 LEU LEU PRO ARG ILE GLU ALA GLY SER LYS ARG LEU GLY SEQRES 15 A 200 ALA TYR ALA ARG ALA LEU VAL ASP GLU ALA VAL ARG ARG SEQRES 16 A 200 GLY TYR LEU ALA PRO SEQRES 1 B 200 GLY MSE ILE PRO PHE PRO GLU SER ARG LEU ALA ALA GLN SEQRES 2 B 200 MSE SER PHE VAL VAL GLU ILE ASP LYS LEU LYS THR ILE SEQRES 3 B 200 LEU ARG GLN THR LEU LEU THR ASP SER SER ARG ARG GLU SEQRES 4 B 200 ASN ASP ALA GLU HIS SER TRP HIS ILE ALA THR MSE ALA SEQRES 5 B 200 PHE LEU LEU ALA GLU TYR ALA ASP GLU ALA VAL GLN ILE SEQRES 6 B 200 GLY ARG VAL ALA ARG MSE LEU LEU ILE HIS ASP ILE VAL SEQRES 7 B 200 GLU ILE ASP ALA GLY ASP THR PHE ILE HIS ASP GLU ALA SEQRES 8 B 200 GLY ASN GLU ASP LYS GLU GLU ARG GLU ARG LYS ALA ALA SEQRES 9 B 200 ALA ARG LEU PHE GLY LEU LEU PRO PRO ASP GLN ALA ALA SEQRES 10 B 200 GLU TYR SER ALA LEU TRP GLN GLU TYR GLU ALA ARG GLU SEQRES 11 B 200 THR ALA ASP ALA ARG PHE ALA ASP ALA LEU ASP ARG LEU SEQRES 12 B 200 GLN PRO LEU LEU HIS ASN PHE GLU THR GLU GLY GLY THR SEQRES 13 B 200 TRP LYS PRO HIS GLY VAL THR ARG ALA LYS VAL ASP LYS SEQRES 14 B 200 LEU LEU PRO ARG ILE GLU ALA GLY SER LYS ARG LEU GLY SEQRES 15 B 200 ALA TYR ALA ARG ALA LEU VAL ASP GLU ALA VAL ARG ARG SEQRES 16 B 200 GLY TYR LEU ALA PRO MODRES 3KH1 MSE A 1 MET MODIFIED RESIDUE MODRES 3KH1 MSE A 13 MET MODIFIED RESIDUE MODRES 3KH1 MSE A 50 MET MODIFIED RESIDUE MODRES 3KH1 MSE A 70 MET MODIFIED RESIDUE MODRES 3KH1 MSE B 13 MET MODIFIED RESIDUE MODRES 3KH1 MSE B 50 MET MODIFIED RESIDUE MODRES 3KH1 MSE B 70 MET MODIFIED RESIDUE HET MSE A 1 16 HET MSE A 13 8 HET MSE A 50 8 HET MSE A 70 8 HET MSE B 13 8 HET MSE B 50 8 HET MSE B 70 8 HET CA A 200 1 HET ACT A 201 4 HET PG4 B 200 7 HETNAM MSE SELENOMETHIONINE HETNAM CA CALCIUM ION HETNAM ACT ACETATE ION HETNAM PG4 TETRAETHYLENE GLYCOL FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 3 CA CA 2+ FORMUL 4 ACT C2 H3 O2 1- FORMUL 5 PG4 C8 H18 O5 FORMUL 6 HOH *501(H2 O) HELIX 1 1 PRO A 3 PRO A 5 5 3 HELIX 2 2 GLU A 6 ILE A 19 1 14 HELIX 3 3 ASP A 20 THR A 24 5 5 HELIX 4 4 ASP A 40 LEU A 54 1 15 HELIX 5 5 ALA A 55 ALA A 58 5 4 HELIX 6 6 GLN A 63 HIS A 74 1 12 HELIX 7 7 VAL A 77 GLY A 82 1 6 HELIX 8 8 ASP A 94 GLY A 108 1 15 HELIX 9 9 PRO A 111 ARG A 128 1 18 HELIX 10 10 THR A 130 THR A 151 1 22 HELIX 11 11 THR A 162 SER A 177 1 16 HELIX 12 12 SER A 177 ARG A 194 1 18 HELIX 13 13 GLU B 6 ILE B 19 1 14 HELIX 14 14 ASP B 20 THR B 24 5 5 HELIX 15 15 ASP B 40 LEU B 54 1 15 HELIX 16 16 ALA B 55 ALA B 58 5 4 HELIX 17 17 GLN B 63 HIS B 74 1 12 HELIX 18 18 VAL B 77 GLY B 82 1 6 HELIX 19 19 ASP B 94 PHE B 107 1 14 HELIX 20 20 GLY B 108 LEU B 110 5 3 HELIX 21 21 PRO B 111 ARG B 128 1 18 HELIX 22 22 THR B 130 THR B 151 1 22 HELIX 23 23 THR B 162 LYS B 168 1 7 HELIX 24 24 LEU B 169 SER B 177 1 9 HELIX 25 25 SER B 177 ARG B 194 1 18 SHEET 1 A 2 LEU A 26 LEU A 30 0 SHEET 2 A 2 ARG A 37 ASN A 39 -1 O GLU A 38 N ARG A 27 SHEET 1 B 2 LEU B 26 LEU B 30 0 SHEET 2 B 2 ARG B 37 ASN B 39 -1 O GLU B 38 N ARG B 27 LINK C AMSE A 1 N ILE A 2 1555 1555 1.34 LINK C BMSE A 1 N ILE A 2 1555 1555 1.32 LINK C GLN A 12 N MSE A 13 1555 1555 1.33 LINK C MSE A 13 N SER A 14 1555 1555 1.35 LINK C THR A 49 N MSE A 50 1555 1555 1.33 LINK C MSE A 50 N ALA A 51 1555 1555 1.34 LINK C ARG A 69 N MSE A 70 1555 1555 1.32 LINK C MSE A 70 N LEU A 71 1555 1555 1.32 LINK C GLN B 12 N MSE B 13 1555 1555 1.32 LINK C MSE B 13 N SER B 14 1555 1555 1.33 LINK C THR B 49 N MSE B 50 1555 1555 1.34 LINK C MSE B 50 N ALA B 51 1555 1555 1.33 LINK C ARG B 69 N MSE B 70 1555 1555 1.33 LINK C MSE B 70 N LEU B 71 1555 1555 1.33 SITE 1 AC1 3 THR A 29 THR A 155 HOH A 277 SITE 1 AC2 5 ARG A 36 ARG A 37 HOH A 255 HOH A 266 SITE 2 AC2 5 HOH A 373 SITE 1 AC3 4 PHE B 149 TYR B 183 HOH B 464 HOH B 491 CRYST1 77.852 83.906 71.278 90.00 116.89 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012845 0.000000 0.006514 0.00000 SCALE2 0.000000 0.011918 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015730 0.00000 HETATM 1 N AMSE A 1 29.762 25.140 7.263 0.50 33.95 N ANISOU 1 N AMSE A 1 4139 4085 4675 1383 -504 -637 N HETATM 2 N BMSE A 1 31.444 25.025 7.500 0.50 33.02 N ANISOU 2 N BMSE A 1 4005 3852 4687 1440 -342 -680 N HETATM 3 CA AMSE A 1 30.187 24.442 8.522 0.50 33.67 C ANISOU 3 CA AMSE A 1 4161 3987 4645 1387 -439 -708 C HETATM 4 CA BMSE A 1 30.447 24.676 8.557 0.50 32.37 C ANISOU 4 CA BMSE A 1 3987 3735 4574 1443 -343 -743 C HETATM 5 C AMSE A 1 30.462 25.472 9.652 0.50 32.06 C ANISOU 5 C AMSE A 1 3920 3794 4467 1341 -410 -589 C HETATM 6 C BMSE A 1 30.242 25.813 9.580 0.50 31.32 C ANISOU 6 C BMSE A 1 3866 3594 4439 1391 -333 -601 C HETATM 7 O AMSE A 1 31.437 26.241 9.606 0.50 32.41 O ANISOU 7 O AMSE A 1 3835 3947 4531 1360 -446 -475 O HETATM 8 O BMSE A 1 30.632 26.997 9.406 0.50 31.14 O ANISOU 8 O BMSE A 1 3857 3605 4367 1434 -286 -643 O HETATM 9 CB AMSE A 1 31.380 23.483 8.264 0.50 34.43 C ANISOU 9 CB AMSE A 1 4295 4056 4730 1409 -422 -792 C HETATM 10 CB BMSE A 1 30.830 23.349 9.286 0.50 33.22 C ANISOU 10 CB BMSE A 1 4108 3809 4702 1434 -385 -761 C HETATM 11 CG AMSE A 1 30.972 22.083 7.678 0.50 37.78 C ANISOU 11 CG AMSE A 1 4819 4332 5203 1395 -548 -1055 C HETATM 12 CG BMSE A 1 29.795 22.133 9.166 0.50 33.61 C ANISOU 12 CG BMSE A 1 4238 3752 4779 1423 -574 -919 C HETATM 13 SE AMSE A 1 32.417 20.941 6.901 0.38 43.18 SE ANISOU 13 SE AMSE A 1 5384 5029 5992 1453 -616 -1607 SE HETATM 14 SE BMSE A 1 29.344 21.085 10.855 0.37 31.89 SE ANISOU 14 SE BMSE A 1 4146 3796 4173 1777 -1085 -1196 SE HETATM 15 CE AMSE A 1 33.656 22.395 6.454 0.50 44.07 C ANISOU 15 CE AMSE A 1 5368 5302 6073 1431 -539 -1256 C HETATM 16 CE BMSE A 1 28.563 19.543 10.102 0.50 36.19 C ANISOU 16 CE BMSE A 1 4788 3961 4999 1331 -922 -1044 C