data_3KH6 # _entry.id 3KH6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3KH6 RCSB RCSB055987 WWPDB D_1000055987 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2013-02-06 _pdbx_database_PDB_obs_spr.pdb_id 3V2B _pdbx_database_PDB_obs_spr.replace_pdb_id 3KH6 _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_status.status_code OBS _pdbx_database_status.entry_id 3KH6 _pdbx_database_status.recvd_initial_deposition_date 2009-10-30 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Karlberg, T.' 1 'Moche, M.' 2 'Arrowsmith, C.H.' 3 'Berglund, H.' 4 'Bountra, C.' 5 'Collins, R.' 6 'Edwards, A.M.' 7 'Flodin, S.' 8 'Flores, A.' 9 'Graslund, S.' 10 'Hammarstrom, M.' 11 'Johansson, A.' 12 'Johansson, I.' 13 'Kallas, A.' 14 'Kotenyova, T.' 15 'Kotzsch, A.' 16 'Kraulis, P.' 17 'Nielsen, T.K.' 18 'Nordlund, P.' 19 'Nyman, T.' 20 'Persson, C.' 21 'Roos, A.K.' 22 'Schutz, P.' 23 'Siponen, M.I.' 24 'Thorsell, A.G.' 25 'Tresaugues, L.' 26 'Van Den Berg, S.' 27 'Weigelt, J.' 28 'Welin, M.' 29 'Wisniewska, M.' 30 'Schuler, H.' 31 'Structural Genomics Consortium (SGC)' 32 # _citation.id primary _citation.title 'Human poly(adp-ribose) polymerase 15, macro domain 2 in complex with adenosine-5-diphosphoribose' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Karlberg, T.' 1 primary 'Moche, M.' 2 primary 'Arrowsmith, C.H.' 3 primary 'Berglund, H.' 4 primary 'Bountra, C.' 5 primary 'Collins, R.' 6 primary 'Edwards, A.M.' 7 primary 'Flodin, S.' 8 primary 'Flores, A.' 9 primary 'Graslund, S.' 10 primary 'Hammarstrom, M.' 11 primary 'Johansson, A.' 12 primary 'Johansson, I.' 13 primary 'Kallas, A.' 14 primary 'Kotenyova, T.' 15 primary 'Kotzsch, A.' 16 primary 'Kraulis, P.' 17 primary 'Nielsen, T.K.' 18 primary 'Nordlund, P.' 19 primary 'Nyman, T.' 20 primary 'Persson, C.' 21 primary 'Roos, A.K.' 22 primary 'Schutz, P.' 23 primary 'Siponen, M.I.' 24 primary 'Thorsell, A.G.' 25 primary 'Tresaugues, L.' 26 primary 'Van Den Berg, S.' 27 primary 'Weigelt, J.' 28 primary 'Welin, M.' 29 primary 'Wisniewska, M.' 30 primary 'Schuler, H.' 31 # _cell.entry_id 3KH6 _cell.length_a 68.102 _cell.length_b 91.187 _cell.length_c 62.851 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3KH6 _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Poly [ADP-ribose] polymerase 15' 21590.600 1 2.4.2.30 ? 'UNP RESIDUES 273-448, MACRO DOMAIN 2' ? 2 non-polymer syn ADENOSINE-5-DIPHOSPHORIBOSE 559.316 1 ? ? ? ? 3 water nat water 18.015 96 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'PARP-15, B-aggressive lymphoma protein 3' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MHHHHHHSSGVDLGTENLYFQSMTAYEMKIGAITFQVATGDIATEQVDVIVNSTARTFNRKSGVSRAILEGAGQAVESEC AVLAAQPHRDFIITPGGCLKCKIIIHVPGGKDVRKTVTSVLEECEQRKYTSVSLPAIGTGNAGKNPITVADNIIDAIVDF SSQHSTPSLKTVKVVIFQPELLNIFYDSMKKRDLSASLN ; _entity_poly.pdbx_seq_one_letter_code_can ;MHHHHHHSSGVDLGTENLYFQSMTAYEMKIGAITFQVATGDIATEQVDVIVNSTARTFNRKSGVSRAILEGAGQAVESEC AVLAAQPHRDFIITPGGCLKCKIIIHVPGGKDVRKTVTSVLEECEQRKYTSVSLPAIGTGNAGKNPITVADNIIDAIVDF SSQHSTPSLKTVKVVIFQPELLNIFYDSMKKRDLSASLN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 HIS n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 SER n 1 9 SER n 1 10 GLY n 1 11 VAL n 1 12 ASP n 1 13 LEU n 1 14 GLY n 1 15 THR n 1 16 GLU n 1 17 ASN n 1 18 LEU n 1 19 TYR n 1 20 PHE n 1 21 GLN n 1 22 SER n 1 23 MET n 1 24 THR n 1 25 ALA n 1 26 TYR n 1 27 GLU n 1 28 MET n 1 29 LYS n 1 30 ILE n 1 31 GLY n 1 32 ALA n 1 33 ILE n 1 34 THR n 1 35 PHE n 1 36 GLN n 1 37 VAL n 1 38 ALA n 1 39 THR n 1 40 GLY n 1 41 ASP n 1 42 ILE n 1 43 ALA n 1 44 THR n 1 45 GLU n 1 46 GLN n 1 47 VAL n 1 48 ASP n 1 49 VAL n 1 50 ILE n 1 51 VAL n 1 52 ASN n 1 53 SER n 1 54 THR n 1 55 ALA n 1 56 ARG n 1 57 THR n 1 58 PHE n 1 59 ASN n 1 60 ARG n 1 61 LYS n 1 62 SER n 1 63 GLY n 1 64 VAL n 1 65 SER n 1 66 ARG n 1 67 ALA n 1 68 ILE n 1 69 LEU n 1 70 GLU n 1 71 GLY n 1 72 ALA n 1 73 GLY n 1 74 GLN n 1 75 ALA n 1 76 VAL n 1 77 GLU n 1 78 SER n 1 79 GLU n 1 80 CYS n 1 81 ALA n 1 82 VAL n 1 83 LEU n 1 84 ALA n 1 85 ALA n 1 86 GLN n 1 87 PRO n 1 88 HIS n 1 89 ARG n 1 90 ASP n 1 91 PHE n 1 92 ILE n 1 93 ILE n 1 94 THR n 1 95 PRO n 1 96 GLY n 1 97 GLY n 1 98 CYS n 1 99 LEU n 1 100 LYS n 1 101 CYS n 1 102 LYS n 1 103 ILE n 1 104 ILE n 1 105 ILE n 1 106 HIS n 1 107 VAL n 1 108 PRO n 1 109 GLY n 1 110 GLY n 1 111 LYS n 1 112 ASP n 1 113 VAL n 1 114 ARG n 1 115 LYS n 1 116 THR n 1 117 VAL n 1 118 THR n 1 119 SER n 1 120 VAL n 1 121 LEU n 1 122 GLU n 1 123 GLU n 1 124 CYS n 1 125 GLU n 1 126 GLN n 1 127 ARG n 1 128 LYS n 1 129 TYR n 1 130 THR n 1 131 SER n 1 132 VAL n 1 133 SER n 1 134 LEU n 1 135 PRO n 1 136 ALA n 1 137 ILE n 1 138 GLY n 1 139 THR n 1 140 GLY n 1 141 ASN n 1 142 ALA n 1 143 GLY n 1 144 LYS n 1 145 ASN n 1 146 PRO n 1 147 ILE n 1 148 THR n 1 149 VAL n 1 150 ALA n 1 151 ASP n 1 152 ASN n 1 153 ILE n 1 154 ILE n 1 155 ASP n 1 156 ALA n 1 157 ILE n 1 158 VAL n 1 159 ASP n 1 160 PHE n 1 161 SER n 1 162 SER n 1 163 GLN n 1 164 HIS n 1 165 SER n 1 166 THR n 1 167 PRO n 1 168 SER n 1 169 LEU n 1 170 LYS n 1 171 THR n 1 172 VAL n 1 173 LYS n 1 174 VAL n 1 175 VAL n 1 176 ILE n 1 177 PHE n 1 178 GLN n 1 179 PRO n 1 180 GLU n 1 181 LEU n 1 182 LEU n 1 183 ASN n 1 184 ILE n 1 185 PHE n 1 186 TYR n 1 187 ASP n 1 188 SER n 1 189 MET n 1 190 LYS n 1 191 LYS n 1 192 ARG n 1 193 ASP n 1 194 LEU n 1 195 SER n 1 196 ALA n 1 197 SER n 1 198 LEU n 1 199 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'BAL3, PARP15' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3) R3 pRARE' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pNIC-Bsa4 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PAR15_HUMAN _struct_ref.pdbx_db_accession Q460N3 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;TAYEMKIGAITFQVATGDIATEQVDVIVNSTARTFNRKSGVSRAILEGAGQAVESECAVLAAQPHRDFIITPGGCLKCKI IIHVPGGKDVRKTVTSVLEECEQRKYTSVSLPAIGTGNAGKNPITVADNIIDAIVDFSSQHSTPSLKTVKVVIFQPELLN IFYDSMKKRDLSASLN ; _struct_ref.pdbx_align_begin 273 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3KH6 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 24 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 199 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q460N3 _struct_ref_seq.db_align_beg 273 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 448 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 273 _struct_ref_seq.pdbx_auth_seq_align_end 448 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3KH6 MET A 1 ? UNP Q460N3 ? ? 'EXPRESSION TAG' 250 1 1 3KH6 HIS A 2 ? UNP Q460N3 ? ? 'EXPRESSION TAG' 251 2 1 3KH6 HIS A 3 ? UNP Q460N3 ? ? 'EXPRESSION TAG' 252 3 1 3KH6 HIS A 4 ? UNP Q460N3 ? ? 'EXPRESSION TAG' 253 4 1 3KH6 HIS A 5 ? UNP Q460N3 ? ? 'EXPRESSION TAG' 254 5 1 3KH6 HIS A 6 ? UNP Q460N3 ? ? 'EXPRESSION TAG' 255 6 1 3KH6 HIS A 7 ? UNP Q460N3 ? ? 'EXPRESSION TAG' 256 7 1 3KH6 SER A 8 ? UNP Q460N3 ? ? 'EXPRESSION TAG' 257 8 1 3KH6 SER A 9 ? UNP Q460N3 ? ? 'EXPRESSION TAG' 258 9 1 3KH6 GLY A 10 ? UNP Q460N3 ? ? 'EXPRESSION TAG' 259 10 1 3KH6 VAL A 11 ? UNP Q460N3 ? ? 'EXPRESSION TAG' 260 11 1 3KH6 ASP A 12 ? UNP Q460N3 ? ? 'EXPRESSION TAG' 261 12 1 3KH6 LEU A 13 ? UNP Q460N3 ? ? 'EXPRESSION TAG' 262 13 1 3KH6 GLY A 14 ? UNP Q460N3 ? ? 'EXPRESSION TAG' 263 14 1 3KH6 THR A 15 ? UNP Q460N3 ? ? 'EXPRESSION TAG' 264 15 1 3KH6 GLU A 16 ? UNP Q460N3 ? ? 'EXPRESSION TAG' 265 16 1 3KH6 ASN A 17 ? UNP Q460N3 ? ? 'EXPRESSION TAG' 266 17 1 3KH6 LEU A 18 ? UNP Q460N3 ? ? 'EXPRESSION TAG' 267 18 1 3KH6 TYR A 19 ? UNP Q460N3 ? ? 'EXPRESSION TAG' 268 19 1 3KH6 PHE A 20 ? UNP Q460N3 ? ? 'EXPRESSION TAG' 269 20 1 3KH6 GLN A 21 ? UNP Q460N3 ? ? 'EXPRESSION TAG' 270 21 1 3KH6 SER A 22 ? UNP Q460N3 ? ? 'EXPRESSION TAG' 271 22 1 3KH6 MET A 23 ? UNP Q460N3 ? ? 'EXPRESSION TAG' 272 23 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 APR non-polymer . ADENOSINE-5-DIPHOSPHORIBOSE ? 'C15 H23 N5 O14 P2' 559.316 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3KH6 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.26 _exptl_crystal.density_percent_sol 45.57 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 377 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5 _exptl_crystal_grow.pdbx_details '20% PEG6000, 0.1M Na-Acetate, 0.2M NaCl, pH 5, VAPOR DIFFUSION, SITTING DROP, temperature 377K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2009-06-02 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator mirrors _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.91841 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'BESSY BEAMLINE 14.2' _diffrn_source.pdbx_synchrotron_site BESSY _diffrn_source.pdbx_synchrotron_beamline 14.2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.91841 # _reflns.entry_id 3KH6 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 35 _reflns.d_resolution_high 2.2 _reflns.number_obs 10255 _reflns.number_all 10255 _reflns.percent_possible_obs 100 _reflns.pdbx_Rmerge_I_obs 0.127 _reflns.pdbx_Rsym_value 0.120 _reflns.pdbx_netI_over_sigmaI 13.9 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.2 _reflns_shell.d_res_low 2.26 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.553 _reflns_shell.pdbx_Rsym_value 0.417 _reflns_shell.meanI_over_sigI_obs 4.4 _reflns_shell.pdbx_redundancy 7.2 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 740 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3KH6 _refine.ls_number_reflns_obs 9742 _refine.ls_number_reflns_all 9742 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 34.06 _refine.ls_d_res_high 2.20 _refine.ls_percent_reflns_obs 100.00 _refine.ls_R_factor_obs 0.17869 _refine.ls_R_factor_all 0.17869 _refine.ls_R_factor_R_work 0.17538 _refine.ls_R_factor_R_free 0.24224 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 513 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.952 _refine.correlation_coeff_Fo_to_Fc_free 0.899 _refine.B_iso_mean 19.444 _refine.aniso_B[1][1] 2.11 _refine.aniso_B[2][2] -0.66 _refine.aniso_B[3][3] -1.45 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB ENTRY 1SPV' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.246 _refine.pdbx_overall_ESU_R_Free 0.212 _refine.overall_SU_ML 0.138 _refine.overall_SU_B 5.342 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1336 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 36 _refine_hist.number_atoms_solvent 96 _refine_hist.number_atoms_total 1468 _refine_hist.d_res_high 2.20 _refine_hist.d_res_low 34.06 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.017 0.022 ? 1420 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 946 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.921 1.995 ? 1935 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.930 3.003 ? 2311 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.676 5.000 ? 183 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 33.713 24.909 ? 55 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.925 15.000 ? 248 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 19.163 15.000 ? 7 'X-RAY DIFFRACTION' ? r_chiral_restr 0.154 0.200 ? 234 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.007 0.021 ? 1548 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 259 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.853 1.500 ? 889 'X-RAY DIFFRACTION' ? r_mcbond_other 0.186 1.500 ? 361 'X-RAY DIFFRACTION' ? r_mcangle_it 1.576 2.000 ? 1452 'X-RAY DIFFRACTION' ? r_scbond_it 2.492 3.000 ? 531 'X-RAY DIFFRACTION' ? r_scangle_it 4.197 4.500 ? 480 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.200 _refine_ls_shell.d_res_low 2.257 _refine_ls_shell.number_reflns_R_work 700 _refine_ls_shell.R_factor_R_work 0.182 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.310 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 37 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3KH6 _struct.title 'Human poly(adp-ribose) polymerase 15, macro domain 2 in complex with adenosine-5-diphosphoribose' _struct.pdbx_descriptor 'Poly [ADP-ribose] polymerase 15 (E.C.2.4.2.30)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3KH6 _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text ;MACRO, PARP, POLY (ADP-RIBOSE) POLYMERASE, ADP-RIBOSE, BAL3, B-aggressive lymphoma protein 3, SGC, Structural Genomics Consortium, Glycosyltransferase, NAD, Nucleus, Transcription, Transcription regulation, Transferase ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 41 ? GLU A 45 ? ASP A 290 GLU A 294 5 ? 5 HELX_P HELX_P2 2 GLY A 63 ? GLY A 73 ? GLY A 312 GLY A 322 1 ? 11 HELX_P HELX_P3 3 GLY A 73 ? ALA A 85 ? GLY A 322 ALA A 334 1 ? 13 HELX_P HELX_P4 4 ASP A 112 ? ARG A 127 ? ASP A 361 ARG A 376 1 ? 16 HELX_P HELX_P5 5 ASN A 145 ? HIS A 164 ? ASN A 394 HIS A 413 1 ? 20 HELX_P HELX_P6 6 PRO A 179 ? LYS A 191 ? PRO A 428 LYS A 440 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 7 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel A 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA A 25 ? ILE A 30 ? ALA A 274 ILE A 279 A 2 ILE A 33 ? THR A 39 ? ILE A 282 THR A 288 A 3 THR A 171 ? ILE A 176 ? THR A 420 ILE A 425 A 4 SER A 131 ? LEU A 134 ? SER A 380 LEU A 383 A 5 VAL A 49 ? THR A 54 ? VAL A 298 THR A 303 A 6 ILE A 103 ? PRO A 108 ? ILE A 352 PRO A 357 A 7 ILE A 92 ? PRO A 95 ? ILE A 341 PRO A 344 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 30 ? N ILE A 279 O ILE A 33 ? O ILE A 282 A 2 3 N GLN A 36 ? N GLN A 285 O VAL A 172 ? O VAL A 421 A 3 4 O LYS A 173 ? O LYS A 422 N VAL A 132 ? N VAL A 381 A 4 5 O SER A 133 ? O SER A 382 N VAL A 51 ? N VAL A 300 A 5 6 N ASN A 52 ? N ASN A 301 O VAL A 107 ? O VAL A 356 A 6 7 O HIS A 106 ? O HIS A 355 N ILE A 92 ? N ILE A 341 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 29 _struct_site.details 'BINDING SITE FOR RESIDUE APR A 800' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 29 HOH C . ? HOH A 1 . ? 1_555 ? 2 AC1 29 HOH C . ? HOH A 2 . ? 1_555 ? 3 AC1 29 HOH C . ? HOH A 8 . ? 1_555 ? 4 AC1 29 HOH C . ? HOH A 29 . ? 1_555 ? 5 AC1 29 HOH C . ? HOH A 45 . ? 1_555 ? 6 AC1 29 HOH C . ? HOH A 69 . ? 1_555 ? 7 AC1 29 HOH C . ? HOH A 70 . ? 1_555 ? 8 AC1 29 HOH C . ? HOH A 73 . ? 1_555 ? 9 AC1 29 HOH C . ? HOH A 81 . ? 1_555 ? 10 AC1 29 ASP A 41 ? ASP A 290 . ? 1_555 ? 11 AC1 29 ILE A 42 ? ILE A 291 . ? 1_555 ? 12 AC1 29 SER A 53 ? SER A 302 . ? 1_555 ? 13 AC1 29 THR A 54 ? THR A 303 . ? 1_555 ? 14 AC1 29 ARG A 56 ? ARG A 305 . ? 1_555 ? 15 AC1 29 ARG A 60 ? ARG A 309 . ? 1_555 ? 16 AC1 29 SER A 62 ? SER A 311 . ? 1_555 ? 17 AC1 29 GLY A 63 ? GLY A 312 . ? 1_555 ? 18 AC1 29 VAL A 64 ? VAL A 313 . ? 1_555 ? 19 AC1 29 ALA A 67 ? ALA A 316 . ? 1_555 ? 20 AC1 29 GLY A 109 ? GLY A 358 . ? 1_555 ? 21 AC1 29 GLY A 110 ? GLY A 359 . ? 1_555 ? 22 AC1 29 ALA A 136 ? ALA A 385 . ? 1_555 ? 23 AC1 29 GLY A 138 ? GLY A 387 . ? 1_555 ? 24 AC1 29 THR A 139 ? THR A 388 . ? 1_555 ? 25 AC1 29 GLY A 140 ? GLY A 389 . ? 1_555 ? 26 AC1 29 ASN A 141 ? ASN A 390 . ? 1_555 ? 27 AC1 29 ALA A 142 ? ALA A 391 . ? 1_555 ? 28 AC1 29 PHE A 177 ? PHE A 426 . ? 1_555 ? 29 AC1 29 GLN A 178 ? GLN A 427 . ? 1_555 ? # _database_PDB_matrix.entry_id 3KH6 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3KH6 _atom_sites.fract_transf_matrix[1][1] 0.014684 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010966 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015911 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 250 ? ? ? A . n A 1 2 HIS 2 251 ? ? ? A . n A 1 3 HIS 3 252 ? ? ? A . n A 1 4 HIS 4 253 ? ? ? A . n A 1 5 HIS 5 254 ? ? ? A . n A 1 6 HIS 6 255 ? ? ? A . n A 1 7 HIS 7 256 ? ? ? A . n A 1 8 SER 8 257 ? ? ? A . n A 1 9 SER 9 258 ? ? ? A . n A 1 10 GLY 10 259 ? ? ? A . n A 1 11 VAL 11 260 ? ? ? A . n A 1 12 ASP 12 261 ? ? ? A . n A 1 13 LEU 13 262 ? ? ? A . n A 1 14 GLY 14 263 ? ? ? A . n A 1 15 THR 15 264 ? ? ? A . n A 1 16 GLU 16 265 ? ? ? A . n A 1 17 ASN 17 266 ? ? ? A . n A 1 18 LEU 18 267 ? ? ? A . n A 1 19 TYR 19 268 268 TYR TYR A . n A 1 20 PHE 20 269 269 PHE PHE A . n A 1 21 GLN 21 270 270 GLN GLN A . n A 1 22 SER 22 271 271 SER SER A . n A 1 23 MET 23 272 272 MET MET A . n A 1 24 THR 24 273 273 THR THR A . n A 1 25 ALA 25 274 274 ALA ALA A . n A 1 26 TYR 26 275 275 TYR TYR A . n A 1 27 GLU 27 276 276 GLU GLU A . n A 1 28 MET 28 277 277 MET MET A . n A 1 29 LYS 29 278 278 LYS LYS A . n A 1 30 ILE 30 279 279 ILE ILE A . n A 1 31 GLY 31 280 280 GLY GLY A . n A 1 32 ALA 32 281 281 ALA ALA A . n A 1 33 ILE 33 282 282 ILE ILE A . n A 1 34 THR 34 283 283 THR THR A . n A 1 35 PHE 35 284 284 PHE PHE A . n A 1 36 GLN 36 285 285 GLN GLN A . n A 1 37 VAL 37 286 286 VAL VAL A . n A 1 38 ALA 38 287 287 ALA ALA A . n A 1 39 THR 39 288 288 THR THR A . n A 1 40 GLY 40 289 289 GLY GLY A . n A 1 41 ASP 41 290 290 ASP ASP A . n A 1 42 ILE 42 291 291 ILE ILE A . n A 1 43 ALA 43 292 292 ALA ALA A . n A 1 44 THR 44 293 293 THR THR A . n A 1 45 GLU 45 294 294 GLU GLU A . n A 1 46 GLN 46 295 295 GLN GLN A . n A 1 47 VAL 47 296 296 VAL VAL A . n A 1 48 ASP 48 297 297 ASP ASP A . n A 1 49 VAL 49 298 298 VAL VAL A . n A 1 50 ILE 50 299 299 ILE ILE A . n A 1 51 VAL 51 300 300 VAL VAL A . n A 1 52 ASN 52 301 301 ASN ASN A . n A 1 53 SER 53 302 302 SER SER A . n A 1 54 THR 54 303 303 THR THR A . n A 1 55 ALA 55 304 304 ALA ALA A . n A 1 56 ARG 56 305 305 ARG ARG A . n A 1 57 THR 57 306 306 THR THR A . n A 1 58 PHE 58 307 307 PHE PHE A . n A 1 59 ASN 59 308 308 ASN ASN A . n A 1 60 ARG 60 309 309 ARG ARG A . n A 1 61 LYS 61 310 310 LYS LYS A . n A 1 62 SER 62 311 311 SER SER A . n A 1 63 GLY 63 312 312 GLY GLY A . n A 1 64 VAL 64 313 313 VAL VAL A . n A 1 65 SER 65 314 314 SER SER A . n A 1 66 ARG 66 315 315 ARG ARG A . n A 1 67 ALA 67 316 316 ALA ALA A . n A 1 68 ILE 68 317 317 ILE ILE A . n A 1 69 LEU 69 318 318 LEU LEU A . n A 1 70 GLU 70 319 319 GLU GLU A . n A 1 71 GLY 71 320 320 GLY GLY A . n A 1 72 ALA 72 321 321 ALA ALA A . n A 1 73 GLY 73 322 322 GLY GLY A . n A 1 74 GLN 74 323 323 GLN GLN A . n A 1 75 ALA 75 324 324 ALA ALA A . n A 1 76 VAL 76 325 325 VAL VAL A . n A 1 77 GLU 77 326 326 GLU GLU A . n A 1 78 SER 78 327 327 SER SER A . n A 1 79 GLU 79 328 328 GLU GLU A . n A 1 80 CYS 80 329 329 CYS CYS A . n A 1 81 ALA 81 330 330 ALA ALA A . n A 1 82 VAL 82 331 331 VAL VAL A . n A 1 83 LEU 83 332 332 LEU LEU A . n A 1 84 ALA 84 333 333 ALA ALA A . n A 1 85 ALA 85 334 334 ALA ALA A . n A 1 86 GLN 86 335 335 GLN GLN A . n A 1 87 PRO 87 336 336 PRO PRO A . n A 1 88 HIS 88 337 337 HIS HIS A . n A 1 89 ARG 89 338 338 ARG ARG A . n A 1 90 ASP 90 339 339 ASP ASP A . n A 1 91 PHE 91 340 340 PHE PHE A . n A 1 92 ILE 92 341 341 ILE ILE A . n A 1 93 ILE 93 342 342 ILE ILE A . n A 1 94 THR 94 343 343 THR THR A . n A 1 95 PRO 95 344 344 PRO PRO A . n A 1 96 GLY 96 345 345 GLY GLY A . n A 1 97 GLY 97 346 346 GLY GLY A . n A 1 98 CYS 98 347 347 CYS CYS A . n A 1 99 LEU 99 348 348 LEU LEU A . n A 1 100 LYS 100 349 349 LYS LYS A . n A 1 101 CYS 101 350 350 CYS CYS A . n A 1 102 LYS 102 351 351 LYS LYS A . n A 1 103 ILE 103 352 352 ILE ILE A . n A 1 104 ILE 104 353 353 ILE ILE A . n A 1 105 ILE 105 354 354 ILE ILE A . n A 1 106 HIS 106 355 355 HIS HIS A . n A 1 107 VAL 107 356 356 VAL VAL A . n A 1 108 PRO 108 357 357 PRO PRO A . n A 1 109 GLY 109 358 358 GLY GLY A . n A 1 110 GLY 110 359 359 GLY GLY A . n A 1 111 LYS 111 360 360 LYS LYS A . n A 1 112 ASP 112 361 361 ASP ASP A . n A 1 113 VAL 113 362 362 VAL VAL A . n A 1 114 ARG 114 363 363 ARG ARG A . n A 1 115 LYS 115 364 364 LYS LYS A . n A 1 116 THR 116 365 365 THR THR A . n A 1 117 VAL 117 366 366 VAL VAL A . n A 1 118 THR 118 367 367 THR THR A . n A 1 119 SER 119 368 368 SER SER A . n A 1 120 VAL 120 369 369 VAL VAL A . n A 1 121 LEU 121 370 370 LEU LEU A . n A 1 122 GLU 122 371 371 GLU GLU A . n A 1 123 GLU 123 372 372 GLU GLU A . n A 1 124 CYS 124 373 373 CYS CYS A . n A 1 125 GLU 125 374 374 GLU GLU A . n A 1 126 GLN 126 375 375 GLN GLN A . n A 1 127 ARG 127 376 376 ARG ARG A . n A 1 128 LYS 128 377 377 LYS LYS A . n A 1 129 TYR 129 378 378 TYR TYR A . n A 1 130 THR 130 379 379 THR THR A . n A 1 131 SER 131 380 380 SER SER A . n A 1 132 VAL 132 381 381 VAL VAL A . n A 1 133 SER 133 382 382 SER SER A . n A 1 134 LEU 134 383 383 LEU LEU A . n A 1 135 PRO 135 384 384 PRO PRO A . n A 1 136 ALA 136 385 385 ALA ALA A . n A 1 137 ILE 137 386 386 ILE ILE A . n A 1 138 GLY 138 387 387 GLY GLY A . n A 1 139 THR 139 388 388 THR THR A . n A 1 140 GLY 140 389 389 GLY GLY A . n A 1 141 ASN 141 390 390 ASN ASN A . n A 1 142 ALA 142 391 391 ALA ALA A . n A 1 143 GLY 143 392 392 GLY GLY A . n A 1 144 LYS 144 393 393 LYS LYS A . n A 1 145 ASN 145 394 394 ASN ASN A . n A 1 146 PRO 146 395 395 PRO PRO A . n A 1 147 ILE 147 396 396 ILE ILE A . n A 1 148 THR 148 397 397 THR THR A . n A 1 149 VAL 149 398 398 VAL VAL A . n A 1 150 ALA 150 399 399 ALA ALA A . n A 1 151 ASP 151 400 400 ASP ASP A . n A 1 152 ASN 152 401 401 ASN ASN A . n A 1 153 ILE 153 402 402 ILE ILE A . n A 1 154 ILE 154 403 403 ILE ILE A . n A 1 155 ASP 155 404 404 ASP ASP A . n A 1 156 ALA 156 405 405 ALA ALA A . n A 1 157 ILE 157 406 406 ILE ILE A . n A 1 158 VAL 158 407 407 VAL VAL A . n A 1 159 ASP 159 408 408 ASP ASP A . n A 1 160 PHE 160 409 409 PHE PHE A . n A 1 161 SER 161 410 410 SER SER A . n A 1 162 SER 162 411 411 SER SER A . n A 1 163 GLN 163 412 412 GLN GLN A . n A 1 164 HIS 164 413 413 HIS HIS A . n A 1 165 SER 165 414 414 SER SER A . n A 1 166 THR 166 415 415 THR THR A . n A 1 167 PRO 167 416 416 PRO PRO A . n A 1 168 SER 168 417 417 SER SER A . n A 1 169 LEU 169 418 418 LEU LEU A . n A 1 170 LYS 170 419 419 LYS LYS A . n A 1 171 THR 171 420 420 THR THR A . n A 1 172 VAL 172 421 421 VAL VAL A . n A 1 173 LYS 173 422 422 LYS LYS A . n A 1 174 VAL 174 423 423 VAL VAL A . n A 1 175 VAL 175 424 424 VAL VAL A . n A 1 176 ILE 176 425 425 ILE ILE A . n A 1 177 PHE 177 426 426 PHE PHE A . n A 1 178 GLN 178 427 427 GLN GLN A . n A 1 179 PRO 179 428 428 PRO PRO A . n A 1 180 GLU 180 429 429 GLU GLU A . n A 1 181 LEU 181 430 430 LEU LEU A . n A 1 182 LEU 182 431 431 LEU LEU A . n A 1 183 ASN 183 432 432 ASN ASN A . n A 1 184 ILE 184 433 433 ILE ILE A . n A 1 185 PHE 185 434 434 PHE PHE A . n A 1 186 TYR 186 435 435 TYR TYR A . n A 1 187 ASP 187 436 436 ASP ASP A . n A 1 188 SER 188 437 437 SER SER A . n A 1 189 MET 189 438 438 MET MET A . n A 1 190 LYS 190 439 439 LYS LYS A . n A 1 191 LYS 191 440 440 LYS LYS A . n A 1 192 ARG 192 441 441 ARG ARG A . n A 1 193 ASP 193 442 442 ASP ASP A . n A 1 194 LEU 194 443 443 LEU LEU A . n A 1 195 SER 195 444 ? ? ? A . n A 1 196 ALA 196 445 ? ? ? A . n A 1 197 SER 197 446 ? ? ? A . n A 1 198 LEU 198 447 ? ? ? A . n A 1 199 ASN 199 448 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Structural Genomics Consortium' _pdbx_SG_project.initial_of_center SGC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 APR 1 800 800 APR APR A . C 3 HOH 1 1 1 HOH HOH A . C 3 HOH 2 2 2 HOH HOH A . C 3 HOH 3 3 3 HOH HOH A . C 3 HOH 4 4 4 HOH HOH A . C 3 HOH 5 5 5 HOH HOH A . C 3 HOH 6 6 6 HOH HOH A . C 3 HOH 7 7 7 HOH HOH A . C 3 HOH 8 8 8 HOH HOH A . C 3 HOH 9 9 9 HOH HOH A . C 3 HOH 10 10 10 HOH HOH A . C 3 HOH 11 11 11 HOH HOH A . C 3 HOH 12 12 12 HOH HOH A . C 3 HOH 13 13 13 HOH HOH A . C 3 HOH 14 14 14 HOH HOH A . C 3 HOH 15 15 15 HOH HOH A . C 3 HOH 16 16 16 HOH HOH A . C 3 HOH 17 17 17 HOH HOH A . C 3 HOH 18 18 18 HOH HOH A . C 3 HOH 19 19 19 HOH HOH A . C 3 HOH 20 20 20 HOH HOH A . C 3 HOH 21 21 21 HOH HOH A . C 3 HOH 22 22 22 HOH HOH A . C 3 HOH 23 23 23 HOH HOH A . C 3 HOH 24 24 24 HOH HOH A . C 3 HOH 25 25 25 HOH HOH A . C 3 HOH 26 26 26 HOH HOH A . C 3 HOH 27 27 27 HOH HOH A . C 3 HOH 28 28 28 HOH HOH A . C 3 HOH 29 29 29 HOH HOH A . C 3 HOH 30 30 30 HOH HOH A . C 3 HOH 31 31 31 HOH HOH A . C 3 HOH 32 32 32 HOH HOH A . C 3 HOH 33 33 33 HOH HOH A . C 3 HOH 34 34 34 HOH HOH A . C 3 HOH 35 35 35 HOH HOH A . C 3 HOH 36 36 36 HOH HOH A . C 3 HOH 37 37 37 HOH HOH A . C 3 HOH 38 38 38 HOH HOH A . C 3 HOH 39 39 39 HOH HOH A . C 3 HOH 40 40 40 HOH HOH A . C 3 HOH 41 41 41 HOH HOH A . C 3 HOH 42 42 42 HOH HOH A . C 3 HOH 43 43 43 HOH HOH A . C 3 HOH 44 44 44 HOH HOH A . C 3 HOH 45 45 45 HOH HOH A . C 3 HOH 46 46 46 HOH HOH A . C 3 HOH 47 47 47 HOH HOH A . C 3 HOH 48 48 48 HOH HOH A . C 3 HOH 49 49 49 HOH HOH A . C 3 HOH 50 50 50 HOH HOH A . C 3 HOH 51 51 51 HOH HOH A . C 3 HOH 52 52 52 HOH HOH A . C 3 HOH 53 53 53 HOH HOH A . C 3 HOH 54 54 54 HOH HOH A . C 3 HOH 55 55 55 HOH HOH A . C 3 HOH 56 56 56 HOH HOH A . C 3 HOH 57 57 57 HOH HOH A . C 3 HOH 58 58 58 HOH HOH A . C 3 HOH 59 59 59 HOH HOH A . C 3 HOH 60 60 60 HOH HOH A . C 3 HOH 61 61 61 HOH HOH A . C 3 HOH 62 62 62 HOH HOH A . C 3 HOH 63 63 63 HOH HOH A . C 3 HOH 64 64 64 HOH HOH A . C 3 HOH 65 65 65 HOH HOH A . C 3 HOH 66 66 66 HOH HOH A . C 3 HOH 67 67 67 HOH HOH A . C 3 HOH 68 68 68 HOH HOH A . C 3 HOH 69 69 69 HOH HOH A . C 3 HOH 70 70 70 HOH HOH A . C 3 HOH 71 71 71 HOH HOH A . C 3 HOH 72 72 72 HOH HOH A . C 3 HOH 73 73 73 HOH HOH A . C 3 HOH 74 74 74 HOH HOH A . C 3 HOH 75 75 75 HOH HOH A . C 3 HOH 76 76 76 HOH HOH A . C 3 HOH 77 77 77 HOH HOH A . C 3 HOH 78 78 78 HOH HOH A . C 3 HOH 79 79 79 HOH HOH A . C 3 HOH 80 80 80 HOH HOH A . C 3 HOH 81 81 81 HOH HOH A . C 3 HOH 82 82 82 HOH HOH A . C 3 HOH 83 83 83 HOH HOH A . C 3 HOH 84 84 84 HOH HOH A . C 3 HOH 85 85 85 HOH HOH A . C 3 HOH 86 86 86 HOH HOH A . C 3 HOH 87 87 87 HOH HOH A . C 3 HOH 88 88 88 HOH HOH A . C 3 HOH 89 89 89 HOH HOH A . C 3 HOH 90 90 90 HOH HOH A . C 3 HOH 91 91 91 HOH HOH A . C 3 HOH 92 92 92 HOH HOH A . C 3 HOH 93 93 93 HOH HOH A . C 3 HOH 94 94 94 HOH HOH A . C 3 HOH 95 95 95 HOH HOH A . C 3 HOH 96 96 96 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-11-24 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2013-02-06 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 3 'Structure model' repository Obsolete ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MxCuBE 'data collection' . ? 1 BALBES 'model building' . ? 2 REFMAC refinement 5.5.0102 ? 3 XDS 'data reduction' . ? 4 XSCALE 'data scaling' . ? 5 BALBES phasing . ? 6 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OG1 A THR 306 ? ? OD1 A ASN 308 ? ? 2.02 2 1 O A HOH 6 ? ? O A HOH 92 ? ? 2.15 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ARG _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 338 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -62.82 _pdbx_validate_torsion.psi -177.08 # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 "C1'" ? A APR 800 ? 'WRONG HAND' . 2 1 "C2'" ? A APR 800 ? 'WRONG HAND' . 3 1 "C3'" ? A APR 800 ? 'WRONG HAND' . 4 1 "C4'" ? A APR 800 ? 'WRONG HAND' . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 250 ? A MET 1 2 1 Y 1 A HIS 251 ? A HIS 2 3 1 Y 1 A HIS 252 ? A HIS 3 4 1 Y 1 A HIS 253 ? A HIS 4 5 1 Y 1 A HIS 254 ? A HIS 5 6 1 Y 1 A HIS 255 ? A HIS 6 7 1 Y 1 A HIS 256 ? A HIS 7 8 1 Y 1 A SER 257 ? A SER 8 9 1 Y 1 A SER 258 ? A SER 9 10 1 Y 1 A GLY 259 ? A GLY 10 11 1 Y 1 A VAL 260 ? A VAL 11 12 1 Y 1 A ASP 261 ? A ASP 12 13 1 Y 1 A LEU 262 ? A LEU 13 14 1 Y 1 A GLY 263 ? A GLY 14 15 1 Y 1 A THR 264 ? A THR 15 16 1 Y 1 A GLU 265 ? A GLU 16 17 1 Y 1 A ASN 266 ? A ASN 17 18 1 Y 1 A LEU 267 ? A LEU 18 19 1 Y 1 A SER 444 ? A SER 195 20 1 Y 1 A ALA 445 ? A ALA 196 21 1 Y 1 A SER 446 ? A SER 197 22 1 Y 1 A LEU 447 ? A LEU 198 23 1 Y 1 A ASN 448 ? A ASN 199 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ADENOSINE-5-DIPHOSPHORIBOSE APR 3 water HOH #